Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47294 * 2 1 4 4 C 1.32997 * 119.99996 * 125.42858 * 3 2 1 5 5 C 1.50699 * 119.99797 * 185.66309 * 4 3 2 6 6 C 1.47102 * 119.99981 * 5.66625 * 4 3 2 7 7 O 1.21610 * 119.99871 * 255.47359 * 6 4 3 8 8 N 1.34775 * 119.99930 * 75.46941 * 6 4 3 9 9 C 1.46496 * 120.00279 * 179.97438 * 8 6 4 10 10 H 1.09005 * 110.41826 * 36.05898 * 9 8 6 11 11 C 1.54174 * 110.47551 * 273.55727 * 9 8 6 12 12 O 1.44000 * 107.54248 * 242.86395 * 11 9 8 13 13 C 1.43166 * 106.80510 * 335.37197 * 12 11 9 14 14 C 1.52703 * 116.34764 * 167.52485 * 13 12 11 15 15 N 1.47812 * 85.73176 * 95.23355 * 14 13 12 16 16 C 1.36940 * 134.39154 * 203.77231 * 15 14 13 17 17 H 1.08002 * 120.00042 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99763 * 359.97062 * 16 15 14 19 19 N 1.31628 * 119.99923 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47247 * 89.99927 * 20 18 16 22 22 H 1.48499 * 109.47141 * 209.99895 * 20 18 16 23 23 H 1.48497 * 109.46945 * 330.00026 * 20 18 16 24 24 C 1.47819 * 91.22590 * 23.74763 * 15 14 13 25 25 C 1.53813 * 105.32304 * 37.96828 * 13 12 11 26 26 H 1.08998 * 109.47131 * 60.00017 * 1 2 3 27 27 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47233 * 300.00268 * 1 2 3 29 29 H 1.08998 * 109.47233 * 239.99732 * 2 1 3 30 30 H 1.08998 * 109.47131 * 119.99983 * 2 1 3 31 31 H 1.08004 * 119.99726 * 305.43384 * 3 2 1 32 32 H 1.08999 * 109.47180 * 269.99843 * 5 4 3 33 33 H 1.09003 * 109.47074 * 30.00666 * 5 4 3 34 34 H 1.08998 * 109.47126 * 150.00066 * 5 4 3 35 35 H 0.97000 * 120.00205 * 0.02562 * 8 6 4 36 36 H 1.08992 * 109.85346 * 2.38502 * 11 9 8 37 37 H 1.08993 * 109.85589 * 123.33270 * 11 9 8 38 38 H 1.09004 * 113.83653 * 209.43805 * 14 13 12 39 39 H 1.09003 * 113.83236 * 341.03034 * 14 13 12 40 40 H 0.97003 * 119.99475 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.83792 * 222.05035 * 24 15 14 42 42 H 1.09004 * 113.94262 * 90.46248 * 24 15 14 43 43 H 1.09004 * 110.94382 * 206.55286 * 25 13 12 44 44 H 1.08997 * 110.94230 * 82.84620 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8835 1.8251 0.9385 5 6 3.2869 3.2751 1.0157 6 6 3.4313 0.8570 1.9011 7 8 3.0152 0.8337 3.0436 8 7 4.3943 -0.0041 1.5169 9 6 4.9402 -0.9678 2.4756 10 1 4.1578 -1.3209 3.1474 11 6 6.0948 -0.3354 3.2780 12 8 7.2907 -1.0793 2.9776 13 6 6.8731 -2.3850 2.5649 14 6 7.9394 -3.2634 1.9144 15 7 8.1372 -3.8319 3.2644 16 6 9.1740 -4.4678 3.8936 17 1 9.0649 -4.7964 4.9166 18 6 10.3652 -4.6901 3.2165 19 7 10.4979 -4.2901 1.9696 20 14 11.7793 -5.5582 4.0745 21 1 11.6687 -7.0224 3.8532 22 1 13.0682 -5.0700 3.5218 23 1 11.7252 -5.2722 5.5307 24 6 6.7694 -3.4396 3.6646 25 6 5.5977 -2.1606 1.7351 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7011 2.1106 -0.7621 32 1 4.1713 3.4395 0.4002 33 1 2.4702 3.8992 0.6527 34 1 3.5107 3.5354 2.0502 35 1 4.7264 0.0148 0.6057 36 1 6.2232 0.7062 2.9836 37 1 5.8802 -0.3946 4.3449 38 1 7.5423 -3.9752 1.1906 39 1 8.7994 -2.7080 1.5401 40 1 11.3305 -4.4451 1.4966 41 1 6.7070 -3.0230 4.6699 42 1 6.0160 -4.2035 3.4725 43 1 4.9541 -3.0398 1.7642 44 1 5.8436 -1.8932 0.7074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755057653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -35.334361 kcal Electronic energy + Delta-G solvation = -23991.163632 eV Core-core repulsion = 20523.738069 eV Total energy + Delta-G solvation = -3467.425563 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74334 -40.64093 -37.83649 -36.72998 -35.59865 -34.14282 -33.15186 -31.62151 -29.86063 -27.87101 -27.55693 -26.68174 -24.87531 -23.76829 -22.99603 -22.09825 -20.62187 -20.23736 -18.75880 -17.80990 -17.36114 -16.89322 -16.66596 -16.64355 -16.33503 -15.91015 -15.32155 -15.19150 -14.97883 -14.65476 -14.46158 -14.22044 -13.91248 -13.71654 -13.37759 -13.34858 -13.21844 -12.99115 -12.90188 -12.85247 -12.78484 -12.66875 -12.29907 -11.99417 -11.88253 -11.87801 -11.64261 -11.35793 -10.95243 -10.93399 -10.58979 -10.11035 -9.87182 -8.93501 -7.91090 -5.23632 0.78811 1.44051 1.46805 1.55235 1.55811 2.17582 2.46519 2.81015 3.27332 3.35981 3.39411 3.67381 3.71323 3.85136 3.92872 4.05137 4.16083 4.17191 4.42224 4.52329 4.53652 4.59273 4.63279 4.71238 4.73309 4.79366 4.82362 4.87748 4.92413 4.96220 5.01581 5.10285 5.18505 5.21032 5.24273 5.31133 5.39356 5.48188 5.49914 5.66433 5.91474 6.15695 6.46311 6.91169 7.14277 7.59290 8.53295 9.26157 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.003024 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.790522 B = 9257.443945 C = 9484.046548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.090 4.090 4 C -0.190 4.190 5 C -0.102 4.102 6 C 0.559 3.441 7 O -0.584 6.584 8 N -0.701 5.701 9 C 0.126 3.874 10 H 0.099 0.901 11 C 0.036 3.964 12 O -0.369 6.369 13 C 0.077 3.923 14 C 0.174 3.826 15 N -0.640 5.640 16 C -0.237 4.237 17 H 0.080 0.920 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.980 3.020 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.102 3.898 25 C -0.127 4.127 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.416 0.584 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.249 0.751 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.130 12.323 -8.645 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.109 4.109 4 C -0.193 4.193 5 C -0.159 4.159 6 C 0.347 3.653 7 O -0.464 6.464 8 N -0.353 5.353 9 C 0.020 3.980 10 H 0.117 0.883 11 C -0.042 4.042 12 O -0.287 6.287 13 C 0.036 3.964 14 C 0.049 3.951 15 N -0.366 5.366 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.209 1.209 22 H -0.219 1.219 23 H -0.197 1.197 24 C -0.023 4.023 25 C -0.166 4.166 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.172 0.828 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.254 0.746 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.888 12.246 -7.760 24.612 hybrid contribution 1.192 -0.661 0.368 1.412 sum -18.697 11.585 -7.392 23.204 Atomic orbital electron populations 1.21664 0.93775 1.02383 1.02306 1.20855 0.97408 0.94027 1.02648 1.23662 0.93885 0.98060 0.95288 1.21535 1.03519 0.96709 0.97563 1.20689 1.03232 0.89564 1.02414 1.19035 0.78279 0.80337 0.87629 1.90799 1.61491 1.72056 1.22051 1.46081 1.38921 1.35087 1.15183 1.22185 0.95480 0.88726 0.91591 0.88288 1.23713 0.84697 0.96497 0.99293 1.88824 1.29120 1.23417 1.87379 1.23398 0.94340 0.83891 0.94804 1.22067 0.93921 0.90996 0.88134 1.46256 1.09980 1.68844 1.11562 1.19388 0.91501 1.29526 0.96096 0.90201 1.25627 1.00436 1.02798 0.97159 1.69996 1.26205 1.52723 1.11191 0.85057 0.78292 0.78006 0.77838 1.20894 1.21921 1.19679 1.23142 0.87214 0.94416 0.97531 1.23091 0.95008 0.98334 1.00155 0.90686 0.92002 0.93722 0.88612 0.93585 0.82780 0.89742 0.89114 0.93036 0.74622 0.89559 0.92398 0.93276 0.94076 0.94193 0.93636 0.91078 0.87073 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.90 71.98 0.71 -0.94 16 2 C -0.11 -1.45 6.18 29.85 0.18 -1.27 16 3 C -0.09 -1.09 9.20 24.52 0.23 -0.87 16 4 C -0.19 -3.19 5.74 -18.70 -0.11 -3.30 16 5 C -0.10 -1.37 10.03 71.24 0.71 -0.65 16 6 C 0.56 13.18 5.26 86.57 0.46 13.64 16 7 O -0.58 -19.02 16.81 -4.06 -0.07 -19.09 16 8 N -0.70 -14.40 5.00 -440.98 -2.20 -16.61 16 9 C 0.13 3.17 3.35 46.08 0.15 3.33 16 10 H 0.10 2.61 7.66 -2.38 -0.02 2.60 16 11 C 0.04 1.12 7.51 72.38 0.54 1.66 16 12 O -0.37 -15.03 11.35 -148.98 -1.69 -16.72 16 13 C 0.08 2.91 1.28 -10.65 -0.01 2.89 16 14 C 0.17 8.38 7.05 86.03 0.61 8.98 16 15 N -0.64 -34.26 3.71 -744.82 -2.76 -37.02 16 16 C -0.24 -13.92 10.70 84.03 0.90 -13.02 16 17 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 19 N -0.95 -58.80 11.40 21.65 0.25 -58.55 16 20 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 C 0.10 4.22 8.49 86.03 0.73 4.95 16 25 C -0.13 -3.24 6.21 31.56 0.20 -3.05 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.83 6.31 -2.39 -0.02 0.81 16 31 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.84 8.07 -2.39 -0.02 0.82 16 34 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 35 H 0.42 6.46 8.34 -92.71 -0.77 5.69 16 36 H 0.09 2.54 7.93 -2.39 -0.02 2.52 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.04 2.29 7.20 -2.39 -0.02 2.28 16 40 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.57 8.00 -2.39 -0.02 2.55 16 43 H 0.11 2.41 7.95 -2.38 -0.02 2.39 16 44 H 0.10 2.27 7.75 -2.39 -0.02 2.25 16 Total: -1.00 -77.21 362.21 1.53 -75.68 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.21 Total: 14.26 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.77 Total: 8.86 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.72 Total: -112.18 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.76 Total: -35.81 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.21 1.53 -75.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755057653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.341 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds