Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34217 * 125.44150 * 2 1 4 4 C 1.33651 * 110.90884 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.79694 * 180.02562 * 4 3 2 6 6 C 1.36413 * 108.39735 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19092 * 179.97438 * 6 4 3 8 8 O 1.21614 * 120.00054 * 90.01712 * 7 6 4 9 9 N 1.34776 * 120.00109 * 270.01958 * 7 6 4 10 10 C 1.46500 * 120.00386 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46878 * 35.00073 * 10 9 7 12 12 C 1.53001 * 109.47290 * 275.00236 * 10 9 7 13 13 C 1.52999 * 109.47037 * 154.99951 * 10 9 7 14 14 H 1.09004 * 109.47434 * 295.00363 * 13 10 9 15 15 C 1.52997 * 109.47114 * 55.00170 * 13 10 9 16 16 N 1.46498 * 109.46963 * 174.99963 * 13 10 9 17 17 C 1.36943 * 119.99752 * 154.72381 * 16 13 10 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 13 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 13 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.34178 * 125.43498 * 180.29814 * 2 1 3 26 26 C 1.50700 * 127.02536 * 0.02562 * 25 2 1 27 27 H 1.09003 * 109.47201 * 359.97339 * 1 2 3 28 28 H 1.08996 * 109.47175 * 119.97561 * 1 2 3 29 29 H 1.09003 * 109.47120 * 239.97316 * 1 2 3 30 30 H 1.09003 * 109.47474 * 269.99581 * 5 4 3 31 31 H 1.09000 * 109.47395 * 30.00068 * 5 4 3 32 32 H 1.09004 * 109.46931 * 149.99796 * 5 4 3 33 33 H 0.96999 * 119.99467 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.47050 * 59.99647 * 12 10 9 35 35 H 1.08998 * 109.47150 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47005 * 300.00291 * 12 10 9 37 37 H 1.09003 * 109.47189 * 300.00067 * 15 13 10 38 38 H 1.09009 * 109.47238 * 59.99946 * 15 13 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 15 13 10 40 40 H 0.97001 * 120.00384 * 335.00737 * 16 13 10 41 41 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47271 * 270.14084 * 26 25 2 43 43 H 1.09000 * 109.46984 * 30.14646 * 26 25 2 44 44 H 1.09004 * 109.47139 * 150.14226 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5790 0.7581 -0.0006 5 6 4.7390 1.7201 -0.0002 6 6 3.6710 -0.6029 -0.0015 7 6 4.9024 -1.4126 -0.0029 8 8 5.4111 -1.7477 1.0497 9 7 5.4649 -1.7818 -1.1707 10 6 6.6893 -2.5862 -1.1722 11 1 6.6698 -3.2790 -0.3309 12 6 7.9047 -1.6653 -1.0465 13 6 6.7799 -3.3747 -2.4802 14 1 5.9622 -4.0939 -2.5284 15 6 6.6817 -2.4110 -3.6645 16 7 8.0596 -4.0857 -2.5341 17 6 8.1812 -5.2202 -3.2914 18 1 7.3348 -5.5881 -3.8525 19 6 9.3921 -5.8972 -3.3379 20 7 10.4233 -5.4490 -2.6537 21 14 9.5581 -7.4443 -4.3715 22 1 9.2719 -7.1231 -5.7929 23 1 10.9404 -7.9736 -4.2519 24 1 8.5939 -8.4664 -3.8911 25 6 2.2849 -1.0932 -0.0057 26 6 1.8308 -2.5301 -0.0137 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5134 -0.8902 29 1 -0.3633 -0.5143 0.8898 30 1 5.0185 1.9527 -1.0278 31 1 4.4507 2.6367 0.5144 32 1 5.5869 1.2666 0.5132 33 1 5.0594 -1.5142 -2.0103 34 1 7.8401 -1.1036 -0.1146 35 1 8.8156 -2.2639 -1.0471 36 1 7.9241 -0.9725 -1.8877 37 1 5.7296 -1.8819 -3.6244 38 1 7.4994 -1.6917 -3.6164 39 1 6.7467 -2.9726 -4.5963 40 1 8.8197 -3.7553 -2.0301 41 1 11.2696 -5.9219 -2.6865 42 1 1.7185 -2.8814 1.0120 43 1 0.8741 -2.6059 -0.5306 44 1 2.5713 -3.1424 -0.5284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755243212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = -25.138435 kcal Electronic energy + Delta-G solvation = -24034.990876 eV Core-core repulsion = 20568.007442 eV Total energy + Delta-G solvation = -3466.983434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71011 -39.48040 -36.85440 -34.39958 -33.86759 -33.20259 -31.67384 -29.98693 -29.39696 -28.20609 -28.14455 -24.99796 -24.39189 -23.72853 -22.38125 -20.15669 -19.38686 -19.06351 -17.55226 -17.13646 -16.61688 -15.89196 -15.43462 -14.88343 -14.56809 -14.27802 -14.12279 -13.76603 -13.73275 -13.48160 -13.33478 -13.11617 -12.91165 -12.90260 -12.78348 -12.62895 -12.42137 -12.34892 -11.96639 -11.63582 -11.37643 -11.29737 -10.94122 -10.82069 -10.46965 -10.28686 -10.02818 -9.90524 -9.63550 -9.46072 -8.94009 -8.78642 -8.42481 -7.00837 -5.78589 -3.08152 1.47194 2.08741 2.59703 2.68483 3.42037 3.44619 3.48516 3.49707 4.28908 4.58309 4.68663 4.71481 4.92458 5.01546 5.12123 5.15367 5.22626 5.33149 5.37355 5.46783 5.52056 5.54294 5.60293 5.63426 5.65799 5.74279 5.80087 5.82861 6.02834 6.07167 6.15778 6.29554 6.32387 6.40558 6.48115 6.63371 6.72157 6.92668 6.96892 7.07216 7.67788 7.72049 8.38542 8.41420 9.51146 10.06499 10.41495 11.43972 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.003300 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.050829 B = 8483.192596 C = 8986.324193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 O -0.174 6.174 4 C 0.038 3.962 5 C -0.079 4.079 6 C -0.221 4.221 7 C 0.589 3.411 8 O -0.534 6.534 9 N -0.709 5.709 10 C 0.134 3.866 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.169 3.831 14 H 0.051 0.949 15 C -0.168 4.168 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.145 4.145 26 C -0.085 4.085 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 14.545 3.614 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 O -0.071 6.071 4 C -0.013 4.013 5 C -0.135 4.135 6 C -0.225 4.225 7 C 0.374 3.626 8 O -0.411 6.411 9 N -0.361 5.361 10 C 0.030 3.970 11 H 0.106 0.894 12 C -0.217 4.217 13 C 0.058 3.942 14 H 0.069 0.931 15 C -0.228 4.228 16 N -0.363 5.363 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.147 4.147 26 C -0.142 4.142 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.235 0.765 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.301 14.401 4.265 23.675 hybrid contribution 0.304 -0.761 -0.849 1.180 sum -17.997 13.640 3.415 22.839 Atomic orbital electron populations 1.20285 0.84831 1.03887 1.03588 1.21946 0.93696 0.83260 1.07859 1.83642 1.15999 1.35202 1.72267 1.22448 0.83173 0.93370 1.02354 1.20438 0.91788 0.97195 1.04101 1.21107 0.94122 0.93183 1.14115 1.17293 0.82194 0.79012 0.84143 1.90807 1.63646 1.55123 1.31503 1.46272 1.27766 1.54065 1.08028 1.21378 0.82661 0.92460 1.00507 0.89369 1.22141 0.98628 0.99938 1.01009 1.20348 0.91190 0.92320 0.90349 0.93077 1.22532 0.98894 1.00146 1.01263 1.42446 1.07581 1.29128 1.57107 1.19184 0.96216 1.00999 1.20882 0.91183 1.24742 0.96035 0.99427 1.00559 1.69649 1.01842 1.41336 1.45167 0.86257 0.76729 0.83171 0.79939 1.21276 1.21689 1.21244 1.21067 0.90130 0.96479 1.06994 1.20202 1.01330 0.90117 1.02526 0.90590 0.89655 0.89718 0.89369 0.89977 0.88919 0.76529 0.93131 0.90428 0.92490 0.94896 0.92790 0.92381 0.77763 0.93375 0.91039 0.91248 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 9.94 36.01 0.36 -0.09 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 O -0.17 -2.06 10.52 7.65 0.08 -1.98 16 4 C 0.04 0.46 7.37 -34.97 -0.26 0.20 16 5 C -0.08 -0.72 10.24 36.00 0.37 -0.35 16 6 C -0.22 -3.08 6.07 -103.28 -0.63 -3.71 16 7 C 0.59 9.51 7.22 -12.54 -0.09 9.42 16 8 O -0.53 -10.68 16.77 5.27 0.09 -10.59 16 9 N -0.71 -10.55 4.99 -54.90 -0.27 -10.82 16 10 C 0.13 2.36 2.62 -67.93 -0.18 2.19 16 11 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 12 C -0.16 -2.69 9.00 37.16 0.33 -2.36 16 13 C 0.17 3.27 2.93 -67.93 -0.20 3.07 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 C -0.17 -2.83 9.01 37.16 0.33 -2.50 16 16 N -0.72 -17.62 5.03 -53.43 -0.27 -17.88 16 17 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.14 -1.78 6.38 -102.49 -0.65 -2.44 16 26 C -0.09 -0.89 10.15 36.01 0.37 -0.53 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 33 H 0.40 5.13 6.56 -40.82 -0.27 4.86 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 36 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 37 H 0.03 0.44 6.29 -51.93 -0.33 0.11 16 38 H 0.05 0.91 6.57 -51.92 -0.34 0.57 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.39 9.99 5.77 -40.82 -0.24 9.76 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -33.10 363.83 -6.77 -39.87 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.82 Total: 10.62 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.75 Total: -4.73 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.18 Total: -55.87 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.17 Total: -12.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.10 -6.77 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.730 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds