Wall clock time and date at job start Tue Mar 31 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46890 * 144.92258 * 3 2 1 5 5 C 1.52999 * 109.46709 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47009 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00004 * 184.91621 * 8 6 5 10 10 C 1.53007 * 109.49548 * 57.36722 * 9 8 6 11 11 O 1.42901 * 109.46831 * 55.39719 * 10 9 8 12 12 C 1.53037 * 109.49705 * 297.30396 * 9 8 6 13 13 C 1.53045 * 109.53712 * 301.37786 * 12 9 8 14 14 C 1.53191 * 109.31521 * 298.63888 * 13 12 9 15 15 N 1.46926 * 108.77716 * 54.62930 * 14 13 12 16 16 C 1.36942 * 120.62728 * 126.36954 * 15 14 13 17 17 H 1.07997 * 120.00230 * 332.79507 * 16 15 14 18 18 C 1.38814 * 119.99640 * 152.79718 * 16 15 14 19 19 N 1.31621 * 119.99841 * 159.58439 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 339.57906 * 18 16 15 21 21 H 1.48502 * 109.46856 * 93.71549 * 20 18 16 22 22 H 1.48501 * 109.46973 * 213.71672 * 20 18 16 23 23 H 1.48495 * 109.46886 * 333.71952 * 20 18 16 24 24 C 1.46928 * 118.74077 * 306.39725 * 15 14 13 25 25 H 4.44643 * 5.63455 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46764 * 24.92055 * 3 2 1 27 27 H 1.08998 * 109.46546 * 264.92168 * 3 2 1 28 28 H 1.08996 * 109.47152 * 59.99817 * 4 3 2 29 29 H 1.08999 * 109.47080 * 299.99745 * 4 3 2 30 30 H 1.09006 * 109.47207 * 60.00117 * 5 4 3 31 31 H 1.08999 * 109.47273 * 299.99788 * 5 4 3 32 32 H 0.96999 * 120.00277 * 4.91545 * 8 6 5 33 33 H 1.08995 * 109.46676 * 295.39654 * 10 9 8 34 34 H 1.08997 * 109.46515 * 175.39676 * 10 9 8 35 35 H 0.96704 * 113.99570 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.46164 * 61.39925 * 12 9 8 37 37 H 1.09002 * 109.45836 * 181.36525 * 12 9 8 38 38 H 1.09000 * 109.49395 * 58.58900 * 13 12 9 39 39 H 1.08999 * 109.49719 * 178.68101 * 13 12 9 40 40 H 1.08995 * 109.58886 * 174.41912 * 14 13 12 41 41 H 1.09007 * 109.58493 * 294.70738 * 14 13 12 42 42 H 0.96998 * 119.99532 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58581 * 293.81617 * 24 15 14 44 44 H 1.09003 * 109.58333 * 173.39395 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.1814 -0.8290 5 6 4.6854 1.1824 -0.8284 6 6 5.1872 2.3451 -1.6455 7 8 4.3988 3.0989 -2.1756 8 7 6.5122 2.5471 -1.7871 9 6 7.0008 3.7361 -2.4898 10 6 6.4568 4.9926 -1.8068 11 8 6.8099 4.9728 -0.4223 12 6 6.5277 3.7001 -3.9447 13 6 7.0441 2.4273 -4.6195 14 6 8.5760 2.4342 -4.6093 15 7 9.0389 2.6145 -3.2265 16 6 9.9253 1.7333 -2.6670 17 1 9.9632 0.7115 -3.0146 18 6 10.7750 2.1535 -1.6529 19 7 11.3262 1.2700 -0.8479 20 14 11.1364 3.9728 -1.4309 21 1 10.1964 4.5461 -0.4345 22 1 12.5315 4.1455 -0.9521 23 1 10.9686 4.6728 -2.7297 24 6 8.5322 3.7580 -2.4554 25 1 -1.0502 -0.0001 0.0003 26 1 3.0097 -0.9312 -0.4330 27 1 3.0092 0.0918 1.0236 28 1 2.7916 2.1131 -0.3960 29 1 2.7921 1.0902 -1.8526 30 1 5.0495 0.2506 -1.2612 31 1 5.0483 1.2738 0.1953 32 1 7.1422 1.9054 -1.4238 33 1 5.3715 5.0182 -1.9047 34 1 6.8852 5.8768 -2.2785 35 1 6.4970 5.7414 0.0744 36 1 5.4381 3.7094 -3.9726 37 1 6.9118 4.5727 -4.4732 38 1 6.6806 1.5547 -4.0768 39 1 6.6873 2.3907 -5.6488 40 1 8.9483 1.4866 -4.9985 41 1 8.9419 3.2529 -5.2290 42 1 11.9202 1.5637 -0.1395 43 1 8.8945 4.6861 -2.8974 44 1 8.8757 3.6837 -1.4236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754853977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:07 Heat of formation + Delta-G solvation = -41.662601 kcal Electronic energy + Delta-G solvation = -25043.531158 eV Core-core repulsion = 21575.831182 eV Total energy + Delta-G solvation = -3467.699976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49710 -39.23204 -37.48889 -36.46948 -35.38077 -34.24644 -33.25863 -32.52432 -31.65105 -28.61673 -27.26732 -26.86424 -24.18758 -23.86565 -22.18234 -21.34382 -20.18877 -19.15918 -18.86178 -18.26219 -17.99677 -17.15739 -16.87808 -16.51609 -15.93457 -15.54200 -15.44695 -15.36107 -15.02482 -14.90086 -14.49767 -14.38832 -14.10040 -13.83325 -13.62519 -13.44347 -13.32901 -13.09343 -12.73971 -12.48363 -12.41477 -12.16719 -11.92938 -11.89001 -11.75063 -11.46593 -11.32943 -11.13727 -11.03159 -10.95947 -10.73159 -10.35037 -9.80161 -8.92145 -8.14327 -5.45678 1.35231 1.41799 1.48545 1.81795 1.87876 1.94621 2.38546 2.43537 3.05604 3.25433 3.36280 3.53519 3.75382 3.97647 4.00387 4.11095 4.18858 4.22114 4.25641 4.41933 4.49005 4.52200 4.65284 4.67173 4.72885 4.74128 4.80465 4.83415 4.89619 4.93755 5.05847 5.14245 5.21902 5.22320 5.28469 5.34526 5.47153 5.72949 5.89275 6.16144 6.73799 6.77989 6.86265 6.91932 7.41332 7.63349 8.04626 9.04490 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.004539 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.814158 B = 6167.439452 C = 6369.451841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.217 4.217 3 C -0.013 4.013 4 C -0.083 4.083 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.578 6.578 8 N -0.695 5.695 9 C 0.164 3.836 10 C 0.069 3.931 11 O -0.582 6.582 12 C -0.116 4.116 13 C -0.118 4.118 14 C 0.142 3.858 15 N -0.613 5.613 16 C -0.242 4.242 17 H 0.060 0.940 18 C -0.023 4.023 19 N -0.949 5.949 20 Si 0.931 3.069 21 H -0.277 1.277 22 H -0.316 1.316 23 H -0.264 1.264 24 C 0.131 3.869 25 H 0.243 0.757 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.038 0.962 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.616 3.064 -0.858 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.217 4.217 3 C -0.050 4.050 4 C -0.121 4.121 5 C -0.177 4.177 6 C 0.302 3.698 7 O -0.460 6.460 8 N -0.344 5.344 9 C 0.075 3.925 10 C -0.010 4.010 11 O -0.389 6.389 12 C -0.154 4.154 13 C -0.157 4.157 14 C 0.017 3.983 15 N -0.337 5.337 16 C -0.371 4.371 17 H 0.078 0.922 18 C -0.219 4.219 19 N -0.594 5.594 20 Si 0.762 3.238 21 H -0.204 1.204 22 H -0.245 1.245 23 H -0.189 1.189 24 C 0.005 3.995 25 H 0.259 0.741 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.747 3.007 -1.306 17.065 hybrid contribution 0.678 1.017 0.692 1.404 sum -16.068 4.024 -0.614 16.576 Atomic orbital electron populations 1.25705 0.96979 1.00169 1.00438 1.23724 0.95631 1.01204 1.01111 1.18821 0.84212 0.99697 1.02243 1.21079 0.92790 0.97894 1.00312 1.21693 0.97027 0.97313 1.01659 1.21030 0.81656 0.86735 0.80367 1.90556 1.55919 1.49285 1.50225 1.45908 1.07015 1.24754 1.56771 1.20873 0.94448 0.84804 0.92339 1.22569 0.99688 0.96738 0.82043 1.86513 1.81352 1.49754 1.21316 1.21735 1.01678 0.99069 0.92906 1.21798 0.96086 0.97289 1.00525 1.21150 0.93219 0.99655 0.84250 1.44450 1.49869 1.29098 1.10313 1.18815 1.11421 0.91247 1.15639 0.92187 1.25743 0.98048 0.99972 0.98098 1.69929 1.35493 1.34971 1.19052 0.86144 0.75439 0.83916 0.78338 1.20441 1.24486 1.18903 1.21492 0.91402 0.90406 0.96195 0.74057 0.88094 0.88166 0.92469 0.92325 0.87318 0.87444 0.76114 0.91746 0.92115 0.76034 0.90511 0.90680 0.93154 0.89933 0.92301 0.94706 0.93076 0.94408 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.04 19.25 74.32 1.43 -2.60 16 2 C -0.22 -4.63 13.34 31.13 0.42 -4.22 16 3 C -0.01 -0.24 5.70 28.79 0.16 -0.08 16 4 C -0.08 -1.84 4.46 30.59 0.14 -1.70 16 5 C -0.14 -3.17 5.70 29.85 0.17 -3.00 16 6 C 0.51 15.84 7.24 87.66 0.63 16.47 16 7 O -0.58 -19.99 12.29 -3.03 -0.04 -20.03 16 8 N -0.70 -23.60 3.96 -422.56 -1.67 -25.28 16 9 C 0.16 5.64 0.45 3.68 0.00 5.64 16 10 C 0.07 2.11 5.61 71.98 0.40 2.52 16 11 O -0.58 -18.32 13.06 -148.98 -1.95 -20.27 16 12 C -0.12 -3.57 4.51 30.62 0.14 -3.43 16 13 C -0.12 -3.66 5.93 30.67 0.18 -3.48 16 14 C 0.14 5.17 6.52 86.36 0.56 5.74 16 15 N -0.61 -27.07 2.64 -699.08 -1.85 -28.91 16 16 C -0.24 -12.86 10.04 84.03 0.84 -12.01 16 17 H 0.06 3.47 8.05 -2.91 -0.02 3.45 16 18 C -0.02 -1.29 5.24 84.86 0.44 -0.85 16 19 N -0.95 -57.24 13.97 21.65 0.30 -56.94 16 20 Si 0.93 45.78 24.34 68.60 1.67 47.45 16 21 H -0.28 -13.35 6.65 99.48 0.66 -12.69 16 22 H -0.32 -15.96 7.11 99.48 0.71 -15.26 16 23 H -0.26 -12.47 6.56 99.48 0.65 -11.82 16 24 C 0.13 5.39 2.74 86.36 0.24 5.62 16 25 H 0.24 2.61 7.80 -4.41 -0.03 2.58 16 26 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 29 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.40 15.03 8.43 -92.71 -0.78 14.25 16 33 H 0.06 2.01 6.30 -2.39 -0.02 2.00 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.39 8.28 9.12 -74.05 -0.68 7.60 16 36 H 0.08 2.45 6.24 -2.39 -0.01 2.43 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.68 7.53 -2.39 -0.02 1.66 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 2.17 7.93 -2.39 -0.02 2.16 16 41 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.04 1.55 7.04 -2.39 -0.02 1.53 16 44 H 0.06 2.85 4.31 -2.39 -0.01 2.84 16 Total: -1.00 -68.61 349.72 1.68 -66.93 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.55 Total: 32.42 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.76 Total: 4.61 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -3.22 Total: -111.13 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.98 Total: -40.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -68.61 1.68 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754853977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.272 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds