Wall clock time and date at job start Tue Mar 31 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47094 * 120.00179 * 2 1 4 4 O 1.21615 * 120.00379 * 179.97438 * 3 2 1 5 5 N 1.34778 * 119.99843 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99694 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46806 * 180.02562 * 6 5 3 8 8 O 1.42900 * 110.64238 * 66.68418 * 7 6 5 9 9 C 1.55153 * 110.71990 * 190.02405 * 7 6 5 10 10 C 1.54907 * 101.58527 * 153.86174 * 9 7 6 11 11 N 1.47423 * 104.82929 * 322.99138 * 10 9 7 12 12 C 1.36940 * 125.64566 * 204.16496 * 11 10 9 13 13 H 1.08004 * 119.99831 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00031 * 359.94977 * 12 11 10 15 15 N 1.31617 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99992 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47184 * 60.00688 * 16 14 12 18 18 H 1.48500 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47355 * 300.00644 * 16 14 12 20 20 C 1.47021 * 108.70738 * 24.12641 * 11 10 9 21 21 C 1.33001 * 119.99680 * 179.97438 * 2 1 3 22 22 C 1.51575 * 135.78499 * 0.02562 * 21 2 1 23 23 C 1.53842 * 86.85808 * 205.20171 * 22 21 2 24 24 C 1.51879 * 135.88840 * 180.02562 * 21 2 1 25 25 H 1.08995 * 109.47355 * 270.00107 * 1 2 3 26 26 H 1.09001 * 109.46526 * 30.00597 * 1 2 3 27 27 H 1.09003 * 109.46478 * 150.00147 * 1 2 3 28 28 H 0.96993 * 120.00186 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.47136 * 299.99261 * 6 5 3 30 30 H 1.09003 * 109.47600 * 60.00296 * 6 5 3 31 31 H 0.96696 * 113.99962 * 300.70044 * 8 7 6 32 32 H 1.09001 * 111.00343 * 271.93502 * 9 7 6 33 33 H 1.09003 * 111.00833 * 35.78522 * 9 7 6 34 34 H 1.08999 * 110.36878 * 204.15080 * 10 9 7 35 35 H 1.09001 * 110.36673 * 81.82639 * 10 9 7 36 36 H 0.97001 * 120.00122 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.88033 * 239.52430 * 20 11 10 38 38 H 1.08994 * 109.88370 * 118.35836 * 20 11 10 39 39 H 1.09002 * 113.66759 * 90.68870 * 22 21 2 40 40 H 1.09002 * 113.66655 * 319.71204 * 22 21 2 41 41 H 1.09002 * 113.65927 * 89.64300 * 23 22 21 42 42 H 1.09000 * 113.65873 * 220.67954 * 23 22 21 43 43 H 1.09001 * 113.66786 * 40.33254 * 24 21 2 44 44 H 1.09002 * 113.75164 * 269.27578 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2738 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3013 3.7098 -0.0011 7 6 1.3070 4.8728 -0.0010 8 8 0.5778 4.9120 1.2274 9 6 2.0363 6.2186 -0.2541 10 6 0.9051 7.0727 -0.8790 11 7 0.1407 6.1314 -1.7173 12 6 -0.6315 6.4697 -2.7964 13 1 -1.1543 5.7024 -3.3482 14 6 -0.7429 7.7989 -3.1808 15 7 -0.1058 8.7340 -2.5084 16 14 -1.7968 8.2605 -4.6523 17 1 -3.1998 7.8391 -4.4080 18 1 -1.7492 9.7311 -4.8535 19 1 -1.2792 7.5784 -5.8655 20 6 0.3455 4.7691 -1.2037 21 6 2.1720 -1.1519 0.0005 22 6 1.7997 -2.6212 0.0007 23 6 3.1675 -2.8807 0.6554 24 6 3.6327 -1.5677 0.0012 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 0.5987 2.4411 -0.0013 29 1 2.9278 3.7679 0.8889 30 1 2.9279 3.7672 -0.8911 31 1 0.0733 4.1078 1.4111 32 1 2.3849 6.6560 0.6814 33 1 2.8614 6.0901 -0.9548 34 1 1.3260 7.8703 -1.4911 35 1 0.2683 7.4885 -0.0981 36 1 -0.1833 9.6628 -2.7771 37 1 0.7875 4.1433 -1.9789 38 1 -0.6066 4.3473 -0.8819 39 1 1.7042 -3.0485 -0.9975 40 1 0.9538 -2.8581 0.6460 41 1 3.1451 -2.8437 1.7445 42 1 3.6759 -3.7647 0.2706 43 1 4.2617 -0.9555 0.6474 44 1 4.0519 -1.7003 -0.9962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754751979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:23 Heat of formation + Delta-G solvation = -21.709384 kcal Electronic energy + Delta-G solvation = -24001.819980 eV Core-core repulsion = 20534.985241 eV Total energy + Delta-G solvation = -3466.834740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16554 -38.91430 -38.01268 -35.12184 -34.27864 -33.15350 -32.02514 -29.57072 -28.13941 -26.80382 -25.89988 -25.66842 -23.96008 -22.70460 -20.83570 -20.05543 -19.88701 -18.63686 -16.95190 -16.86698 -16.13845 -15.93560 -15.75874 -15.18196 -14.74147 -14.44243 -14.22417 -13.94728 -13.64271 -13.41377 -13.08915 -12.92650 -12.70122 -12.61599 -12.21727 -12.14976 -12.07343 -11.80997 -11.57811 -11.18682 -11.05064 -10.87091 -10.79175 -10.74088 -10.34280 -10.18156 -10.04011 -9.71807 -9.65503 -9.39465 -9.16303 -8.88749 -8.65849 -6.86958 -5.67095 -3.09596 1.22081 3.14879 3.25487 3.39265 3.43206 3.44916 4.16751 4.23958 4.44887 4.47469 4.48616 4.76275 4.83984 4.89260 5.07099 5.19909 5.29390 5.38217 5.38754 5.41241 5.46869 5.49814 5.55073 5.63747 5.66252 5.83626 5.89389 5.97199 5.98481 6.10461 6.23618 6.38578 6.40889 6.48218 6.49964 6.60010 6.64258 7.51371 7.55046 7.59894 7.83406 7.94284 8.25053 8.33500 9.19221 9.79674 10.44187 11.36609 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.003222 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.057949 B = 8689.321857 C = 9254.855406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.166 4.166 3 C 0.556 3.444 4 O -0.543 6.543 5 N -0.724 5.724 6 C 0.105 3.895 7 C 0.105 3.895 8 O -0.543 6.543 9 C -0.128 4.128 10 C 0.156 3.844 11 N -0.599 5.599 12 C -0.226 4.226 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.921 5.921 16 Si 0.916 3.084 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.116 3.884 21 C -0.071 4.071 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.102 4.102 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.399 0.601 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.364 0.636 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.018 0.982 36 H 0.254 0.746 37 H 0.031 0.969 38 H 0.022 0.978 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -20.406 7.007 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.169 4.169 3 C 0.345 3.655 4 O -0.421 6.421 5 N -0.376 5.376 6 C -0.019 4.019 7 C 0.063 3.937 8 O -0.348 6.348 9 C -0.167 4.167 10 C 0.032 3.968 11 N -0.326 5.326 12 C -0.355 4.355 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.746 3.254 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.211 1.211 20 C -0.011 4.011 21 C -0.073 4.073 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.138 4.138 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.210 0.790 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.484 -19.569 6.916 21.234 hybrid contribution -1.419 -0.300 -0.753 1.635 sum 3.065 -19.869 6.163 21.027 Atomic orbital electron populations 1.20699 0.90458 1.03170 1.02477 1.20515 0.95908 0.91391 1.09117 1.18223 0.87198 0.83757 0.76344 1.90763 1.13513 1.87741 1.50126 1.45958 1.10456 1.05825 1.75387 1.22082 0.95126 0.81630 1.03067 1.22564 0.91363 0.95228 0.84502 1.86620 1.65889 1.42518 1.39741 1.23053 0.99461 0.93446 1.00736 1.21943 0.89236 0.92646 0.93023 1.44404 1.55834 0.99983 1.32337 1.19014 1.21015 0.92252 1.03187 0.90584 1.24798 1.00611 0.95565 0.99539 1.69781 1.45986 1.00076 1.41045 0.86135 0.79890 0.77290 0.82053 1.21201 1.21507 1.21127 1.21914 0.95488 0.90257 0.93393 1.23423 0.97922 0.93573 0.92381 1.22335 0.98408 0.91728 1.01799 1.22830 0.96438 0.98153 1.00458 1.22333 0.93889 0.95720 1.01902 0.91047 0.91315 0.91146 0.76552 0.90748 0.90321 0.78964 0.91062 0.90578 0.87425 0.96377 0.93572 0.95147 0.96002 0.88276 0.90404 0.89872 0.90654 0.89525 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.56 36.01 0.34 -0.58 16 2 C -0.17 -1.87 6.00 -102.85 -0.62 -2.49 16 3 C 0.56 7.93 7.75 -12.67 -0.10 7.83 16 4 O -0.54 -9.43 15.12 5.26 0.08 -9.35 16 5 N -0.72 -9.57 5.08 -61.49 -0.31 -9.88 16 6 C 0.10 1.60 4.80 -4.04 -0.02 1.58 16 7 C 0.10 1.83 0.93 -88.78 -0.08 1.74 16 8 O -0.54 -9.16 13.10 -35.23 -0.46 -9.62 16 9 C -0.13 -2.49 6.26 -24.59 -0.15 -2.64 16 10 C 0.16 3.86 5.88 -2.53 -0.01 3.85 16 11 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 12 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 13 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 16 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 2.35 5.76 -3.06 -0.02 2.34 16 21 C -0.07 -0.74 6.57 -100.21 -0.66 -1.40 16 22 C -0.11 -0.76 7.75 -27.02 -0.21 -0.97 16 23 C -0.14 -1.02 8.11 -25.89 -0.21 -1.23 16 24 C -0.10 -1.01 7.07 -26.84 -0.19 -1.20 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.56 6.70 -51.93 -0.35 0.22 16 27 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 28 H 0.40 4.49 5.57 -40.82 -0.23 4.26 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.36 4.59 8.44 45.56 0.38 4.98 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.41 7.96 -51.93 -0.41 0.99 16 34 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.03 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -33.22 353.13 -8.89 -42.12 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.30 Total: 6.75 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.18 Total: -0.02 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.33 Total: -52.19 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.38 Total: -18.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.22 -8.89 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754751979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.406 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds