Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46974 * 2 1 4 4 C 1.32994 * 120.00211 * 125.43349 * 3 2 1 5 5 C 1.50697 * 120.00420 * 185.76039 * 4 3 2 6 6 C 1.47106 * 119.99614 * 5.75350 * 4 3 2 7 7 O 1.21620 * 119.99864 * 255.55393 * 6 4 3 8 8 N 1.34775 * 120.00003 * 75.56453 * 6 4 3 9 9 C 1.46500 * 119.99993 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.93142 * 328.63588 * 9 8 6 11 11 C 1.55046 * 110.87895 * 92.29065 * 9 8 6 12 12 O 1.44562 * 103.64114 * 154.75817 * 11 9 8 13 13 C 1.42972 * 106.77378 * 320.75810 * 12 11 9 14 14 C 1.53210 * 115.36940 * 156.23842 * 13 12 11 15 15 N 1.47721 * 85.89775 * 93.48051 * 14 13 12 16 16 C 1.36945 * 134.42799 * 204.09584 * 15 14 13 17 17 H 1.08006 * 119.99638 * 174.53309 * 16 15 14 18 18 C 1.38810 * 120.00309 * 354.53347 * 16 15 14 19 19 N 1.31620 * 120.00019 * 5.02434 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 185.02688 * 18 16 15 21 21 H 1.48493 * 109.47119 * 94.99554 * 20 18 16 22 22 H 1.48496 * 109.46935 * 214.99605 * 20 18 16 23 23 H 1.48497 * 109.46951 * 334.99448 * 20 18 16 24 24 C 1.47710 * 91.13753 * 24.11783 * 15 14 13 25 25 C 1.53436 * 108.16889 * 25.82024 * 13 12 11 26 26 H 1.09003 * 109.47075 * 60.00638 * 1 2 3 27 27 H 1.09007 * 109.46950 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47365 * 299.99875 * 1 2 3 29 29 H 1.08997 * 109.47268 * 239.99625 * 2 1 3 30 30 H 1.08999 * 109.46888 * 120.00099 * 2 1 3 31 31 H 1.07999 * 120.00159 * 305.42587 * 3 2 1 32 32 H 1.09001 * 109.46911 * 269.99963 * 5 4 3 33 33 H 1.09001 * 109.46740 * 29.98913 * 5 4 3 34 34 H 1.08994 * 109.47671 * 149.99651 * 5 4 3 35 35 H 0.97000 * 120.00314 * 359.97438 * 8 6 4 36 36 H 1.09001 * 110.59009 * 36.21660 * 11 9 8 37 37 H 1.08999 * 110.59017 * 273.30019 * 11 9 8 38 38 H 1.09004 * 113.80387 * 207.72384 * 14 13 12 39 39 H 1.09003 * 113.80339 * 339.23562 * 14 13 12 40 40 H 0.96993 * 119.99960 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.81069 * 221.64086 * 24 15 14 42 42 H 1.09004 * 113.80162 * 90.12627 * 24 15 14 43 43 H 1.09010 * 110.54921 * 116.91279 * 25 13 12 44 44 H 1.08999 * 110.55548 * 239.73036 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8835 1.8253 0.9384 5 6 3.2850 3.2756 1.0171 6 6 3.4328 0.8567 1.8998 7 8 3.0163 0.8308 3.0421 8 7 4.3979 -0.0016 1.5147 9 6 4.9446 -0.9665 2.4719 10 1 4.9283 -0.5628 3.4842 11 6 4.1761 -2.3113 2.4010 12 8 5.1376 -3.2790 2.8794 13 6 6.4069 -2.9003 2.3412 14 6 7.6265 -3.3965 3.1246 15 7 7.6185 -4.5489 2.2005 16 6 8.0847 -5.8348 2.2676 17 1 7.8727 -6.5285 1.4674 18 6 8.8297 -6.2467 3.3641 19 7 9.0045 -5.4333 4.3840 20 14 9.5840 -7.9554 3.3921 21 1 10.9875 -7.8848 2.9121 22 1 9.5615 -8.4837 4.7798 23 1 8.8027 -8.8560 2.5069 24 6 6.9071 -3.7591 1.1748 25 6 6.3802 -1.3904 2.0697 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7011 2.1107 -0.7621 32 1 4.1689 3.4417 0.4012 33 1 2.4676 3.8990 0.6549 34 1 3.5091 3.5350 2.0517 35 1 4.7300 0.0189 0.6035 36 1 3.8868 -2.5337 1.3739 37 1 3.3009 -2.2873 3.0502 38 1 8.5039 -2.7577 3.0236 39 1 7.4071 -3.6607 4.1592 40 1 9.5248 -5.7212 5.1503 41 1 6.1176 -4.3104 0.6642 42 1 7.5692 -3.2288 0.4904 43 1 7.1178 -0.8775 2.6871 44 1 6.5570 -1.1884 1.0133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755057651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = -12.059346 kcal Electronic energy + Delta-G solvation = -24022.245487 eV Core-core repulsion = 20555.829205 eV Total energy + Delta-G solvation = -3466.416283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45708 -39.38539 -36.30859 -35.91950 -34.42922 -32.53898 -32.06679 -30.35096 -28.12458 -27.28892 -25.68519 -24.95295 -23.92785 -22.51026 -21.83851 -20.96430 -19.45756 -19.03629 -16.79731 -16.62815 -16.41703 -15.76370 -15.34964 -15.07883 -14.71221 -14.46313 -14.34579 -13.97716 -13.57776 -13.46138 -13.18702 -13.15403 -13.07555 -12.90530 -12.62986 -12.30599 -11.95276 -11.74770 -11.54188 -11.38318 -11.30101 -11.21321 -11.06482 -10.81665 -10.43463 -10.25383 -10.03779 -9.73498 -9.56011 -9.25452 -9.14791 -8.83951 -8.76994 -6.84121 -5.73240 -3.04278 1.42364 2.48218 3.05345 3.42537 3.47116 3.49861 4.26631 4.34391 4.48014 4.52928 4.69202 4.79162 4.97814 4.98974 5.02567 5.08188 5.14020 5.23119 5.27934 5.31932 5.39745 5.41418 5.52541 5.63253 5.65243 5.77251 5.80859 5.86447 5.88815 5.95901 6.08193 6.12428 6.24563 6.30541 6.35663 6.56009 6.64561 6.92429 7.23153 7.33292 7.52869 7.73241 8.02107 8.05253 9.08141 9.74647 10.62502 11.44694 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.003085 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.759797 B = 9074.273681 C = 9424.444606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.111 4.111 4 C -0.167 4.167 5 C -0.104 4.104 6 C 0.558 3.442 7 O -0.535 6.535 8 N -0.712 5.712 9 C 0.109 3.891 10 H 0.107 0.893 11 C 0.037 3.963 12 O -0.330 6.330 13 C 0.057 3.943 14 C 0.174 3.826 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.105 3.895 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 17.181 -11.038 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.130 4.130 4 C -0.170 4.170 5 C -0.161 4.161 6 C 0.344 3.656 7 O -0.412 6.412 8 N -0.364 5.364 9 C 0.004 3.996 10 H 0.125 0.875 11 C -0.042 4.042 12 O -0.247 6.247 13 C 0.016 3.984 14 C 0.048 3.952 15 N -0.330 5.330 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.021 4.021 25 C -0.184 4.184 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.068 16.661 -9.893 23.371 hybrid contribution 0.732 -0.700 -0.627 1.192 sum -12.336 15.960 -10.520 22.750 Atomic orbital electron populations 1.21670 0.94376 1.02168 1.02038 1.20803 0.96920 0.93832 1.03044 1.23398 0.95843 0.97863 0.95927 1.21547 1.01806 0.96560 0.97117 1.20666 1.01883 0.90426 1.03174 1.18507 0.79057 0.80246 0.87766 1.90838 1.59357 1.71162 1.19848 1.46050 1.39576 1.35832 1.14914 1.22712 0.93278 0.89059 0.94527 0.87523 1.23895 0.93472 0.87123 0.99697 1.88955 1.16253 1.48796 1.70704 1.23818 0.87117 0.89627 0.97840 1.22326 0.89326 0.86444 0.97089 1.45762 1.67729 1.07266 1.12272 1.18991 1.26482 0.84975 1.04415 0.90229 1.24797 1.00475 0.98388 0.96734 1.69824 1.44129 1.35605 1.07076 0.86109 0.79229 0.83563 0.76957 1.21683 1.21681 1.20580 1.23011 0.94342 0.92256 0.92503 1.23063 0.95583 0.97312 1.02436 0.92493 0.92149 0.92442 0.90341 0.91178 0.85700 0.91004 0.91061 0.91164 0.76297 0.92456 0.89130 0.94057 0.90316 0.93628 0.93492 0.94143 0.89433 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.11 -0.87 6.18 -27.89 -0.17 -1.04 16 3 C -0.11 -0.83 9.20 -36.13 -0.33 -1.17 16 4 C -0.17 -1.52 5.74 -102.85 -0.59 -2.11 16 5 C -0.10 -0.75 10.03 36.00 0.36 -0.39 16 6 C 0.56 6.80 5.26 -12.66 -0.07 6.73 16 7 O -0.54 -8.84 16.75 5.26 0.09 -8.75 16 8 N -0.71 -7.66 5.14 -52.92 -0.27 -7.93 16 9 C 0.11 1.48 3.51 -65.79 -0.23 1.25 16 10 H 0.11 1.62 7.55 -51.93 -0.39 1.23 16 11 C 0.04 0.56 7.42 38.24 0.28 0.84 16 12 O -0.33 -6.72 11.29 -35.23 -0.40 -7.11 16 13 C 0.06 1.10 1.53 -90.28 -0.14 0.97 16 14 C 0.17 4.17 6.83 -3.27 -0.02 4.15 16 15 N -0.60 -15.99 3.70 -181.60 -0.67 -16.66 16 16 C -0.22 -6.40 10.69 -15.06 -0.16 -6.56 16 17 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.91 11.49 55.49 0.64 -27.27 16 20 Si 0.91 22.61 29.56 -169.99 -5.02 17.59 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.11 2.18 8.34 -3.26 -0.03 2.15 16 25 C -0.14 -2.03 6.22 -25.45 -0.16 -2.19 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.07 0.59 8.11 -51.93 -0.42 0.16 16 35 H 0.40 3.30 8.39 -40.82 -0.34 2.96 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.04 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.08 2.15 7.33 -51.93 -0.38 1.77 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.76 8.07 -51.93 -0.42 0.35 16 43 H 0.09 1.20 7.93 -51.92 -0.41 0.79 16 44 H 0.08 0.92 7.52 -51.93 -0.39 0.53 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -34.79 362.33 -8.44 -43.23 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.28 Total: -0.18 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.98 Total: 1.63 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.31 Total: -51.86 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.31 Total: -15.86 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.79 -8.44 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755057651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.168 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds