Wall clock time and date at job start Tue Mar 31 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47293 * 2 1 4 4 C 1.53000 * 109.47226 * 239.99953 * 2 1 3 5 5 C 1.47197 * 109.46996 * 120.00111 * 2 1 3 6 6 C 2.64599 * 109.47078 * 120.00076 * 2 1 3 7 7 C 4.07799 * 109.47123 * 120.00035 * 2 1 3 8 8 O 1.21615 * 119.99635 * 111.18734 * 7 6 5 9 9 N 1.34776 * 120.00258 * 291.19144 * 7 6 5 10 10 C 1.47144 * 120.98031 * 359.97438 * 9 7 6 11 11 C 1.53302 * 108.38811 * 230.55823 * 10 9 7 12 12 O 1.42959 * 109.22048 * 307.70059 * 11 10 9 13 13 C 1.42963 * 114.16598 * 62.58089 * 12 11 10 14 14 H 1.08999 * 109.51896 * 57.34174 * 13 12 11 15 15 C 1.53000 * 109.55510 * 177.47077 * 13 12 11 16 16 N 1.46507 * 109.46866 * 299.76843 * 15 13 12 17 17 C 1.36938 * 119.99961 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99540 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00528 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47354 * 90.00036 * 21 19 17 23 23 H 1.48502 * 109.47101 * 210.00170 * 21 19 17 24 24 H 1.48504 * 109.46813 * 329.99715 * 21 19 17 25 25 C 1.47150 * 120.98211 * 180.02562 * 9 7 6 26 26 H 1.09004 * 109.46941 * 299.99982 * 1 2 3 27 27 H 1.08996 * 109.47275 * 59.99901 * 1 2 3 28 28 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47058 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47041 * 300.00242 * 3 2 1 31 31 H 1.09002 * 109.46647 * 59.99879 * 3 2 1 32 32 H 1.09001 * 109.46971 * 300.00263 * 4 2 1 33 33 H 1.08996 * 109.46875 * 59.99901 * 4 2 1 34 34 H 1.08999 * 109.47025 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.68529 * 110.83375 * 10 9 7 36 36 H 1.09008 * 109.71656 * 350.30298 * 10 9 7 37 37 H 1.08998 * 109.51611 * 187.77360 * 11 10 9 38 38 H 1.09001 * 109.54872 * 67.64969 * 11 10 9 39 39 H 1.09005 * 109.47088 * 59.76410 * 15 13 12 40 40 H 1.08996 * 109.47346 * 179.76964 * 15 13 12 41 41 H 0.97005 * 119.99789 * 359.97438 * 16 15 13 42 42 H 0.97001 * 120.00446 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.68655 * 9.71252 * 25 9 7 44 44 H 1.09005 * 109.67857 * 249.16387 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.8893 -1.9224 3.3297 8 8 3.8658 -2.6439 3.2591 9 7 2.2565 -1.7582 4.5082 10 6 1.0735 -0.8901 4.6182 11 6 1.2888 0.0744 5.7902 12 8 1.6380 -0.6737 6.9573 13 6 2.8632 -1.4013 6.8412 14 1 3.6742 -0.7132 6.6026 15 6 3.1658 -2.1090 8.1635 16 7 3.2944 -1.1142 9.2314 17 6 3.5660 -1.5158 10.5121 18 1 3.6858 -2.5658 10.7349 19 6 3.6883 -0.5733 11.5237 20 7 3.5437 0.7064 11.2520 21 14 4.0595 -1.1211 13.2707 22 1 5.5298 -1.1653 13.4738 23 1 3.4560 -0.1607 14.2294 24 1 3.4874 -2.4726 13.4978 25 6 2.7288 -2.4410 5.7232 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 0.1876 -1.4981 4.8012 36 1 0.9458 -0.3239 3.6955 37 1 0.3709 0.6319 5.9763 38 1 2.0936 0.7685 5.5482 39 1 2.3536 -2.7955 8.4024 40 1 4.0979 -2.6665 8.0722 41 1 3.1871 -0.1712 9.0312 42 1 3.6289 1.3650 11.9590 43 1 3.6978 -2.9019 5.5322 44 1 2.0098 -3.2055 6.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755002217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:13 Heat of formation + Delta-G solvation = -19.577977 kcal Electronic energy + Delta-G solvation = -23310.087865 eV Core-core repulsion = 19843.345550 eV Total energy + Delta-G solvation = -3466.742315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38166 -38.37414 -37.90283 -35.09577 -34.40321 -32.72601 -32.01598 -30.16757 -28.26185 -27.79306 -27.77843 -26.06531 -23.82620 -23.49573 -22.13432 -20.97858 -20.20450 -18.14018 -17.08329 -16.77213 -16.34076 -16.01634 -15.59073 -15.12472 -14.78861 -14.73858 -14.54823 -14.50714 -14.03908 -13.44050 -13.14040 -12.94636 -12.89181 -12.74172 -12.51090 -12.23099 -12.21327 -12.18432 -11.74601 -11.73162 -11.60683 -11.02071 -10.89358 -10.78553 -10.77037 -10.58135 -10.46039 -10.22298 -10.01876 -9.91448 -9.67482 -8.84877 -8.61869 -6.87409 -5.71058 -2.99769 1.35788 2.01198 2.70861 3.32339 3.47389 3.52080 3.54076 3.63413 3.93106 4.42104 4.43938 4.44955 4.58521 4.72144 4.80948 4.88268 5.08511 5.12005 5.13028 5.13954 5.26483 5.28982 5.36112 5.36578 5.42412 5.55032 5.60641 5.61688 5.64377 5.70169 5.77547 5.78416 5.85300 5.93807 6.22749 6.28833 6.56612 6.69947 6.96097 7.09410 7.44222 7.73697 7.87149 8.47050 9.58829 10.15929 10.51996 11.51790 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.002665 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.012532 B =10502.704617 C =10870.500559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.073 4.073 6 C -0.214 4.214 7 C 0.633 3.367 8 O -0.524 6.524 9 N -0.602 5.602 10 C 0.073 3.927 11 C 0.047 3.953 12 O -0.355 6.355 13 C 0.073 3.927 14 H 0.064 0.936 15 C 0.164 3.836 16 N -0.726 5.726 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.087 3.913 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.388 0.612 42 H 0.254 0.746 43 H 0.105 0.895 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 0.298 -25.837 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.037 3.963 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.075 4.075 6 C -0.217 4.217 7 C 0.422 3.578 8 O -0.401 6.401 9 N -0.335 5.335 10 C -0.050 4.050 11 C -0.032 4.032 12 O -0.273 6.273 13 C 0.014 3.986 14 H 0.082 0.918 15 C 0.035 3.965 16 N -0.371 5.371 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.036 4.036 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.222 0.778 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.714 -0.209 -25.529 26.670 hybrid contribution 0.246 0.112 0.675 0.727 sum -7.468 -0.096 -24.854 25.952 Atomic orbital electron populations 1.21910 0.92145 1.02872 1.02956 1.17954 0.96020 0.94445 0.87911 1.21909 1.01906 0.93172 1.02947 1.21915 1.01922 1.00625 0.95508 1.22506 0.96011 0.94254 0.94768 1.20606 1.02475 1.02053 0.96541 1.14751 0.82333 0.80343 0.80400 1.90855 1.25937 1.38522 1.84818 1.47980 1.29860 1.47328 1.08330 1.22541 0.87971 0.93776 1.00706 1.22917 1.01724 0.92982 0.85535 1.88172 1.40383 1.63617 1.35131 1.22817 0.86924 0.92912 0.95941 0.91759 1.20629 0.98083 0.92422 0.85330 1.42214 1.85867 1.05020 1.03949 1.19229 1.40206 0.92601 0.84956 0.91115 1.24744 1.02858 0.95298 0.98116 1.69673 1.56764 0.99560 1.32079 0.86175 0.77828 0.77389 0.84704 1.21754 1.21801 1.20749 1.22439 1.02561 0.95657 0.82897 0.91796 0.91057 0.91934 0.91853 0.91031 0.91785 0.91933 0.91130 0.91835 0.90045 0.89217 0.87588 0.92759 0.95268 0.94557 0.77820 0.93569 0.87670 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.43 37.16 0.31 -0.42 16 2 C 0.04 0.25 0.95 -157.29 -0.15 0.10 16 3 C -0.14 -0.82 8.43 37.16 0.31 -0.50 16 4 C -0.14 -0.84 8.43 37.16 0.31 -0.52 16 5 C -0.07 -0.75 11.74 -37.12 -0.44 -1.18 16 6 C -0.21 -2.73 11.62 -38.84 -0.45 -3.18 16 7 C 0.63 9.58 7.56 -14.33 -0.11 9.47 16 8 O -0.52 -9.61 16.55 5.26 0.09 -9.52 16 9 N -0.60 -8.32 3.02 -175.17 -0.53 -8.85 16 10 C 0.07 0.81 6.52 -3.53 -0.02 0.79 16 11 C 0.05 0.60 6.99 37.31 0.26 0.86 16 12 O -0.36 -6.27 10.14 -35.23 -0.36 -6.63 16 13 C 0.07 1.27 2.86 -26.60 -0.08 1.19 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.16 3.38 5.96 -4.04 -0.02 3.36 16 16 N -0.73 -19.10 5.50 -59.90 -0.33 -19.43 16 17 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.42 5.50 -17.44 -0.10 -0.51 16 20 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 21 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.09 1.28 5.92 -3.55 -0.02 1.26 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.83 6.43 -51.92 -0.33 0.50 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.39 10.85 7.55 -40.82 -0.31 10.54 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.11 1.59 7.08 -51.93 -0.37 1.22 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -34.62 367.51 -7.54 -42.16 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.32 Total: 3.38 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -0.33 Total: 3.70 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.13 Total: -56.41 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.27 Total: -16.15 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.62 -7.54 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.587 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds