Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00371 * 2 1 4 4 C 1.52997 * 109.47055 * 125.00254 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.47124 * 121.05273 * 359.71365 * 8 6 5 10 10 C 1.52768 * 108.97481 * 232.16987 * 9 8 6 11 11 O 1.43104 * 109.42524 * 306.12277 * 10 9 8 12 12 C 1.42493 * 113.96870 * 59.82436 * 11 10 9 13 13 C 1.53469 * 113.75822 * 73.17648 * 12 11 10 14 14 N 1.47671 * 85.96925 * 91.28456 * 13 12 11 15 15 C 1.36939 * 134.45490 * 204.30696 * 14 13 12 16 16 H 1.07999 * 120.00346 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00217 * 359.97438 * 15 14 13 18 18 N 1.31618 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00404 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47087 * 89.99854 * 19 17 15 21 21 H 1.48502 * 109.47463 * 209.99865 * 19 17 15 22 22 H 1.48499 * 109.47131 * 330.00044 * 19 17 15 23 23 C 1.47670 * 91.08938 * 24.29275 * 14 13 12 24 24 C 1.47340 * 121.05671 * 179.97438 * 8 6 5 25 25 H 1.08002 * 119.99264 * 359.97438 * 1 2 3 26 26 H 1.07992 * 119.99956 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99832 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47197 * 5.00457 * 3 2 1 29 29 H 1.09001 * 109.47328 * 244.99984 * 3 2 1 30 30 H 1.09001 * 109.47502 * 60.00512 * 4 3 2 31 31 H 1.09001 * 109.47289 * 300.00308 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 34 34 H 1.08995 * 109.60015 * 352.00495 * 9 8 6 35 35 H 1.09007 * 109.59037 * 112.46194 * 9 8 6 36 36 H 1.09004 * 109.56515 * 186.06490 * 10 9 8 37 37 H 1.08997 * 109.36006 * 66.05570 * 10 9 8 38 38 H 1.09002 * 113.79123 * 205.54361 * 13 12 11 39 39 H 1.08999 * 113.79675 * 337.02248 * 13 12 11 40 40 H 0.97000 * 120.00716 * 180.02562 * 18 17 15 41 41 H 1.09001 * 113.78761 * 221.43964 * 23 14 13 42 42 H 1.08993 * 113.89963 * 89.98147 * 23 14 13 43 43 H 1.08998 * 109.74722 * 251.23738 * 24 8 6 44 44 H 1.09002 * 109.74698 * 11.91255 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7998 2.6582 1.1820 6 6 4.7572 2.6854 2.3454 7 8 4.8213 1.7383 3.1003 8 7 5.5415 3.7626 2.5477 9 6 5.4864 4.9220 1.6436 10 6 6.9014 5.2509 1.1708 11 8 7.7557 5.4187 2.3065 12 6 7.8435 4.2664 3.1401 13 6 8.6725 3.1262 2.5335 14 7 9.8245 3.7326 3.2305 15 6 11.1800 3.7159 3.0366 16 1 11.8284 4.2589 3.7083 17 6 11.7207 3.0010 1.9767 18 7 10.9307 2.3388 1.1584 19 14 13.5696 2.9788 1.7117 20 1 14.1630 1.8404 2.4581 21 1 13.8604 2.8264 0.2634 22 1 14.1555 4.2519 2.2029 23 6 8.9291 4.3645 4.2202 24 6 6.4853 3.8142 3.6779 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 3.7401 0.5064 1.0920 31 1 2.4774 1.2353 2.1130 32 1 4.3576 2.7561 0.2506 33 1 3.0947 3.4844 1.2718 34 1 4.8607 4.6852 0.7831 35 1 5.0730 5.7798 2.1740 36 1 6.8866 6.1716 0.5875 37 1 7.2746 4.4346 0.5524 38 1 8.4022 2.1388 2.9078 39 1 8.7456 3.1656 1.4467 40 1 11.3085 1.8390 0.4179 41 1 9.2061 5.3878 4.4735 42 1 8.7340 3.7470 5.0969 43 1 6.1288 4.5252 4.4232 44 1 6.5768 2.8251 4.1268 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755050620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = -1.495278 kcal Electronic energy + Delta-G solvation = -24260.798576 eV Core-core repulsion = 20794.840386 eV Total energy + Delta-G solvation = -3465.958190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39366 -38.79726 -36.29639 -36.07394 -34.39655 -32.64206 -32.16585 -30.02394 -28.34895 -27.25246 -25.63311 -25.06348 -23.28143 -22.48481 -21.39217 -20.08999 -19.10407 -18.68114 -17.11365 -16.79909 -16.17826 -16.10652 -15.45973 -15.27878 -14.93832 -14.58658 -14.18629 -14.13750 -13.77863 -13.48688 -13.38137 -13.28816 -12.75462 -12.46507 -12.30426 -12.07341 -11.78583 -11.64899 -11.32519 -11.12182 -11.06704 -10.87723 -10.84256 -10.78725 -10.63826 -10.22505 -9.97073 -9.62931 -9.56377 -9.47683 -9.21953 -8.80924 -8.21642 -6.86215 -5.73414 -3.05649 2.06007 2.74568 3.02205 3.41484 3.45854 3.48071 4.05991 4.43935 4.47314 4.58830 4.78940 4.93162 4.97930 5.04261 5.08952 5.13706 5.26219 5.27004 5.30863 5.36279 5.43403 5.49458 5.58786 5.60742 5.70407 5.77503 5.84251 5.98769 6.00110 6.09836 6.19981 6.31469 6.41079 6.47688 6.50759 6.55098 6.59858 7.02541 7.20571 7.48847 7.51791 7.82768 7.99830 8.28398 9.06469 9.73192 10.59789 11.43697 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003481 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.684425 B = 8042.563236 C = 8672.296568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.139 4.139 6 C 0.515 3.485 7 O -0.540 6.540 8 N -0.612 5.612 9 C 0.074 3.926 10 C 0.046 3.954 11 O -0.342 6.342 12 C 0.049 3.951 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.218 4.218 16 H 0.081 0.919 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.136 3.864 24 C 0.099 3.901 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 3.131 -2.591 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.179 4.179 6 C 0.304 3.696 7 O -0.417 6.417 8 N -0.346 5.346 9 C -0.049 4.049 10 C -0.032 4.032 11 O -0.260 6.260 12 C 0.008 3.992 13 C 0.026 3.974 14 N -0.330 5.330 15 C -0.345 4.345 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.009 3.991 24 C -0.024 4.024 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.949 2.715 -2.316 19.282 hybrid contribution 0.881 -0.306 -0.311 0.983 sum -18.068 2.409 -2.628 18.416 Atomic orbital electron populations 1.23826 0.95971 1.01688 1.02311 1.22995 0.96015 0.98739 0.98838 1.20808 0.98167 0.95360 0.98972 1.21293 0.97689 0.96449 0.98374 1.21713 0.98080 1.00413 0.97713 1.20665 0.80938 0.81606 0.86440 1.90694 1.68438 1.34798 1.47816 1.48192 1.39961 1.17291 1.29148 1.22347 0.99372 0.88892 0.94306 1.22787 0.88327 1.02613 0.89490 1.87931 1.66410 1.34884 1.36730 1.23697 0.91855 0.89291 0.94399 1.22670 0.83540 0.91858 0.99290 1.45792 1.01473 1.56905 1.28799 1.19002 0.79975 1.25942 1.09623 0.90121 1.24773 0.97971 0.99827 0.97950 1.69816 1.33172 1.36037 1.17964 0.86100 0.84777 0.77697 0.77074 1.21654 1.21680 1.20600 1.22487 0.87200 0.97674 0.91707 1.22240 0.88536 1.03403 0.88238 0.88716 0.88674 0.87297 0.91544 0.90785 0.90820 0.91143 0.88764 0.89102 0.89135 0.90736 0.88135 0.92146 0.94919 0.90638 0.93738 0.92624 0.93257 0.91432 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 14.32 29.01 0.42 -1.14 16 2 C -0.15 -1.26 9.52 -36.03 -0.34 -1.61 16 3 C -0.10 -0.78 5.66 -27.89 -0.16 -0.94 16 4 C -0.10 -1.04 4.49 -26.73 -0.12 -1.16 16 5 C -0.14 -1.41 4.07 -27.88 -0.11 -1.53 16 6 C 0.51 7.63 7.71 -10.99 -0.08 7.55 16 7 O -0.54 -10.09 15.48 5.56 0.09 -10.00 16 8 N -0.61 -8.92 3.03 -172.69 -0.52 -9.45 16 9 C 0.07 0.85 6.47 -3.82 -0.02 0.82 16 10 C 0.05 0.66 6.87 37.04 0.25 0.92 16 11 O -0.34 -6.55 10.52 -35.23 -0.37 -6.92 16 12 C 0.05 0.97 1.21 -90.28 -0.11 0.86 16 13 C 0.15 3.73 6.65 -3.17 -0.02 3.71 16 14 N -0.60 -16.04 3.70 -180.30 -0.67 -16.71 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -27.95 11.39 55.49 0.63 -27.32 16 19 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 2.87 8.34 -3.18 -0.03 2.85 16 24 C 0.10 1.64 5.79 -3.62 -0.02 1.62 16 25 H 0.09 0.66 7.84 -52.49 -0.41 0.24 16 26 H 0.09 0.65 8.06 -52.49 -0.42 0.23 16 27 H 0.11 0.92 8.06 -52.49 -0.42 0.49 16 28 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.84 7.68 -51.93 -0.40 0.44 16 33 H 0.09 0.70 8.00 -51.93 -0.42 0.29 16 34 H 0.09 0.74 6.03 -51.93 -0.31 0.43 16 35 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.99 7.19 -51.93 -0.37 0.62 16 38 H 0.03 0.85 7.94 -51.93 -0.41 0.44 16 39 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -34.69 355.22 -8.30 -43.00 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.18 Total: -0.67 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.61 Total: 5.14 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.56 Total: -53.48 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.28 Total: -16.92 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.69 -8.30 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755050620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.501 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds