Wall clock time and date at job start Tue Mar 31 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47331 * 273.79060 * 3 2 1 5 5 C 1.52997 * 109.47524 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47492 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99762 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00028 * 175.58760 * 8 6 5 10 10 C 1.53003 * 109.49963 * 300.66530 * 9 8 6 11 11 O 1.42904 * 109.46864 * 305.33886 * 10 9 8 12 12 C 1.53037 * 109.49889 * 60.76243 * 9 8 6 13 13 C 1.53042 * 109.53578 * 58.58666 * 12 9 8 14 14 C 1.53188 * 109.31512 * 61.36363 * 13 12 9 15 15 N 1.46923 * 108.77549 * 305.36546 * 14 13 12 16 16 C 1.36935 * 120.62884 * 233.58305 * 15 14 13 17 17 H 1.08005 * 119.99911 * 141.83913 * 16 15 14 18 18 C 1.38810 * 120.00379 * 321.84394 * 16 15 14 19 19 N 1.31618 * 120.00165 * 354.13972 * 18 16 15 20 20 Si 1.86802 * 120.00242 * 174.14032 * 18 16 15 21 21 H 1.48507 * 109.46784 * 59.99944 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47141 * 300.00266 * 20 18 16 24 24 C 1.46925 * 118.73876 * 53.60945 * 15 14 13 25 25 H 4.44653 * 5.63396 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.46987 * 153.79369 * 3 2 1 27 27 H 1.09001 * 109.47663 * 33.78774 * 3 2 1 28 28 H 1.09004 * 109.47441 * 59.99619 * 4 3 2 29 29 H 1.09005 * 109.46912 * 300.00181 * 4 3 2 30 30 H 1.09005 * 109.46822 * 299.99805 * 5 4 3 31 31 H 1.08996 * 109.46969 * 59.99567 * 5 4 3 32 32 H 0.96998 * 119.99442 * 355.59360 * 8 6 5 33 33 H 1.08992 * 109.47004 * 65.34082 * 10 9 8 34 34 H 1.09004 * 109.47329 * 185.34600 * 10 9 8 35 35 H 0.96704 * 113.99933 * 179.97438 * 11 10 9 36 36 H 1.09008 * 109.46050 * 178.60082 * 12 9 8 37 37 H 1.08988 * 109.46180 * 298.56300 * 12 9 8 38 38 H 1.09002 * 109.49755 * 301.41022 * 13 12 9 39 39 H 1.09000 * 109.52343 * 181.32907 * 13 12 9 40 40 H 1.09005 * 109.58611 * 185.57583 * 14 13 12 41 41 H 1.09007 * 109.70413 * 65.22378 * 14 13 12 42 42 H 0.96996 * 120.00045 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58651 * 186.60233 * 24 15 14 44 44 H 1.08997 * 109.70668 * 66.24922 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.0945 1.4393 5 6 4.6860 -0.0932 1.4394 6 6 5.1885 -0.1875 2.8570 7 8 4.4003 -0.2492 3.7768 8 7 6.5135 -0.2033 3.1028 9 6 7.0025 -0.1974 4.4838 10 6 6.4965 1.0568 5.1993 11 8 6.8705 2.2156 4.4513 12 6 6.4917 -1.4428 5.2119 13 6 6.9701 -2.6973 4.4773 14 6 8.5016 -2.7313 4.4772 15 7 9.0025 -1.4720 3.9099 16 6 9.8893 -1.4809 2.8665 17 1 9.8081 -0.7424 2.0825 18 6 10.8925 -2.4389 2.8163 19 7 11.0641 -3.2657 3.8259 20 14 11.9992 -2.5548 1.3158 21 1 12.7207 -1.2698 1.1325 22 1 12.9824 -3.6508 1.5093 23 1 11.1746 -2.8354 0.1131 24 6 8.5344 -0.2031 4.4838 25 1 -1.0500 -0.0002 0.0001 26 1 3.0089 0.9228 -0.4538 27 1 3.0098 -0.8532 -0.5715 28 1 2.7931 -1.0166 1.8933 29 1 2.7923 0.7595 2.0109 30 1 5.0501 -0.9469 0.8678 31 1 5.0486 0.8292 0.9857 32 1 7.1434 -0.2185 2.3653 33 1 5.4107 1.0137 5.2839 34 1 6.9367 1.1096 6.1951 35 1 6.5815 3.0493 4.8469 36 1 6.8762 -1.4504 6.2318 37 1 5.4021 -1.4287 5.2348 38 1 6.6065 -2.6782 3.4499 39 1 6.5866 -3.5837 4.9825 40 1 8.8484 -3.5685 3.8715 41 1 8.8668 -2.8430 5.4982 42 1 11.7649 -3.9354 3.7906 43 1 8.9029 0.6280 3.8823 44 1 8.9002 -0.1047 5.5058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754853976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:04 Heat of formation + Delta-G solvation = -48.174091 kcal Electronic energy + Delta-G solvation = -24727.557832 eV Core-core repulsion = 21259.575497 eV Total energy + Delta-G solvation = -3467.982335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39147 -39.05486 -37.37156 -36.44346 -35.38722 -33.93448 -33.13001 -32.28660 -31.39595 -28.56636 -27.26390 -26.57635 -24.04080 -23.68115 -22.33798 -21.22235 -20.08141 -19.08517 -18.63875 -18.15009 -17.81451 -16.90318 -16.82956 -16.52599 -15.87488 -15.62656 -15.45289 -14.98770 -14.84847 -14.66837 -14.43145 -14.24456 -14.01749 -13.60766 -13.42292 -13.23206 -13.07527 -12.83163 -12.74757 -12.49442 -12.41026 -12.24764 -12.00124 -11.89540 -11.74321 -11.47837 -11.22652 -11.10181 -10.95286 -10.94909 -10.52490 -10.33085 -9.74669 -8.51067 -7.84487 -5.43673 1.50956 1.51971 1.58294 1.87072 1.88460 1.95171 2.43917 2.52362 3.32506 3.34033 3.55060 3.68123 3.81606 4.06273 4.10751 4.14605 4.23829 4.28751 4.36971 4.55114 4.56929 4.65580 4.70374 4.75065 4.80090 4.85200 4.90022 4.93857 5.02871 5.09542 5.20991 5.23434 5.24245 5.31208 5.36556 5.53432 5.68077 5.72677 5.82008 6.46053 6.74463 6.84258 6.93788 7.19361 7.47942 7.83373 8.42601 9.20951 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004314 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.080436 B = 6489.287088 C = 7328.874289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.085 4.085 5 C -0.135 4.135 6 C 0.510 3.490 7 O -0.582 6.582 8 N -0.691 5.691 9 C 0.169 3.831 10 C 0.078 3.922 11 O -0.576 6.576 12 C -0.113 4.113 13 C -0.122 4.122 14 C 0.184 3.816 15 N -0.599 5.599 16 C -0.264 4.264 17 H 0.069 0.931 18 C -0.040 4.040 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.273 1.273 24 C 0.154 3.846 25 H 0.242 0.758 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.404 0.596 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.391 0.609 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.046 0.954 41 H -0.005 1.005 42 H 0.249 0.751 43 H 0.061 0.939 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 8.446 -4.446 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.123 4.123 5 C -0.174 4.174 6 C 0.299 3.701 7 O -0.464 6.464 8 N -0.340 5.340 9 C 0.081 3.919 10 C -0.002 4.002 11 O -0.383 6.383 12 C -0.152 4.152 13 C -0.161 4.161 14 C 0.059 3.941 15 N -0.322 5.322 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.237 4.237 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.198 1.198 24 C 0.028 3.972 25 H 0.258 0.742 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.240 0.760 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.240 0.760 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.013 0.987 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.807 7.841 -4.165 17.265 hybrid contribution 0.841 -0.096 -0.164 0.863 sum -13.965 7.745 -4.329 16.546 Atomic orbital electron populations 1.25700 0.97016 1.00806 0.99996 1.23771 0.95716 1.00930 1.01213 1.18829 0.84053 1.04839 0.97129 1.21096 0.93177 1.02358 0.95708 1.21680 0.96748 1.06238 0.92759 1.21116 0.81802 0.74763 0.92455 1.90572 1.56109 1.52157 1.47540 1.45814 1.06865 1.73207 1.08160 1.20775 0.95290 0.93323 0.82528 1.22409 0.98943 0.85004 0.93801 1.86452 1.81857 1.16774 1.53199 1.21687 1.01208 0.93828 0.98450 1.21904 0.97500 0.97010 0.99675 1.20503 0.89626 0.89083 0.94938 1.44076 1.50336 1.00131 1.37672 1.19372 1.05541 1.14911 0.99642 0.91375 1.26095 0.98249 0.99682 0.99630 1.70120 1.34006 1.21814 1.31904 0.85361 0.78512 0.76974 0.79618 1.20144 1.22593 1.19829 1.21094 0.90303 0.89145 0.96657 0.74179 0.87768 0.88157 0.92851 0.92412 0.87387 0.86667 0.76048 0.92656 0.92440 0.76003 0.91927 0.90811 0.93225 0.92146 0.93539 0.98654 0.94150 0.92055 0.96054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 19.25 74.32 1.43 -2.58 16 2 C -0.22 -4.49 13.34 31.13 0.42 -4.08 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.04 16 4 C -0.09 -1.82 4.46 30.59 0.14 -1.68 16 5 C -0.13 -2.83 5.70 29.85 0.17 -2.66 16 6 C 0.51 15.22 7.24 87.66 0.64 15.86 16 7 O -0.58 -20.41 12.29 -3.05 -0.04 -20.45 16 8 N -0.69 -22.09 3.94 -422.57 -1.67 -23.76 16 9 C 0.17 5.81 0.45 3.68 0.00 5.81 16 10 C 0.08 2.29 5.63 71.98 0.41 2.70 16 11 O -0.58 -15.66 13.08 -148.98 -1.95 -17.60 16 12 C -0.11 -4.02 4.48 30.62 0.14 -3.88 16 13 C -0.12 -4.74 5.93 30.67 0.18 -4.56 16 14 C 0.18 8.78 5.21 86.36 0.45 9.23 16 15 N -0.60 -28.65 2.84 -699.09 -1.99 -30.63 16 16 C -0.26 -13.70 9.51 84.03 0.80 -12.90 16 17 H 0.07 3.37 7.84 -2.91 -0.02 3.34 16 18 C -0.04 -2.16 5.12 84.86 0.43 -1.72 16 19 N -0.93 -54.06 11.31 21.65 0.24 -53.82 16 20 Si 0.97 43.14 29.56 68.60 2.03 45.17 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.15 6.28 5.07 86.36 0.44 6.72 16 25 H 0.24 2.58 7.80 -4.42 -0.03 2.54 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 29 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 30 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.40 13.12 8.45 -92.71 -0.78 12.34 16 33 H 0.06 1.72 6.44 -2.39 -0.02 1.70 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.39 6.80 9.12 -74.05 -0.68 6.12 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.07 2.66 6.12 -2.39 -0.01 2.65 16 38 H 0.05 1.96 7.53 -2.39 -0.02 1.95 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.50 6.50 -2.38 -0.02 2.48 16 41 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 43 H 0.06 2.54 7.78 -2.38 -0.02 2.52 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.17 356.80 1.97 -65.19 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.46 Total: 29.69 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.80 Total: 6.20 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.41 Total: -108.20 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.99 Total: -38.05 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.17 1.97 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754853976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.018 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds