Wall clock time and date at job start Tue Mar 31 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46890 * 144.92258 * 3 2 1 5 5 C 1.52999 * 109.46709 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47009 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00004 * 184.91621 * 8 6 5 10 10 C 1.53007 * 109.49548 * 57.36722 * 9 8 6 11 11 O 1.42901 * 109.46831 * 55.39719 * 10 9 8 12 12 C 1.53037 * 109.49705 * 297.30396 * 9 8 6 13 13 C 1.53045 * 109.53712 * 301.37786 * 12 9 8 14 14 C 1.53191 * 109.31521 * 298.63888 * 13 12 9 15 15 N 1.46926 * 108.77716 * 54.62930 * 14 13 12 16 16 C 1.36942 * 120.62728 * 126.36954 * 15 14 13 17 17 H 1.07997 * 120.00230 * 332.79507 * 16 15 14 18 18 C 1.38814 * 119.99640 * 152.79718 * 16 15 14 19 19 N 1.31621 * 119.99841 * 159.58439 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 339.57906 * 18 16 15 21 21 H 1.48502 * 109.46856 * 93.71549 * 20 18 16 22 22 H 1.48501 * 109.46973 * 213.71672 * 20 18 16 23 23 H 1.48495 * 109.46886 * 333.71952 * 20 18 16 24 24 C 1.46928 * 118.74077 * 306.39725 * 15 14 13 25 25 H 4.44643 * 5.63455 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46764 * 24.92055 * 3 2 1 27 27 H 1.08998 * 109.46546 * 264.92168 * 3 2 1 28 28 H 1.08996 * 109.47152 * 59.99817 * 4 3 2 29 29 H 1.08999 * 109.47080 * 299.99745 * 4 3 2 30 30 H 1.09006 * 109.47207 * 60.00117 * 5 4 3 31 31 H 1.08999 * 109.47273 * 299.99788 * 5 4 3 32 32 H 0.96999 * 120.00277 * 4.91545 * 8 6 5 33 33 H 1.08995 * 109.46676 * 295.39654 * 10 9 8 34 34 H 1.08997 * 109.46515 * 175.39676 * 10 9 8 35 35 H 0.96704 * 113.99570 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.46164 * 61.39925 * 12 9 8 37 37 H 1.09002 * 109.45836 * 181.36525 * 12 9 8 38 38 H 1.09000 * 109.49395 * 58.58900 * 13 12 9 39 39 H 1.08999 * 109.49719 * 178.68101 * 13 12 9 40 40 H 1.08995 * 109.58886 * 174.41912 * 14 13 12 41 41 H 1.09007 * 109.58493 * 294.70738 * 14 13 12 42 42 H 0.96998 * 119.99532 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58581 * 293.81617 * 24 15 14 44 44 H 1.09003 * 109.58333 * 173.39395 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.1814 -0.8290 5 6 4.6854 1.1824 -0.8284 6 6 5.1872 2.3451 -1.6455 7 8 4.3988 3.0989 -2.1756 8 7 6.5122 2.5471 -1.7871 9 6 7.0008 3.7361 -2.4898 10 6 6.4568 4.9926 -1.8068 11 8 6.8099 4.9728 -0.4223 12 6 6.5277 3.7001 -3.9447 13 6 7.0441 2.4273 -4.6195 14 6 8.5760 2.4342 -4.6093 15 7 9.0389 2.6145 -3.2265 16 6 9.9253 1.7333 -2.6670 17 1 9.9632 0.7115 -3.0146 18 6 10.7750 2.1535 -1.6529 19 7 11.3262 1.2700 -0.8479 20 14 11.1364 3.9728 -1.4309 21 1 10.1964 4.5461 -0.4345 22 1 12.5315 4.1455 -0.9521 23 1 10.9686 4.6728 -2.7297 24 6 8.5322 3.7580 -2.4554 25 1 -1.0502 -0.0001 0.0003 26 1 3.0097 -0.9312 -0.4330 27 1 3.0092 0.0918 1.0236 28 1 2.7916 2.1131 -0.3960 29 1 2.7921 1.0902 -1.8526 30 1 5.0495 0.2506 -1.2612 31 1 5.0483 1.2738 0.1953 32 1 7.1422 1.9054 -1.4238 33 1 5.3715 5.0182 -1.9047 34 1 6.8852 5.8768 -2.2785 35 1 6.4970 5.7414 0.0744 36 1 5.4381 3.7094 -3.9726 37 1 6.9118 4.5727 -4.4732 38 1 6.6806 1.5547 -4.0768 39 1 6.6873 2.3907 -5.6488 40 1 8.9483 1.4866 -4.9985 41 1 8.9419 3.2529 -5.2290 42 1 11.9202 1.5637 -0.1395 43 1 8.8945 4.6861 -2.8974 44 1 8.8757 3.6837 -1.4236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754853977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:08 Heat of formation + Delta-G solvation = -18.611958 kcal Electronic energy + Delta-G solvation = -25042.531608 eV Core-core repulsion = 21575.831182 eV Total energy + Delta-G solvation = -3466.700425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.13535 -37.83284 -36.11975 -35.55118 -33.77729 -32.67924 -32.22314 -30.75141 -30.28416 -27.65699 -25.56285 -25.30328 -22.80228 -22.51098 -20.78512 -19.97457 -18.81198 -18.27330 -17.14478 -16.96065 -16.60693 -15.86106 -15.53233 -14.96379 -14.64623 -14.37259 -13.97487 -13.84568 -13.64119 -13.45627 -13.29529 -12.99819 -12.67836 -12.37566 -12.29203 -12.09092 -11.81293 -11.57021 -11.48495 -11.23206 -10.95849 -10.70502 -10.50283 -10.30626 -10.28150 -10.17899 -10.06178 -9.82447 -9.73120 -9.49668 -9.09789 -8.64715 -8.42878 -7.03060 -6.00450 -3.37020 2.70030 2.74013 3.07208 3.35517 3.47526 3.48553 3.64674 4.27641 4.47929 4.50575 4.87601 4.93160 5.00871 5.11272 5.22982 5.36435 5.41621 5.51257 5.52913 5.55397 5.60405 5.64956 5.72672 5.76922 5.87789 5.95687 6.09297 6.12309 6.18767 6.23004 6.27607 6.32926 6.38444 6.55456 6.63366 6.74011 6.89864 7.10630 7.51601 7.87498 7.90515 8.14236 8.27653 8.72331 8.88231 9.66605 10.04280 11.14839 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.004539 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.814158 B = 6167.439452 C = 6369.451841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C -0.017 4.017 4 C -0.094 4.094 5 C -0.143 4.143 6 C 0.516 3.484 7 O -0.560 6.560 8 N -0.689 5.689 9 C 0.166 3.834 10 C 0.064 3.936 11 O -0.562 6.562 12 C -0.121 4.121 13 C -0.129 4.129 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.265 4.265 17 H 0.087 0.913 18 C 0.028 3.972 19 N -0.905 5.905 20 Si 0.875 3.125 21 H -0.281 1.281 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.128 3.872 25 H 0.215 0.785 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.370 0.630 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.022 0.978 42 H 0.263 0.737 43 H 0.036 0.964 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 2.178 -0.250 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.178 4.178 3 C -0.054 4.054 4 C -0.132 4.132 5 C -0.183 4.183 6 C 0.303 3.697 7 O -0.440 6.440 8 N -0.339 5.339 9 C 0.078 3.922 10 C -0.016 4.016 11 O -0.366 6.366 12 C -0.160 4.160 13 C -0.168 4.168 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.393 4.393 17 H 0.105 0.895 18 C -0.172 4.172 19 N -0.547 5.547 20 Si 0.705 3.295 21 H -0.208 1.208 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.002 3.998 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.249 0.751 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.216 0.784 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.996 2.083 -0.673 15.155 hybrid contribution 0.238 1.326 0.552 1.456 sum -14.759 3.409 -0.121 15.148 Atomic orbital electron populations 1.24866 0.95963 1.01410 1.01594 1.23201 0.94640 1.00002 0.99949 1.18829 0.84633 1.00099 1.01812 1.21220 0.93408 0.97657 1.00896 1.21670 0.96737 0.98342 1.01576 1.20473 0.82466 0.86169 0.80623 1.90570 1.55741 1.48328 1.49359 1.45841 1.06571 1.25012 1.56521 1.20897 0.96808 0.83580 0.90935 1.22645 0.99865 0.97097 0.81962 1.86563 1.80991 1.48031 1.21004 1.21768 1.01845 0.98590 0.93768 1.21907 0.98248 0.97653 0.98958 1.20990 0.91522 0.99379 0.86126 1.44374 1.50308 1.29380 1.08677 1.18906 1.11838 0.91680 1.16841 0.89513 1.25267 0.97289 0.97008 0.97599 1.69821 1.33735 1.33382 1.17780 0.87053 0.76532 0.87672 0.78237 1.20791 1.23224 1.19729 1.21591 0.89098 0.91131 0.98026 0.76811 0.89369 0.89414 0.91030 0.90954 0.88822 0.88759 0.75143 0.91645 0.93797 0.78447 0.90422 0.92131 0.91999 0.92719 0.91898 0.96029 0.92709 0.94631 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.26 19.25 29.55 0.57 -1.69 16 2 C -0.18 -2.02 13.34 -37.12 -0.50 -2.51 16 3 C -0.02 -0.17 5.70 -29.52 -0.17 -0.34 16 4 C -0.09 -1.09 4.46 -26.73 -0.12 -1.21 16 5 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 6 C 0.52 8.26 7.24 -10.99 -0.08 8.18 16 7 O -0.56 -10.04 12.29 5.56 0.07 -9.97 16 8 N -0.69 -12.05 3.96 -47.49 -0.19 -12.24 16 9 C 0.17 3.01 0.45 -131.69 -0.06 2.95 16 10 C 0.06 1.04 5.61 37.16 0.21 1.25 16 11 O -0.56 -9.33 13.06 -35.23 -0.46 -9.79 16 12 C -0.12 -2.03 4.51 -26.69 -0.12 -2.15 16 13 C -0.13 -2.15 5.93 -26.61 -0.16 -2.31 16 14 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 15 N -0.60 -13.61 2.64 -172.32 -0.46 -14.07 16 16 C -0.26 -6.99 10.04 -15.06 -0.15 -7.14 16 17 H 0.09 2.45 8.05 -52.49 -0.42 2.03 16 18 C 0.03 0.77 5.24 -17.43 -0.09 0.68 16 19 N -0.90 -26.68 13.97 55.49 0.78 -25.90 16 20 Si 0.87 21.96 24.34 -169.99 -4.14 17.82 16 21 H -0.28 -6.96 6.65 56.52 0.38 -6.58 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.74 6.56 56.52 0.37 -6.37 16 24 C 0.13 2.73 2.74 -3.71 -0.01 2.72 16 25 H 0.22 1.42 7.80 -54.08 -0.42 1.00 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.92 8.10 -51.93 -0.42 0.49 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.41 7.73 8.43 -40.82 -0.34 7.39 16 33 H 0.07 1.09 6.30 -51.93 -0.33 0.76 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.37 4.29 9.12 45.56 0.42 4.70 16 36 H 0.08 1.34 6.24 -51.93 -0.32 1.01 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.09 7.53 -51.93 -0.39 0.70 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.04 0.77 7.04 -51.93 -0.37 0.41 16 44 H 0.09 2.08 4.31 -51.93 -0.22 1.86 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.96 349.72 -6.22 -38.18 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.23 Total: 11.41 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.86 Total: -0.72 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.13 Total: -52.21 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.39 Total: -19.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.96 -6.22 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754853977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.567 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds