Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00371 * 2 1 4 4 C 1.52997 * 109.47055 * 125.00254 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.47124 * 121.05273 * 359.71365 * 8 6 5 10 10 C 1.52768 * 108.97481 * 232.16987 * 9 8 6 11 11 O 1.43104 * 109.42524 * 306.12277 * 10 9 8 12 12 C 1.42493 * 113.96870 * 59.82436 * 11 10 9 13 13 C 1.53469 * 113.75822 * 73.17648 * 12 11 10 14 14 N 1.47671 * 85.96925 * 91.28456 * 13 12 11 15 15 C 1.36939 * 134.45490 * 204.30696 * 14 13 12 16 16 H 1.07999 * 120.00346 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00217 * 359.97438 * 15 14 13 18 18 N 1.31618 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00404 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47087 * 89.99854 * 19 17 15 21 21 H 1.48502 * 109.47463 * 209.99865 * 19 17 15 22 22 H 1.48499 * 109.47131 * 330.00044 * 19 17 15 23 23 C 1.47670 * 91.08938 * 24.29275 * 14 13 12 24 24 C 1.47340 * 121.05671 * 179.97438 * 8 6 5 25 25 H 1.08002 * 119.99264 * 359.97438 * 1 2 3 26 26 H 1.07992 * 119.99956 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99832 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47197 * 5.00457 * 3 2 1 29 29 H 1.09001 * 109.47328 * 244.99984 * 3 2 1 30 30 H 1.09001 * 109.47502 * 60.00512 * 4 3 2 31 31 H 1.09001 * 109.47289 * 300.00308 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 34 34 H 1.08995 * 109.60015 * 352.00495 * 9 8 6 35 35 H 1.09007 * 109.59037 * 112.46194 * 9 8 6 36 36 H 1.09004 * 109.56515 * 186.06490 * 10 9 8 37 37 H 1.08997 * 109.36006 * 66.05570 * 10 9 8 38 38 H 1.09002 * 113.79123 * 205.54361 * 13 12 11 39 39 H 1.08999 * 113.79675 * 337.02248 * 13 12 11 40 40 H 0.97000 * 120.00716 * 180.02562 * 18 17 15 41 41 H 1.09001 * 113.78761 * 221.43964 * 23 14 13 42 42 H 1.08993 * 113.89963 * 89.98147 * 23 14 13 43 43 H 1.08998 * 109.74722 * 251.23738 * 24 8 6 44 44 H 1.09002 * 109.74698 * 11.91255 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7998 2.6582 1.1820 6 6 4.7572 2.6854 2.3454 7 8 4.8213 1.7383 3.1003 8 7 5.5415 3.7626 2.5477 9 6 5.4864 4.9220 1.6436 10 6 6.9014 5.2509 1.1708 11 8 7.7557 5.4187 2.3065 12 6 7.8435 4.2664 3.1401 13 6 8.6725 3.1262 2.5335 14 7 9.8245 3.7326 3.2305 15 6 11.1800 3.7159 3.0366 16 1 11.8284 4.2589 3.7083 17 6 11.7207 3.0010 1.9767 18 7 10.9307 2.3388 1.1584 19 14 13.5696 2.9788 1.7117 20 1 14.1630 1.8404 2.4581 21 1 13.8604 2.8264 0.2634 22 1 14.1555 4.2519 2.2029 23 6 8.9291 4.3645 4.2202 24 6 6.4853 3.8142 3.6779 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 3.7401 0.5064 1.0920 31 1 2.4774 1.2353 2.1130 32 1 4.3576 2.7561 0.2506 33 1 3.0947 3.4844 1.2718 34 1 4.8607 4.6852 0.7831 35 1 5.0730 5.7798 2.1740 36 1 6.8866 6.1716 0.5875 37 1 7.2746 4.4346 0.5524 38 1 8.4022 2.1388 2.9078 39 1 8.7456 3.1656 1.4467 40 1 11.3085 1.8390 0.4179 41 1 9.2061 5.3878 4.4735 42 1 8.7340 3.7470 5.0969 43 1 6.1288 4.5252 4.4232 44 1 6.5768 2.8251 4.1268 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755050620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = -24.948535 kcal Electronic energy + Delta-G solvation = -24261.815586 eV Core-core repulsion = 20794.840386 eV Total energy + Delta-G solvation = -3466.975200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73450 -40.19291 -37.78503 -36.86536 -35.71809 -34.32780 -33.33788 -31.49171 -29.55140 -28.72160 -27.00950 -26.84580 -24.63958 -23.78670 -22.66030 -20.81323 -20.51297 -19.86482 -18.84608 -18.20063 -17.56424 -17.09009 -17.07167 -16.50314 -16.19594 -15.94568 -15.74301 -15.29439 -14.98280 -14.88787 -14.71998 -14.34001 -14.14868 -13.98972 -13.40185 -13.27505 -13.04967 -12.94125 -12.78092 -12.56463 -12.51959 -12.40113 -12.05839 -11.95715 -11.74646 -11.71385 -11.60604 -11.44444 -10.99017 -10.81018 -10.74110 -10.16554 -9.52004 -8.97204 -7.93147 -5.27876 1.42251 1.43799 1.45367 1.53993 1.62044 1.92934 2.43932 2.65508 3.24037 3.32528 3.50838 3.62998 3.79750 3.86315 4.01395 4.08499 4.18399 4.30332 4.35816 4.38586 4.46279 4.61337 4.62778 4.66128 4.68496 4.69529 4.74830 4.80937 4.91058 4.95141 4.97241 5.09825 5.10450 5.21477 5.24496 5.33747 5.42323 5.45222 5.80938 5.86272 5.93394 6.33413 6.40184 6.86204 7.15364 7.55933 8.49251 9.23479 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003481 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.684425 B = 8042.563236 C = 8672.296568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C -0.087 4.087 4 C -0.097 4.097 5 C -0.130 4.130 6 C 0.506 3.494 7 O -0.590 6.590 8 N -0.616 5.616 9 C 0.079 3.921 10 C 0.036 3.964 11 O -0.363 6.363 12 C 0.080 3.920 13 C 0.152 3.848 14 N -0.635 5.635 15 C -0.233 4.233 16 H 0.087 0.913 17 C -0.071 4.071 18 N -0.956 5.956 19 Si 0.984 3.016 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.133 3.867 24 C 0.107 3.893 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.031 0.969 38 H 0.006 0.994 39 H 0.041 0.959 40 H 0.247 0.753 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 5.376 -3.064 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.188 4.188 3 C -0.124 4.124 4 C -0.135 4.135 5 C -0.169 4.169 6 C 0.296 3.704 7 O -0.470 6.470 8 N -0.349 5.349 9 C -0.043 4.043 10 C -0.040 4.040 11 O -0.281 6.281 12 C 0.038 3.962 13 C 0.026 3.974 14 N -0.362 5.362 15 C -0.361 4.361 16 H 0.105 0.895 17 C -0.263 4.263 18 N -0.605 5.605 19 Si 0.811 3.189 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.190 1.190 23 C 0.008 3.992 24 C -0.017 4.017 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.747 5.004 -2.781 21.522 hybrid contribution 1.400 -1.001 -0.161 1.729 sum -19.347 4.004 -2.942 19.974 Atomic orbital electron populations 1.24012 0.95728 1.02626 1.00808 1.23086 0.96557 0.98886 1.00243 1.20750 0.97899 0.95731 0.98044 1.21226 0.97500 0.95876 0.98891 1.21788 0.97710 1.01463 0.95988 1.21593 0.81157 0.80617 0.86990 1.90674 1.70014 1.36524 1.49803 1.48360 1.39160 1.18413 1.29013 1.22574 0.97705 0.88543 0.95439 1.23130 0.89455 1.03430 0.88024 1.87884 1.68163 1.34065 1.38008 1.23150 0.92802 0.87296 0.92936 1.22504 0.85028 0.92646 0.97191 1.46204 1.01503 1.57554 1.30920 1.19447 0.81598 1.25530 1.09557 0.89545 1.25697 1.02718 0.99968 0.97950 1.70032 1.34965 1.37072 1.18464 0.85003 0.79165 0.78141 0.76569 1.21360 1.21918 1.18997 1.22720 0.86523 0.98032 0.91967 1.21969 0.87516 1.02738 0.89503 0.87467 0.88110 0.88154 0.89602 0.89950 0.93605 0.92570 0.86911 0.85219 0.85097 0.87922 0.84731 0.95041 0.97579 0.94062 0.94376 0.91471 0.91339 0.88505 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.17 -2.72 9.52 25.64 0.24 -2.48 16 3 C -0.09 -1.23 5.66 29.85 0.17 -1.06 16 4 C -0.10 -1.92 4.49 30.60 0.14 -1.78 16 5 C -0.13 -2.28 4.07 29.85 0.12 -2.16 16 6 C 0.51 14.47 7.71 87.66 0.68 15.15 16 7 O -0.59 -22.58 15.48 -3.04 -0.05 -22.63 16 8 N -0.62 -16.86 3.03 -818.67 -2.48 -19.34 16 9 C 0.08 1.50 6.47 86.18 0.56 2.05 16 10 C 0.04 0.98 6.87 71.91 0.49 1.48 16 11 O -0.36 -13.49 10.52 -148.98 -1.57 -15.06 16 12 C 0.08 3.15 1.21 -10.48 -0.01 3.13 16 13 C 0.15 7.82 6.65 86.31 0.57 8.40 16 14 N -0.64 -34.68 3.70 -729.23 -2.70 -37.38 16 15 C -0.23 -13.72 10.70 84.03 0.90 -12.82 16 16 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 17 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 18 N -0.96 -60.25 11.39 21.65 0.25 -60.01 16 19 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.13 5.60 8.34 86.30 0.72 6.32 16 24 C 0.11 3.46 5.79 86.19 0.50 3.96 16 25 H 0.11 1.19 7.84 -2.91 -0.02 1.17 16 26 H 0.10 1.23 8.06 -2.91 -0.02 1.21 16 27 H 0.10 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.09 0.90 7.79 -2.39 -0.02 0.88 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.11 1.62 7.68 -2.39 -0.02 1.60 16 33 H 0.13 1.33 8.00 -2.39 -0.02 1.31 16 34 H 0.13 1.45 6.03 -2.39 -0.01 1.43 16 35 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.13 2.68 8.14 -2.38 -0.02 2.67 16 37 H 0.03 1.03 7.19 -2.39 -0.02 1.01 16 38 H 0.01 0.36 7.94 -2.39 -0.02 0.34 16 39 H 0.04 2.37 6.31 -2.39 -0.02 2.36 16 40 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 43 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.08 2.92 6.91 -2.39 -0.02 2.90 16 Total: -1.00 -80.37 355.22 2.96 -77.42 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.96 Total: 12.92 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.52 Total: 14.72 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.94 Total: -116.73 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.61 Total: -37.69 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -80.37 2.96 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755050620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.467 kcal (2) G-P(sol) polarization free energy of solvation -80.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds