Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47094 * 120.00179 * 2 1 4 4 O 1.21615 * 120.00379 * 179.97438 * 3 2 1 5 5 N 1.34778 * 119.99843 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99694 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46806 * 180.02562 * 6 5 3 8 8 O 1.42900 * 110.64238 * 66.68418 * 7 6 5 9 9 C 1.55153 * 110.71990 * 190.02405 * 7 6 5 10 10 C 1.54907 * 101.58527 * 153.86174 * 9 7 6 11 11 N 1.47423 * 104.82929 * 322.99138 * 10 9 7 12 12 C 1.36940 * 125.64566 * 204.16496 * 11 10 9 13 13 H 1.08004 * 119.99831 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00031 * 359.94977 * 12 11 10 15 15 N 1.31617 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99992 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47184 * 60.00688 * 16 14 12 18 18 H 1.48500 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47355 * 300.00644 * 16 14 12 20 20 C 1.47021 * 108.70738 * 24.12641 * 11 10 9 21 21 C 1.33001 * 119.99680 * 179.97438 * 2 1 3 22 22 C 1.51575 * 135.78499 * 0.02562 * 21 2 1 23 23 C 1.53842 * 86.85808 * 205.20171 * 22 21 2 24 24 C 1.51879 * 135.88840 * 180.02562 * 21 2 1 25 25 H 1.08995 * 109.47355 * 270.00107 * 1 2 3 26 26 H 1.09001 * 109.46526 * 30.00597 * 1 2 3 27 27 H 1.09003 * 109.46478 * 150.00147 * 1 2 3 28 28 H 0.96993 * 120.00186 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.47136 * 299.99261 * 6 5 3 30 30 H 1.09003 * 109.47600 * 60.00296 * 6 5 3 31 31 H 0.96696 * 113.99962 * 300.70044 * 8 7 6 32 32 H 1.09001 * 111.00343 * 271.93502 * 9 7 6 33 33 H 1.09003 * 111.00833 * 35.78522 * 9 7 6 34 34 H 1.08999 * 110.36878 * 204.15080 * 10 9 7 35 35 H 1.09001 * 110.36673 * 81.82639 * 10 9 7 36 36 H 0.97001 * 120.00122 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.88033 * 239.52430 * 20 11 10 38 38 H 1.08994 * 109.88370 * 118.35836 * 20 11 10 39 39 H 1.09002 * 113.66759 * 90.68870 * 22 21 2 40 40 H 1.09002 * 113.66655 * 319.71204 * 22 21 2 41 41 H 1.09002 * 113.65927 * 89.64300 * 23 22 21 42 42 H 1.09000 * 113.65873 * 220.67954 * 23 22 21 43 43 H 1.09001 * 113.66786 * 40.33254 * 24 21 2 44 44 H 1.09002 * 113.75164 * 269.27578 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2738 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3013 3.7098 -0.0011 7 6 1.3070 4.8728 -0.0010 8 8 0.5778 4.9120 1.2274 9 6 2.0363 6.2186 -0.2541 10 6 0.9051 7.0727 -0.8790 11 7 0.1407 6.1314 -1.7173 12 6 -0.6315 6.4697 -2.7964 13 1 -1.1543 5.7024 -3.3482 14 6 -0.7429 7.7989 -3.1808 15 7 -0.1058 8.7340 -2.5084 16 14 -1.7968 8.2605 -4.6523 17 1 -3.1998 7.8391 -4.4080 18 1 -1.7492 9.7311 -4.8535 19 1 -1.2792 7.5784 -5.8655 20 6 0.3455 4.7691 -1.2037 21 6 2.1720 -1.1519 0.0005 22 6 1.7997 -2.6212 0.0007 23 6 3.1675 -2.8807 0.6554 24 6 3.6327 -1.5677 0.0012 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 0.5987 2.4411 -0.0013 29 1 2.9278 3.7679 0.8889 30 1 2.9279 3.7672 -0.8911 31 1 0.0733 4.1078 1.4111 32 1 2.3849 6.6560 0.6814 33 1 2.8614 6.0901 -0.9548 34 1 1.3260 7.8703 -1.4911 35 1 0.2683 7.4885 -0.0981 36 1 -0.1833 9.6628 -2.7771 37 1 0.7875 4.1433 -1.9789 38 1 -0.6066 4.3473 -0.8819 39 1 1.7042 -3.0485 -0.9975 40 1 0.9538 -2.8581 0.6460 41 1 3.1451 -2.8437 1.7445 42 1 3.6759 -3.7647 0.2706 43 1 4.2617 -0.9555 0.6474 44 1 4.0519 -1.7003 -0.9962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754751979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -45.305836 kcal Electronic energy + Delta-G solvation = -24002.843199 eV Core-core repulsion = 20534.985241 eV Total energy + Delta-G solvation = -3467.857959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27564 -40.14897 -39.03037 -36.81628 -35.47119 -34.16665 -33.75873 -31.35450 -29.69524 -27.58137 -27.44179 -26.42950 -25.54760 -23.74460 -22.31070 -21.41772 -21.31270 -19.67675 -18.89689 -17.91325 -17.33748 -17.04057 -16.75778 -16.58888 -16.22928 -15.75551 -15.57997 -15.38834 -14.86845 -14.73067 -14.44010 -13.97934 -13.91176 -13.58043 -13.35321 -13.32140 -13.24820 -12.94768 -12.82208 -12.73627 -12.44737 -12.38864 -12.11108 -12.05727 -11.88848 -11.78721 -11.63440 -11.42878 -10.97624 -10.74857 -10.68329 -10.25989 -9.73830 -8.92354 -7.78518 -5.23911 0.35632 1.46617 1.50052 1.56494 2.08354 2.23443 2.48525 3.13252 3.30939 3.36623 3.46115 3.56309 3.69142 3.83367 3.89170 3.92745 3.99170 4.26435 4.41974 4.45845 4.57885 4.62095 4.74533 4.75718 4.76950 4.81438 4.84045 4.92689 4.96473 5.02085 5.04840 5.05631 5.09847 5.30698 5.36532 5.38028 5.44772 5.59319 5.72756 5.77873 6.27649 6.48172 6.75962 7.07998 7.17834 7.75051 8.39005 9.23537 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.003222 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.057949 B = 8689.321857 C = 9254.855406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.185 4.185 3 C 0.550 3.450 4 O -0.582 6.582 5 N -0.715 5.715 6 C 0.120 3.880 7 C 0.125 3.875 8 O -0.554 6.554 9 C -0.121 4.121 10 C 0.161 3.839 11 N -0.622 5.622 12 C -0.242 4.242 13 H 0.084 0.916 14 C -0.067 4.067 15 N -0.950 5.950 16 Si 0.983 3.017 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.276 1.276 20 C 0.114 3.886 21 C -0.077 4.077 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.410 0.590 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.385 0.615 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.076 0.924 35 H -0.014 1.014 36 H 0.248 0.752 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -23.163 7.065 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.341 3.659 4 O -0.464 6.464 5 N -0.368 5.368 6 C -0.005 4.005 7 C 0.084 3.916 8 O -0.361 6.361 9 C -0.160 4.160 10 C 0.035 3.965 11 N -0.349 5.349 12 C -0.371 4.371 13 H 0.101 0.899 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.811 3.189 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.201 1.201 20 C -0.012 4.012 21 C -0.079 4.079 22 C -0.130 4.130 23 C -0.168 4.168 24 C -0.153 4.153 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.248 0.752 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.004 0.996 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.439 -22.377 6.991 23.694 hybrid contribution -1.065 0.507 -0.733 1.389 sum 2.373 -21.870 6.258 22.871 Atomic orbital electron populations 1.20730 0.88192 1.03870 1.03543 1.20586 0.97358 0.90005 1.10821 1.18805 0.86953 0.84812 0.75360 1.90744 1.15284 1.88312 1.52034 1.45828 1.10922 1.04982 1.75078 1.21765 0.94330 0.81658 1.02762 1.22200 0.90801 0.94834 0.83800 1.86586 1.66250 1.44289 1.38951 1.22913 0.97997 0.93817 1.01244 1.21652 0.90100 0.92990 0.91711 1.44692 1.55762 1.02217 1.32185 1.19439 1.21091 0.92683 1.03901 0.89857 1.25679 1.02233 0.95653 1.02430 1.70043 1.47385 0.99950 1.42551 0.85089 0.78459 0.76462 0.78926 1.20304 1.22033 1.20146 1.22101 0.96832 0.87784 0.94486 1.23912 0.98305 0.95167 0.90478 1.22391 0.98832 0.88765 1.02991 1.22810 0.96384 0.97107 1.00506 1.22449 0.93700 0.97348 1.01841 0.89743 0.91399 0.89654 0.75238 0.90452 0.91328 0.76592 0.89549 0.89616 0.90657 0.99646 0.94248 0.94682 0.94586 0.86654 0.88651 0.89652 0.88805 0.92154 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.56 71.24 0.68 -0.80 16 2 C -0.18 -3.85 6.00 -18.70 -0.11 -3.97 16 3 C 0.55 15.22 7.75 86.57 0.67 15.89 16 4 O -0.58 -20.34 15.12 -4.08 -0.06 -20.40 16 5 N -0.72 -17.87 5.08 -466.69 -2.37 -20.23 16 6 C 0.12 3.49 4.80 86.38 0.41 3.91 16 7 C 0.13 4.21 0.93 -9.60 -0.01 4.20 16 8 O -0.55 -17.68 13.10 -148.98 -1.95 -19.63 16 9 C -0.12 -4.67 6.26 31.98 0.20 -4.47 16 10 C 0.16 8.16 5.88 86.85 0.51 8.67 16 11 N -0.62 -32.17 3.39 -691.99 -2.35 -34.52 16 12 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 13 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 14 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 15 N -0.95 -57.23 10.09 21.65 0.22 -57.01 16 16 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 C 0.11 4.48 5.76 86.73 0.50 4.98 16 21 C -0.08 -1.45 6.57 -17.00 -0.11 -1.56 16 22 C -0.09 -1.03 7.75 30.41 0.24 -0.80 16 23 C -0.13 -1.57 8.11 31.14 0.25 -1.31 16 24 C -0.12 -2.24 7.07 30.53 0.22 -2.02 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.94 6.70 -2.39 -0.02 0.92 16 27 H 0.08 0.93 7.88 -2.39 -0.02 0.91 16 28 H 0.41 8.35 5.57 -92.71 -0.52 7.84 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 31 H 0.38 8.73 8.44 -74.06 -0.62 8.10 16 32 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 3.14 7.96 -2.39 -0.02 3.12 16 34 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16 38 H 0.04 1.34 8.07 -2.39 -0.02 1.32 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 1.47 7.50 -2.39 -0.02 1.45 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -73.73 353.13 0.16 -73.57 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.13 Total: 23.99 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.78 Total: 6.63 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.50 Total: -111.77 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.01 Total: -40.04 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.73 0.16 -73.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754751979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.263 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds