Wall clock time and date at job start Tue Mar 31 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47331 * 273.79060 * 3 2 1 5 5 C 1.52997 * 109.47524 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47492 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99762 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00028 * 175.58760 * 8 6 5 10 10 C 1.53003 * 109.49963 * 300.66530 * 9 8 6 11 11 O 1.42904 * 109.46864 * 305.33886 * 10 9 8 12 12 C 1.53037 * 109.49889 * 60.76243 * 9 8 6 13 13 C 1.53042 * 109.53578 * 58.58666 * 12 9 8 14 14 C 1.53188 * 109.31512 * 61.36363 * 13 12 9 15 15 N 1.46923 * 108.77549 * 305.36546 * 14 13 12 16 16 C 1.36935 * 120.62884 * 233.58305 * 15 14 13 17 17 H 1.08005 * 119.99911 * 141.83913 * 16 15 14 18 18 C 1.38810 * 120.00379 * 321.84394 * 16 15 14 19 19 N 1.31618 * 120.00165 * 354.13972 * 18 16 15 20 20 Si 1.86802 * 120.00242 * 174.14032 * 18 16 15 21 21 H 1.48507 * 109.46784 * 59.99944 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47141 * 300.00266 * 20 18 16 24 24 C 1.46925 * 118.73876 * 53.60945 * 15 14 13 25 25 H 4.44653 * 5.63396 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.46987 * 153.79369 * 3 2 1 27 27 H 1.09001 * 109.47663 * 33.78774 * 3 2 1 28 28 H 1.09004 * 109.47441 * 59.99619 * 4 3 2 29 29 H 1.09005 * 109.46912 * 300.00181 * 4 3 2 30 30 H 1.09005 * 109.46822 * 299.99805 * 5 4 3 31 31 H 1.08996 * 109.46969 * 59.99567 * 5 4 3 32 32 H 0.96998 * 119.99442 * 355.59360 * 8 6 5 33 33 H 1.08992 * 109.47004 * 65.34082 * 10 9 8 34 34 H 1.09004 * 109.47329 * 185.34600 * 10 9 8 35 35 H 0.96704 * 113.99933 * 179.97438 * 11 10 9 36 36 H 1.09008 * 109.46050 * 178.60082 * 12 9 8 37 37 H 1.08988 * 109.46180 * 298.56300 * 12 9 8 38 38 H 1.09002 * 109.49755 * 301.41022 * 13 12 9 39 39 H 1.09000 * 109.52343 * 181.32907 * 13 12 9 40 40 H 1.09005 * 109.58611 * 185.57583 * 14 13 12 41 41 H 1.09007 * 109.70413 * 65.22378 * 14 13 12 42 42 H 0.96996 * 120.00045 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58651 * 186.60233 * 24 15 14 44 44 H 1.08997 * 109.70668 * 66.24922 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.0945 1.4393 5 6 4.6860 -0.0932 1.4394 6 6 5.1885 -0.1875 2.8570 7 8 4.4003 -0.2492 3.7768 8 7 6.5135 -0.2033 3.1028 9 6 7.0025 -0.1974 4.4838 10 6 6.4965 1.0568 5.1993 11 8 6.8705 2.2156 4.4513 12 6 6.4917 -1.4428 5.2119 13 6 6.9701 -2.6973 4.4773 14 6 8.5016 -2.7313 4.4772 15 7 9.0025 -1.4720 3.9099 16 6 9.8893 -1.4809 2.8665 17 1 9.8081 -0.7424 2.0825 18 6 10.8925 -2.4389 2.8163 19 7 11.0641 -3.2657 3.8259 20 14 11.9992 -2.5548 1.3158 21 1 12.7207 -1.2698 1.1325 22 1 12.9824 -3.6508 1.5093 23 1 11.1746 -2.8354 0.1131 24 6 8.5344 -0.2031 4.4838 25 1 -1.0500 -0.0002 0.0001 26 1 3.0089 0.9228 -0.4538 27 1 3.0098 -0.8532 -0.5715 28 1 2.7931 -1.0166 1.8933 29 1 2.7923 0.7595 2.0109 30 1 5.0501 -0.9469 0.8678 31 1 5.0486 0.8292 0.9857 32 1 7.1434 -0.2185 2.3653 33 1 5.4107 1.0137 5.2839 34 1 6.9367 1.1096 6.1951 35 1 6.5815 3.0493 4.8469 36 1 6.8762 -1.4504 6.2318 37 1 5.4021 -1.4287 5.2348 38 1 6.6065 -2.6782 3.4499 39 1 6.5866 -3.5837 4.9825 40 1 8.8484 -3.5685 3.8715 41 1 8.8668 -2.8430 5.4982 42 1 11.7649 -3.9354 3.7906 43 1 8.9029 0.6280 3.8823 44 1 8.9002 -0.1047 5.5058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754853976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:04 Heat of formation + Delta-G solvation = -27.213845 kcal Electronic energy + Delta-G solvation = -24726.648928 eV Core-core repulsion = 21259.575497 eV Total energy + Delta-G solvation = -3467.073431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.03621 -37.64901 -36.01545 -35.55682 -33.78242 -32.53855 -32.00060 -30.45190 -29.96098 -27.64022 -25.42210 -25.03880 -22.81150 -22.12843 -20.81267 -19.90989 -18.65479 -18.28471 -16.97766 -16.74358 -16.59552 -15.86207 -15.24755 -14.84980 -14.66257 -14.34605 -14.02032 -13.79609 -13.45613 -13.35141 -12.94654 -12.77242 -12.55191 -12.44638 -12.13995 -11.84684 -11.60424 -11.39625 -11.13218 -10.98952 -10.96539 -10.78440 -10.46852 -10.32525 -10.19947 -10.17235 -10.09499 -9.81060 -9.63835 -9.53678 -8.98528 -8.50375 -8.39872 -6.55149 -5.83085 -3.39183 2.68368 2.72268 3.08924 3.34455 3.40282 3.40398 3.66204 4.26163 4.43315 4.53042 4.91607 4.98215 5.08900 5.33422 5.35764 5.39078 5.47225 5.51555 5.62180 5.64008 5.70758 5.71597 5.82692 5.91794 6.00779 6.06961 6.10347 6.25434 6.32733 6.45079 6.53261 6.68676 6.73806 6.84776 6.93606 7.17124 7.38891 7.49973 7.66407 7.74888 7.86792 8.13830 8.47128 8.73871 9.19401 9.77156 10.40379 11.24476 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004314 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.080436 B = 6489.287088 C = 7328.874289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.016 4.016 4 C -0.095 4.095 5 C -0.143 4.143 6 C 0.515 3.485 7 O -0.557 6.557 8 N -0.689 5.689 9 C 0.166 3.834 10 C 0.067 3.933 11 O -0.565 6.565 12 C -0.120 4.120 13 C -0.135 4.135 14 C 0.173 3.827 15 N -0.587 5.587 16 C -0.262 4.262 17 H 0.061 0.939 18 C 0.014 3.986 19 N -0.899 5.899 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.148 3.852 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.406 0.594 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.369 0.631 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.018 0.982 42 H 0.255 0.745 43 H 0.066 0.934 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 7.183 -3.083 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.053 4.053 4 C -0.133 4.133 5 C -0.183 4.183 6 C 0.301 3.699 7 O -0.437 6.437 8 N -0.338 5.338 9 C 0.078 3.922 10 C -0.012 4.012 11 O -0.369 6.369 12 C -0.158 4.158 13 C -0.175 4.175 14 C 0.048 3.952 15 N -0.310 5.310 16 C -0.392 4.392 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.541 5.541 20 Si 0.733 3.267 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.021 3.979 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.214 0.786 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.691 6.533 -2.795 15.425 hybrid contribution 0.557 0.244 -0.626 0.873 sum -13.133 6.777 -3.421 15.170 Atomic orbital electron populations 1.24870 0.95970 1.01699 1.01166 1.23190 0.94639 0.99957 1.00112 1.18821 0.84672 1.03376 0.98436 1.21227 0.93410 1.04037 0.94586 1.21666 0.96826 1.04427 0.95380 1.20450 0.82589 0.75869 0.90995 1.90583 1.55723 1.51124 1.46268 1.45796 1.06329 1.72853 1.08818 1.20951 0.97564 0.92280 0.81411 1.22631 0.99423 0.85487 0.93658 1.86512 1.81682 1.15913 1.52758 1.21758 1.01338 0.94355 0.98379 1.22093 1.00542 0.95419 0.99410 1.20751 0.87316 0.90022 0.97113 1.43918 1.50259 0.99036 1.37743 1.19006 1.05774 1.15377 0.99036 0.92179 1.25360 0.96653 0.99548 0.97014 1.69951 1.33325 1.20979 1.29892 0.86384 0.80479 0.77354 0.82511 1.20756 1.21647 1.20857 1.21114 0.88303 0.90901 0.97563 0.76800 0.89504 0.89413 0.90882 0.91010 0.88911 0.88973 0.75914 0.92198 0.93636 0.78558 0.92334 0.90923 0.92862 0.93452 0.90361 0.96365 0.93457 0.91597 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.18 -1.99 13.34 -37.12 -0.50 -2.49 16 3 C -0.02 -0.16 5.70 -29.52 -0.17 -0.32 16 4 C -0.09 -1.08 4.46 -26.73 -0.12 -1.20 16 5 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 6 C 0.51 8.08 7.24 -10.99 -0.08 8.00 16 7 O -0.56 -10.08 12.29 5.55 0.07 -10.02 16 8 N -0.69 -11.49 3.94 -47.50 -0.19 -11.68 16 9 C 0.17 2.94 0.45 -131.70 -0.06 2.88 16 10 C 0.07 1.05 5.63 37.16 0.21 1.26 16 11 O -0.56 -8.30 13.08 -35.23 -0.46 -8.76 16 12 C -0.12 -2.18 4.48 -26.69 -0.12 -2.30 16 13 C -0.14 -2.66 5.93 -26.61 -0.16 -2.82 16 14 C 0.17 4.05 5.21 -3.71 -0.02 4.04 16 15 N -0.59 -13.97 2.84 -172.32 -0.49 -14.46 16 16 C -0.26 -6.81 9.51 -15.06 -0.14 -6.95 16 17 H 0.06 1.52 7.84 -52.48 -0.41 1.10 16 18 C 0.01 0.39 5.12 -17.43 -0.09 0.30 16 19 N -0.90 -25.42 11.31 55.49 0.63 -24.80 16 20 Si 0.90 20.94 29.56 -169.99 -5.02 15.92 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.15 3.06 5.07 -3.71 -0.02 3.04 16 25 H 0.22 1.40 7.80 -54.09 -0.42 0.97 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.41 6.88 8.45 -40.82 -0.34 6.54 16 33 H 0.06 0.98 6.44 -51.93 -0.33 0.65 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.37 3.68 9.12 45.56 0.42 4.10 16 36 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.07 1.35 6.12 -51.94 -0.32 1.04 16 38 H 0.05 1.07 7.53 -51.93 -0.39 0.68 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 2.04 6.50 -51.93 -0.34 1.71 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.07 1.39 7.78 -51.93 -0.40 0.99 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -31.12 356.80 -7.27 -38.39 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.33 Total: 10.06 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.85 Total: -0.03 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.05 Total: -50.94 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.39 Total: -18.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.12 -7.27 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754853976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.173 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds