Wall clock time and date at job start Tue Mar 31 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47293 * 2 1 4 4 C 1.53000 * 109.47226 * 239.99953 * 2 1 3 5 5 C 1.47197 * 109.46996 * 120.00111 * 2 1 3 6 6 C 2.64599 * 109.47078 * 120.00076 * 2 1 3 7 7 C 4.07799 * 109.47123 * 120.00035 * 2 1 3 8 8 O 1.21615 * 119.99635 * 111.18734 * 7 6 5 9 9 N 1.34776 * 120.00258 * 291.19144 * 7 6 5 10 10 C 1.47144 * 120.98031 * 359.97438 * 9 7 6 11 11 C 1.53302 * 108.38811 * 230.55823 * 10 9 7 12 12 O 1.42959 * 109.22048 * 307.70059 * 11 10 9 13 13 C 1.42963 * 114.16598 * 62.58089 * 12 11 10 14 14 H 1.08999 * 109.51896 * 57.34174 * 13 12 11 15 15 C 1.53000 * 109.55510 * 177.47077 * 13 12 11 16 16 N 1.46507 * 109.46866 * 299.76843 * 15 13 12 17 17 C 1.36938 * 119.99961 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99540 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00528 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47354 * 90.00036 * 21 19 17 23 23 H 1.48502 * 109.47101 * 210.00170 * 21 19 17 24 24 H 1.48504 * 109.46813 * 329.99715 * 21 19 17 25 25 C 1.47150 * 120.98211 * 180.02562 * 9 7 6 26 26 H 1.09004 * 109.46941 * 299.99982 * 1 2 3 27 27 H 1.08996 * 109.47275 * 59.99901 * 1 2 3 28 28 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47058 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47041 * 300.00242 * 3 2 1 31 31 H 1.09002 * 109.46647 * 59.99879 * 3 2 1 32 32 H 1.09001 * 109.46971 * 300.00263 * 4 2 1 33 33 H 1.08996 * 109.46875 * 59.99901 * 4 2 1 34 34 H 1.08999 * 109.47025 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.68529 * 110.83375 * 10 9 7 36 36 H 1.09008 * 109.71656 * 350.30298 * 10 9 7 37 37 H 1.08998 * 109.51611 * 187.77360 * 11 10 9 38 38 H 1.09001 * 109.54872 * 67.64969 * 11 10 9 39 39 H 1.09005 * 109.47088 * 59.76410 * 15 13 12 40 40 H 1.08996 * 109.47346 * 179.76964 * 15 13 12 41 41 H 0.97005 * 119.99789 * 359.97438 * 16 15 13 42 42 H 0.97001 * 120.00446 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.68655 * 9.71252 * 25 9 7 44 44 H 1.09005 * 109.67857 * 249.16387 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.8893 -1.9224 3.3297 8 8 3.8658 -2.6439 3.2591 9 7 2.2565 -1.7582 4.5082 10 6 1.0735 -0.8901 4.6182 11 6 1.2888 0.0744 5.7902 12 8 1.6380 -0.6737 6.9573 13 6 2.8632 -1.4013 6.8412 14 1 3.6742 -0.7132 6.6026 15 6 3.1658 -2.1090 8.1635 16 7 3.2944 -1.1142 9.2314 17 6 3.5660 -1.5158 10.5121 18 1 3.6858 -2.5658 10.7349 19 6 3.6883 -0.5733 11.5237 20 7 3.5437 0.7064 11.2520 21 14 4.0595 -1.1211 13.2707 22 1 5.5298 -1.1653 13.4738 23 1 3.4560 -0.1607 14.2294 24 1 3.4874 -2.4726 13.4978 25 6 2.7288 -2.4410 5.7232 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 0.1876 -1.4981 4.8012 36 1 0.9458 -0.3239 3.6955 37 1 0.3709 0.6319 5.9763 38 1 2.0936 0.7685 5.5482 39 1 2.3536 -2.7955 8.4024 40 1 4.0979 -2.6665 8.0722 41 1 3.1871 -0.1712 9.0312 42 1 3.6289 1.3650 11.9590 43 1 3.6978 -2.9019 5.5322 44 1 2.0098 -3.2055 6.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755002217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:13 Heat of formation + Delta-G solvation = -42.670583 kcal Electronic energy + Delta-G solvation = -23311.089236 eV Core-core repulsion = 19843.345550 eV Total energy + Delta-G solvation = -3467.743685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55789 -39.62693 -38.49805 -36.70997 -35.87890 -34.06729 -33.32497 -31.85305 -29.50630 -28.21605 -28.18717 -27.64883 -25.29260 -24.76069 -23.48973 -22.28617 -21.16530 -19.34194 -19.03599 -17.99989 -17.44859 -16.92706 -16.76479 -16.64418 -16.08163 -15.89733 -15.48764 -15.22873 -15.22220 -15.04529 -14.54657 -14.43940 -14.06073 -13.55731 -13.33331 -13.31825 -13.06676 -12.80795 -12.76657 -12.66462 -12.61463 -12.32415 -12.28876 -12.27235 -12.07255 -11.92361 -11.82049 -11.50161 -11.35919 -11.27484 -11.15159 -10.96091 -9.79994 -9.01049 -7.93852 -5.23534 0.35359 1.08678 1.48016 1.50594 1.58997 1.68910 2.31267 2.56576 2.68236 2.80150 3.39883 3.46828 3.72989 3.83859 3.90474 3.94475 3.95345 4.00262 4.08200 4.22885 4.27264 4.38191 4.46106 4.59012 4.68900 4.73733 4.75455 4.78023 4.84105 4.92282 4.96347 4.96803 5.04387 5.06502 5.11126 5.20660 5.35022 5.37554 5.48799 5.99732 6.09439 6.16817 6.27498 6.73362 7.33719 8.07317 8.32252 9.29998 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.002665 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.012532 B =10502.704617 C =10870.500559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.031 3.969 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.031 4.031 6 C -0.266 4.266 7 C 0.633 3.367 8 O -0.568 6.568 9 N -0.601 5.601 10 C 0.079 3.921 11 C 0.041 3.959 12 O -0.383 6.383 13 C 0.086 3.914 14 H 0.049 0.951 15 C 0.161 3.839 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.096 3.904 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.098 0.902 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 0.394 -27.472 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.033 4.033 6 C -0.269 4.269 7 C 0.423 3.577 8 O -0.449 6.449 9 N -0.333 5.333 10 C -0.043 4.043 11 C -0.036 4.036 12 O -0.302 6.302 13 C 0.027 3.973 14 H 0.067 0.933 15 C 0.034 3.966 16 N -0.383 5.383 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.027 4.027 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.258 -0.139 -27.189 28.722 hybrid contribution 0.660 0.126 1.042 1.240 sum -8.598 -0.012 -26.147 27.524 Atomic orbital electron populations 1.21935 0.90391 1.03117 1.04259 1.18332 0.97343 0.94754 0.86516 1.21942 1.01346 0.92406 1.04196 1.21950 1.01374 1.00681 0.95993 1.23362 0.93618 0.92166 0.94190 1.20306 1.05039 1.04237 0.97344 1.15013 0.81653 0.79795 0.81211 1.90815 1.27881 1.40630 1.85609 1.48044 1.30318 1.47283 1.07638 1.22666 0.87293 0.93459 1.00902 1.23195 1.02648 0.93025 0.84713 1.88112 1.39989 1.64265 1.37828 1.22491 0.86794 0.93042 0.94932 0.93309 1.20774 0.98493 0.91776 0.85594 1.42406 1.85897 1.05396 1.04631 1.19675 1.39000 0.93033 0.86114 0.90296 1.25629 1.03571 0.95412 1.02366 1.69840 1.58483 1.00672 1.33104 0.85079 0.77539 0.77338 0.79412 1.21342 1.22119 1.19267 1.22235 1.02868 0.95036 0.82584 0.91624 0.88724 0.92243 0.92835 0.88510 0.91889 0.92368 0.88499 0.92804 0.88373 0.87002 0.84985 0.93240 0.94797 0.93685 0.79284 0.93997 0.88346 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.43 71.98 0.61 -0.39 16 2 C 0.03 0.33 0.95 -53.99 -0.05 0.28 16 3 C -0.14 -1.24 8.43 71.98 0.61 -0.64 16 4 C -0.14 -1.33 8.43 71.98 0.61 -0.72 16 5 C -0.03 -0.59 11.74 31.12 0.37 -0.22 16 6 C -0.27 -6.69 11.62 30.02 0.35 -6.34 16 7 C 0.63 19.39 7.56 85.49 0.65 20.03 16 8 O -0.57 -21.58 16.55 -4.08 -0.07 -21.65 16 9 N -0.60 -16.41 3.02 -826.37 -2.50 -18.91 16 10 C 0.08 1.62 6.52 86.36 0.56 2.19 16 11 C 0.04 1.02 6.99 72.08 0.50 1.52 16 12 O -0.38 -13.50 10.14 -148.98 -1.51 -15.01 16 13 C 0.09 3.04 2.86 30.68 0.09 3.13 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.16 6.70 5.96 86.38 0.51 7.22 16 16 N -0.74 -39.62 5.50 -343.44 -1.89 -41.51 16 17 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 21 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.10 2.82 5.92 86.34 0.51 3.33 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.83 6.43 -2.38 -0.02 1.82 16 37 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.38 21.61 7.55 -92.70 -0.70 20.91 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.10 3.05 7.08 -2.39 -0.02 3.04 16 44 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -76.08 367.51 3.25 -72.83 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.28 Total: 24.07 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.62 Total: 11.89 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.10 Total: -121.27 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.58 Total: -36.66 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.08 3.25 -72.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755002217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds