Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47294 * 2 1 4 4 C 1.32997 * 119.99996 * 125.42858 * 3 2 1 5 5 C 1.50699 * 119.99797 * 185.66309 * 4 3 2 6 6 C 1.47102 * 119.99981 * 5.66625 * 4 3 2 7 7 O 1.21610 * 119.99871 * 255.47359 * 6 4 3 8 8 N 1.34775 * 119.99930 * 75.46941 * 6 4 3 9 9 C 1.46496 * 120.00279 * 179.97438 * 8 6 4 10 10 H 1.09005 * 110.41826 * 36.05898 * 9 8 6 11 11 C 1.54174 * 110.47551 * 273.55727 * 9 8 6 12 12 O 1.44000 * 107.54248 * 242.86395 * 11 9 8 13 13 C 1.43166 * 106.80510 * 335.37197 * 12 11 9 14 14 C 1.52703 * 116.34764 * 167.52485 * 13 12 11 15 15 N 1.47812 * 85.73176 * 95.23355 * 14 13 12 16 16 C 1.36940 * 134.39154 * 203.77231 * 15 14 13 17 17 H 1.08002 * 120.00042 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99763 * 359.97062 * 16 15 14 19 19 N 1.31628 * 119.99923 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47247 * 89.99927 * 20 18 16 22 22 H 1.48499 * 109.47141 * 209.99895 * 20 18 16 23 23 H 1.48497 * 109.46945 * 330.00026 * 20 18 16 24 24 C 1.47819 * 91.22590 * 23.74763 * 15 14 13 25 25 C 1.53813 * 105.32304 * 37.96828 * 13 12 11 26 26 H 1.08998 * 109.47131 * 60.00017 * 1 2 3 27 27 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47233 * 300.00268 * 1 2 3 29 29 H 1.08998 * 109.47233 * 239.99732 * 2 1 3 30 30 H 1.08998 * 109.47131 * 119.99983 * 2 1 3 31 31 H 1.08004 * 119.99726 * 305.43384 * 3 2 1 32 32 H 1.08999 * 109.47180 * 269.99843 * 5 4 3 33 33 H 1.09003 * 109.47074 * 30.00666 * 5 4 3 34 34 H 1.08998 * 109.47126 * 150.00066 * 5 4 3 35 35 H 0.97000 * 120.00205 * 0.02562 * 8 6 4 36 36 H 1.08992 * 109.85346 * 2.38502 * 11 9 8 37 37 H 1.08993 * 109.85589 * 123.33270 * 11 9 8 38 38 H 1.09004 * 113.83653 * 209.43805 * 14 13 12 39 39 H 1.09003 * 113.83236 * 341.03034 * 14 13 12 40 40 H 0.97003 * 119.99475 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.83792 * 222.05035 * 24 15 14 42 42 H 1.09004 * 113.94262 * 90.46248 * 24 15 14 43 43 H 1.09004 * 110.94382 * 206.55286 * 25 13 12 44 44 H 1.08997 * 110.94230 * 82.84620 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8835 1.8251 0.9385 5 6 3.2869 3.2751 1.0157 6 6 3.4313 0.8570 1.9011 7 8 3.0152 0.8337 3.0436 8 7 4.3943 -0.0041 1.5169 9 6 4.9402 -0.9678 2.4756 10 1 4.1578 -1.3209 3.1474 11 6 6.0948 -0.3354 3.2780 12 8 7.2907 -1.0793 2.9776 13 6 6.8731 -2.3850 2.5649 14 6 7.9394 -3.2634 1.9144 15 7 8.1372 -3.8319 3.2644 16 6 9.1740 -4.4678 3.8936 17 1 9.0649 -4.7964 4.9166 18 6 10.3652 -4.6901 3.2165 19 7 10.4979 -4.2901 1.9696 20 14 11.7793 -5.5582 4.0745 21 1 11.6687 -7.0224 3.8532 22 1 13.0682 -5.0700 3.5218 23 1 11.7252 -5.2722 5.5307 24 6 6.7694 -3.4396 3.6646 25 6 5.5977 -2.1606 1.7351 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7011 2.1106 -0.7621 32 1 4.1713 3.4395 0.4002 33 1 2.4702 3.8992 0.6527 34 1 3.5107 3.5354 2.0502 35 1 4.7264 0.0148 0.6057 36 1 6.2232 0.7062 2.9836 37 1 5.8802 -0.3946 4.3449 38 1 7.5423 -3.9752 1.1906 39 1 8.7994 -2.7080 1.5401 40 1 11.3305 -4.4451 1.4966 41 1 6.7070 -3.0230 4.6699 42 1 6.0160 -4.2035 3.4725 43 1 4.9541 -3.0398 1.7642 44 1 5.8436 -1.8932 0.7074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755057653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = -11.307165 kcal Electronic energy + Delta-G solvation = -23990.121735 eV Core-core repulsion = 20523.738069 eV Total energy + Delta-G solvation = -3466.383666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49540 -39.39746 -36.32260 -35.89752 -34.38034 -32.53661 -32.06865 -30.34792 -28.19605 -27.26746 -25.85810 -24.91895 -23.92018 -22.45615 -21.85236 -20.96160 -19.39874 -18.96912 -16.77302 -16.73191 -16.29679 -15.78886 -15.38527 -15.06222 -14.92179 -14.58969 -14.25305 -13.86337 -13.67518 -13.47388 -13.30305 -13.13132 -13.03743 -12.67516 -12.56191 -12.30677 -11.88985 -11.64197 -11.61018 -11.39250 -11.30648 -11.19444 -11.10747 -10.80574 -10.66613 -10.16882 -9.96807 -9.68224 -9.57470 -9.24121 -9.23335 -8.86515 -8.75297 -6.86107 -5.73173 -3.04684 1.44019 2.49374 3.10446 3.42385 3.47063 3.49413 4.22961 4.35776 4.48116 4.50968 4.67464 4.77220 4.97729 5.03792 5.06883 5.10047 5.14009 5.22986 5.31118 5.36939 5.39174 5.42306 5.52962 5.60507 5.64349 5.76409 5.79396 5.85483 5.91637 5.98998 6.05007 6.08353 6.26804 6.33603 6.43531 6.54490 6.63270 6.93221 7.20180 7.35531 7.51082 7.72592 8.01226 8.06370 9.07619 9.74106 10.60482 11.44499 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.003024 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.790522 B = 9257.443945 C = 9484.046548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.113 4.113 4 C -0.166 4.166 5 C -0.105 4.105 6 C 0.557 3.443 7 O -0.538 6.538 8 N -0.713 5.713 9 C 0.112 3.888 10 H 0.100 0.900 11 C 0.038 3.962 12 O -0.334 6.334 13 C 0.061 3.939 14 C 0.177 3.823 15 N -0.604 5.604 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.103 3.897 25 C -0.144 4.144 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 11.892 -7.373 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.132 4.132 4 C -0.169 4.169 5 C -0.162 4.162 6 C 0.344 3.656 7 O -0.415 6.415 8 N -0.364 5.364 9 C 0.007 3.993 10 H 0.118 0.882 11 C -0.041 4.041 12 O -0.252 6.252 13 C 0.019 3.981 14 C 0.052 3.948 15 N -0.331 5.331 16 C -0.348 4.348 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.023 4.023 25 C -0.183 4.183 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.044 11.805 -6.471 22.512 hybrid contribution 0.692 -0.553 -0.033 0.886 sum -17.352 11.252 -6.504 21.680 Atomic orbital electron populations 1.21670 0.94445 1.02069 1.02057 1.20788 0.96824 0.93882 1.02993 1.23387 0.96008 0.97834 0.95975 1.21561 1.01656 0.96599 0.97070 1.20676 1.01926 0.90403 1.03226 1.18506 0.78923 0.80417 0.87780 1.90824 1.59983 1.70806 1.19860 1.46213 1.39389 1.35831 1.15001 1.22477 0.96545 0.88718 0.91530 0.88153 1.23574 0.85101 0.96429 0.98948 1.88860 1.26478 1.22783 1.87112 1.23795 0.93807 0.84784 0.95670 1.22140 0.93800 0.90204 0.88645 1.45851 1.08272 1.68786 1.10153 1.19003 0.90181 1.29881 0.95688 0.90218 1.24767 0.97893 1.01504 0.96289 1.69808 1.25917 1.51349 1.09869 0.86102 0.81878 0.79086 0.78601 1.21664 1.21617 1.20631 1.22922 0.89109 0.93345 0.96970 1.23196 0.97723 0.97235 1.00193 0.92482 0.92231 0.92464 0.90351 0.91232 0.85706 0.90908 0.91054 0.91156 0.76176 0.90263 0.91961 0.94016 0.90011 0.93661 0.93312 0.93937 0.89377 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.65 16 2 C -0.11 -0.84 6.18 -27.88 -0.17 -1.02 16 3 C -0.11 -0.87 9.20 -36.13 -0.33 -1.20 16 4 C -0.17 -1.56 5.74 -102.85 -0.59 -2.16 16 5 C -0.11 -0.81 10.03 36.01 0.36 -0.45 16 6 C 0.56 6.91 5.26 -12.67 -0.07 6.84 16 7 O -0.54 -8.82 16.81 5.27 0.09 -8.73 16 8 N -0.71 -7.99 5.00 -53.36 -0.27 -8.26 16 9 C 0.11 1.51 3.35 -66.25 -0.22 1.28 16 10 H 0.10 1.40 7.66 -51.93 -0.40 1.01 16 11 C 0.04 0.60 7.51 37.77 0.28 0.89 16 12 O -0.33 -6.78 11.35 -35.23 -0.40 -7.18 16 13 C 0.06 1.17 1.28 -90.68 -0.12 1.05 16 14 C 0.18 4.20 7.05 -3.48 -0.02 4.18 16 15 N -0.60 -15.97 3.71 -184.65 -0.68 -16.65 16 16 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.73 11.40 55.49 0.63 -27.10 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.10 2.16 8.49 -3.47 -0.03 2.13 16 25 C -0.14 -2.01 6.21 -25.24 -0.16 -2.17 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 31 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.40 3.66 8.34 -40.82 -0.34 3.32 16 36 H 0.08 1.19 7.93 -51.93 -0.41 0.77 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 2.19 7.20 -51.93 -0.37 1.82 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 43 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 44 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -34.37 362.21 -8.42 -42.79 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.27 Total: 0.21 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.95 Total: 1.88 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.32 Total: -52.00 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.31 Total: -15.91 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.37 -8.42 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755057653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.485 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds