Wall clock time and date at job start Tue Mar 31 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46974 * 2 1 4 4 C 1.32994 * 120.00211 * 125.43349 * 3 2 1 5 5 C 1.50697 * 120.00420 * 185.76039 * 4 3 2 6 6 C 1.47106 * 119.99614 * 5.75350 * 4 3 2 7 7 O 1.21620 * 119.99864 * 255.55393 * 6 4 3 8 8 N 1.34775 * 120.00003 * 75.56453 * 6 4 3 9 9 C 1.46500 * 119.99993 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.93142 * 328.63588 * 9 8 6 11 11 C 1.55046 * 110.87895 * 92.29065 * 9 8 6 12 12 O 1.44562 * 103.64114 * 154.75817 * 11 9 8 13 13 C 1.42972 * 106.77378 * 320.75810 * 12 11 9 14 14 C 1.53210 * 115.36940 * 156.23842 * 13 12 11 15 15 N 1.47721 * 85.89775 * 93.48051 * 14 13 12 16 16 C 1.36945 * 134.42799 * 204.09584 * 15 14 13 17 17 H 1.08006 * 119.99638 * 174.53309 * 16 15 14 18 18 C 1.38810 * 120.00309 * 354.53347 * 16 15 14 19 19 N 1.31620 * 120.00019 * 5.02434 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 185.02688 * 18 16 15 21 21 H 1.48493 * 109.47119 * 94.99554 * 20 18 16 22 22 H 1.48496 * 109.46935 * 214.99605 * 20 18 16 23 23 H 1.48497 * 109.46951 * 334.99448 * 20 18 16 24 24 C 1.47710 * 91.13753 * 24.11783 * 15 14 13 25 25 C 1.53436 * 108.16889 * 25.82024 * 13 12 11 26 26 H 1.09003 * 109.47075 * 60.00638 * 1 2 3 27 27 H 1.09007 * 109.46950 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47365 * 299.99875 * 1 2 3 29 29 H 1.08997 * 109.47268 * 239.99625 * 2 1 3 30 30 H 1.08999 * 109.46888 * 120.00099 * 2 1 3 31 31 H 1.07999 * 120.00159 * 305.42587 * 3 2 1 32 32 H 1.09001 * 109.46911 * 269.99963 * 5 4 3 33 33 H 1.09001 * 109.46740 * 29.98913 * 5 4 3 34 34 H 1.08994 * 109.47671 * 149.99651 * 5 4 3 35 35 H 0.97000 * 120.00314 * 359.97438 * 8 6 4 36 36 H 1.09001 * 110.59009 * 36.21660 * 11 9 8 37 37 H 1.08999 * 110.59017 * 273.30019 * 11 9 8 38 38 H 1.09004 * 113.80387 * 207.72384 * 14 13 12 39 39 H 1.09003 * 113.80339 * 339.23562 * 14 13 12 40 40 H 0.96993 * 119.99960 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.81069 * 221.64086 * 24 15 14 42 42 H 1.09004 * 113.80162 * 90.12627 * 24 15 14 43 43 H 1.09010 * 110.54921 * 116.91279 * 25 13 12 44 44 H 1.08999 * 110.55548 * 239.73036 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8835 1.8253 0.9384 5 6 3.2850 3.2756 1.0171 6 6 3.4328 0.8567 1.8998 7 8 3.0163 0.8308 3.0421 8 7 4.3979 -0.0016 1.5147 9 6 4.9446 -0.9665 2.4719 10 1 4.9283 -0.5628 3.4842 11 6 4.1761 -2.3113 2.4010 12 8 5.1376 -3.2790 2.8794 13 6 6.4069 -2.9003 2.3412 14 6 7.6265 -3.3965 3.1246 15 7 7.6185 -4.5489 2.2005 16 6 8.0847 -5.8348 2.2676 17 1 7.8727 -6.5285 1.4674 18 6 8.8297 -6.2467 3.3641 19 7 9.0045 -5.4333 4.3840 20 14 9.5840 -7.9554 3.3921 21 1 10.9875 -7.8848 2.9121 22 1 9.5615 -8.4837 4.7798 23 1 8.8027 -8.8560 2.5069 24 6 6.9071 -3.7591 1.1748 25 6 6.3802 -1.3904 2.0697 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7011 2.1107 -0.7621 32 1 4.1689 3.4417 0.4012 33 1 2.4676 3.8990 0.6549 34 1 3.5091 3.5350 2.0517 35 1 4.7300 0.0189 0.6035 36 1 3.8868 -2.5337 1.3739 37 1 3.3009 -2.2873 3.0502 38 1 8.5039 -2.7577 3.0236 39 1 7.4071 -3.6607 4.1592 40 1 9.5248 -5.7212 5.1503 41 1 6.1176 -4.3104 0.6642 42 1 7.5692 -3.2288 0.4904 43 1 7.1178 -0.8775 2.6871 44 1 6.5570 -1.1884 1.0133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755057651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:28 Heat of formation + Delta-G solvation = -36.815642 kcal Electronic energy + Delta-G solvation = -24023.319001 eV Core-core repulsion = 20555.829205 eV Total energy + Delta-G solvation = -3467.489796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68634 -40.63738 -37.83059 -36.73861 -35.64104 -34.14662 -33.15550 -31.61788 -29.81802 -27.85806 -27.36493 -26.73125 -24.86189 -23.78394 -23.00862 -22.11074 -20.64402 -20.35069 -18.74143 -17.77284 -17.32903 -17.10129 -16.58949 -16.45991 -16.22243 -15.79474 -15.39641 -15.24808 -14.88089 -14.66810 -14.48239 -14.21975 -13.89533 -13.75282 -13.58301 -13.34338 -13.27920 -13.04106 -12.91187 -12.82704 -12.82064 -12.61094 -12.21750 -11.99947 -11.88589 -11.74146 -11.62558 -11.45618 -10.96924 -10.92581 -10.53033 -10.11676 -9.86232 -8.92110 -7.91669 -5.23797 0.78934 1.43767 1.46421 1.55335 1.55962 2.11593 2.46999 2.88886 3.25121 3.36697 3.48302 3.66532 3.69334 3.72464 3.91505 4.08493 4.14910 4.18637 4.41246 4.53583 4.57569 4.59352 4.63137 4.72254 4.78541 4.81670 4.84379 4.87617 4.91364 5.00121 5.01440 5.10280 5.13647 5.21746 5.22091 5.30645 5.39280 5.47872 5.50284 5.67061 5.91773 6.17770 6.46809 6.90547 7.15829 7.59931 8.55144 9.26217 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.003085 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.759797 B = 9074.273681 C = 9424.444606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.090 4.090 4 C -0.187 4.187 5 C -0.101 4.101 6 C 0.558 3.442 7 O -0.587 6.587 8 N -0.695 5.695 9 C 0.122 3.878 10 H 0.086 0.914 11 C 0.037 3.963 12 O -0.370 6.370 13 C 0.076 3.924 14 C 0.166 3.834 15 N -0.640 5.640 16 C -0.234 4.234 17 H 0.083 0.917 18 C -0.070 4.070 19 N -0.954 5.954 20 Si 0.980 3.020 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.109 3.891 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.419 0.581 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.248 0.752 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 18.508 -14.304 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.109 4.109 4 C -0.190 4.190 5 C -0.158 4.158 6 C 0.347 3.653 7 O -0.467 6.467 8 N -0.348 5.348 9 C 0.016 3.984 10 H 0.104 0.896 11 C -0.041 4.041 12 O -0.288 6.288 13 C 0.035 3.965 14 C 0.040 3.960 15 N -0.367 5.367 16 C -0.363 4.363 17 H 0.101 0.899 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.808 3.192 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.016 4.016 25 C -0.168 4.168 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.174 0.826 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.257 0.743 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.776 18.011 -13.234 26.255 hybrid contribution 0.836 -1.121 0.355 1.443 sum -12.940 16.891 -12.879 24.872 Atomic orbital electron populations 1.21666 0.93882 1.02281 1.02365 1.20864 0.97386 0.94287 1.02556 1.23644 0.93888 0.97858 0.95462 1.21520 1.03475 0.96738 0.97293 1.20688 1.03362 0.89276 1.02457 1.19102 0.78410 0.80249 0.87577 1.90817 1.61015 1.72548 1.22313 1.45854 1.39056 1.34713 1.15155 1.22329 0.92902 0.88737 0.94393 0.89574 1.24050 0.92471 0.87006 1.00566 1.88910 1.17457 1.50829 1.71631 1.23412 0.85135 0.92722 0.95206 1.22280 0.92095 0.86576 0.95024 1.46162 1.68168 1.07333 1.14988 1.19409 1.25889 0.86703 1.04279 0.89894 1.25680 1.01559 1.02480 0.96561 1.70028 1.45158 1.37520 1.07588 0.85035 0.78449 0.79117 0.76611 1.21029 1.22264 1.19191 1.23228 0.94173 0.91716 0.92455 1.22953 0.95833 0.93072 1.04957 0.90489 0.92265 0.93746 0.88579 0.93838 0.82574 0.89317 0.89226 0.93066 0.74260 0.90243 0.89627 0.93751 0.94973 0.94293 0.93064 0.90856 0.88819 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.11 -1.52 6.18 29.85 0.18 -1.34 16 3 C -0.09 -1.04 9.20 24.52 0.23 -0.81 16 4 C -0.19 -2.96 5.74 -18.70 -0.11 -3.07 16 5 C -0.10 -1.19 10.03 71.23 0.71 -0.47 16 6 C 0.56 12.98 5.26 86.57 0.46 13.43 16 7 O -0.59 -19.63 16.75 -4.09 -0.07 -19.70 16 8 N -0.69 -13.47 5.14 -439.58 -2.26 -15.73 16 9 C 0.12 3.17 3.51 46.37 0.16 3.34 16 10 H 0.09 2.65 7.55 -2.39 -0.02 2.63 16 11 C 0.04 1.10 7.42 72.68 0.54 1.63 16 12 O -0.37 -15.22 11.29 -148.98 -1.68 -16.90 16 13 C 0.08 2.89 1.53 -10.46 -0.02 2.88 16 14 C 0.17 8.20 6.83 86.21 0.59 8.78 16 15 N -0.64 -34.19 3.70 -733.89 -2.72 -36.90 16 16 C -0.23 -13.74 10.69 84.03 0.90 -12.85 16 17 H 0.08 4.64 7.83 -2.91 -0.02 4.61 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 19 N -0.95 -60.04 11.49 21.65 0.25 -59.79 16 20 Si 0.98 47.31 29.56 68.60 2.03 49.34 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.11 4.33 8.34 86.22 0.72 5.05 16 25 C -0.13 -3.34 6.22 31.42 0.20 -3.14 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.83 6.32 -2.39 -0.02 0.81 16 31 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.71 8.07 -2.39 -0.02 0.70 16 34 H 0.05 0.80 8.11 -2.39 -0.02 0.78 16 35 H 0.42 5.34 8.39 -92.71 -0.78 4.56 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.04 2.13 8.10 -2.38 -0.02 2.11 16 39 H 0.03 1.86 7.33 -2.39 -0.02 1.84 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 2.49 8.07 -2.38 -0.02 2.47 16 43 H 0.09 2.38 7.93 -2.38 -0.02 2.36 16 44 H 0.12 2.18 7.52 -2.39 -0.02 2.16 16 Total: -1.00 -79.83 362.33 1.49 -78.33 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.21 Total: 12.68 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.74 Total: 8.67 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.73 Total: -112.42 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.75 Total: -36.60 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -79.83 1.49 -78.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755057651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.518 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds