Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34217 * 125.44150 * 2 1 4 4 C 1.33651 * 110.90884 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.79694 * 180.02562 * 4 3 2 6 6 C 1.36413 * 108.39735 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19092 * 179.97438 * 6 4 3 8 8 O 1.21614 * 120.00054 * 90.01712 * 7 6 4 9 9 N 1.34776 * 120.00109 * 270.01958 * 7 6 4 10 10 C 1.46500 * 120.00386 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46878 * 35.00073 * 10 9 7 12 12 C 1.53001 * 109.47290 * 275.00236 * 10 9 7 13 13 C 1.52999 * 109.47037 * 154.99951 * 10 9 7 14 14 H 1.09004 * 109.47434 * 295.00363 * 13 10 9 15 15 C 1.52997 * 109.47114 * 55.00170 * 13 10 9 16 16 N 1.46498 * 109.46963 * 174.99963 * 13 10 9 17 17 C 1.36943 * 119.99752 * 154.72381 * 16 13 10 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 13 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 13 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.34178 * 125.43498 * 180.29814 * 2 1 3 26 26 C 1.50700 * 127.02536 * 0.02562 * 25 2 1 27 27 H 1.09003 * 109.47201 * 359.97339 * 1 2 3 28 28 H 1.08996 * 109.47175 * 119.97561 * 1 2 3 29 29 H 1.09003 * 109.47120 * 239.97316 * 1 2 3 30 30 H 1.09003 * 109.47474 * 269.99581 * 5 4 3 31 31 H 1.09000 * 109.47395 * 30.00068 * 5 4 3 32 32 H 1.09004 * 109.46931 * 149.99796 * 5 4 3 33 33 H 0.96999 * 119.99467 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.47050 * 59.99647 * 12 10 9 35 35 H 1.08998 * 109.47150 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47005 * 300.00291 * 12 10 9 37 37 H 1.09003 * 109.47189 * 300.00067 * 15 13 10 38 38 H 1.09009 * 109.47238 * 59.99946 * 15 13 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 15 13 10 40 40 H 0.97001 * 120.00384 * 335.00737 * 16 13 10 41 41 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47271 * 270.14084 * 26 25 2 43 43 H 1.09000 * 109.46984 * 30.14646 * 26 25 2 44 44 H 1.09004 * 109.47139 * 150.14226 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5790 0.7581 -0.0006 5 6 4.7390 1.7201 -0.0002 6 6 3.6710 -0.6029 -0.0015 7 6 4.9024 -1.4126 -0.0029 8 8 5.4111 -1.7477 1.0497 9 7 5.4649 -1.7818 -1.1707 10 6 6.6893 -2.5862 -1.1722 11 1 6.6698 -3.2790 -0.3309 12 6 7.9047 -1.6653 -1.0465 13 6 6.7799 -3.3747 -2.4802 14 1 5.9622 -4.0939 -2.5284 15 6 6.6817 -2.4110 -3.6645 16 7 8.0596 -4.0857 -2.5341 17 6 8.1812 -5.2202 -3.2914 18 1 7.3348 -5.5881 -3.8525 19 6 9.3921 -5.8972 -3.3379 20 7 10.4233 -5.4490 -2.6537 21 14 9.5581 -7.4443 -4.3715 22 1 9.2719 -7.1231 -5.7929 23 1 10.9404 -7.9736 -4.2519 24 1 8.5939 -8.4664 -3.8911 25 6 2.2849 -1.0932 -0.0057 26 6 1.8308 -2.5301 -0.0137 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5134 -0.8902 29 1 -0.3633 -0.5143 0.8898 30 1 5.0185 1.9527 -1.0278 31 1 4.4507 2.6367 0.5144 32 1 5.5869 1.2666 0.5132 33 1 5.0594 -1.5142 -2.0103 34 1 7.8401 -1.1036 -0.1146 35 1 8.8156 -2.2639 -1.0471 36 1 7.9241 -0.9725 -1.8877 37 1 5.7296 -1.8819 -3.6244 38 1 7.4994 -1.6917 -3.6164 39 1 6.7467 -2.9726 -4.5963 40 1 8.8197 -3.7553 -2.0301 41 1 11.2696 -5.9219 -2.6865 42 1 1.7185 -2.8814 1.0120 43 1 0.8741 -2.6059 -0.5306 44 1 2.5713 -3.1424 -0.5284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = -46.776519 kcal Electronic energy + Delta-G solvation = -24035.929174 eV Core-core repulsion = 20568.007442 eV Total energy + Delta-G solvation = -3467.921732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60470 -40.85155 -38.42833 -35.61437 -35.24277 -34.17600 -33.38699 -31.05195 -30.55664 -29.83266 -29.04052 -26.21867 -25.92261 -25.01407 -23.75191 -21.28700 -20.72835 -20.25900 -19.43741 -18.31047 -17.54766 -17.03170 -16.75032 -16.59169 -16.03154 -15.78363 -15.39835 -15.14446 -14.72530 -14.53182 -14.39368 -14.26382 -13.92674 -13.87125 -13.67628 -13.50286 -13.46485 -13.32588 -13.11594 -13.03204 -13.00265 -12.77811 -12.65743 -12.21959 -12.17899 -12.04702 -11.68652 -11.64229 -11.20589 -10.94904 -10.45425 -10.18736 -9.25999 -9.04034 -7.93692 -5.22844 0.58045 1.17024 1.41287 1.48263 1.51120 1.56999 1.76096 2.18733 2.58610 3.39842 3.48560 3.67839 3.87281 3.89298 3.96797 4.05256 4.11882 4.29996 4.33799 4.39227 4.57057 4.58124 4.66425 4.67619 4.68298 4.78724 4.84698 4.86304 4.88441 4.93904 4.96446 5.01867 5.06730 5.17784 5.21840 5.23462 5.45306 5.52537 5.53495 5.60815 6.09248 6.28160 6.46512 7.13391 7.34893 8.08395 8.32267 9.29653 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.003300 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.050829 B = 8483.192596 C = 8986.324193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.011 4.011 3 O -0.176 6.176 4 C 0.043 3.957 5 C -0.080 4.080 6 C -0.254 4.254 7 C 0.596 3.404 8 O -0.580 6.580 9 N -0.694 5.694 10 C 0.148 3.852 11 H 0.056 0.944 12 C -0.149 4.149 13 C 0.167 3.833 14 H 0.045 0.955 15 C -0.157 4.157 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.280 1.280 25 C -0.170 4.170 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.103 15.913 2.430 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 O -0.073 6.073 4 C -0.008 4.008 5 C -0.136 4.136 6 C -0.259 4.259 7 C 0.383 3.617 8 O -0.459 6.459 9 N -0.346 5.346 10 C 0.042 3.958 11 H 0.074 0.926 12 C -0.207 4.207 13 C 0.058 3.942 14 H 0.063 0.937 15 C -0.217 4.217 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.206 1.206 25 C -0.171 4.171 26 C -0.139 4.139 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.892 15.798 3.041 26.369 hybrid contribution 0.968 -1.115 -0.438 1.541 sum -19.924 14.683 2.603 24.886 Atomic orbital electron populations 1.20521 0.81667 1.05289 1.05112 1.22691 0.95296 0.82339 1.05661 1.83681 1.15887 1.35695 1.72058 1.22883 0.83996 0.93187 1.00776 1.20573 0.90286 0.97257 1.05501 1.21040 0.93810 0.94006 1.17020 1.17588 0.82432 0.78333 0.83391 1.90780 1.65091 1.56997 1.33081 1.46031 1.26743 1.53233 1.08601 1.20973 0.84177 0.92301 0.98314 0.92579 1.22029 0.97102 0.99625 1.01979 1.20496 0.88765 0.92690 0.92239 0.93695 1.22347 1.01142 0.99393 0.98778 1.42631 1.09064 1.29106 1.56752 1.19582 0.96200 1.01390 1.20119 0.90497 1.25543 0.96008 1.02692 1.02420 1.69812 1.02142 1.42793 1.47231 0.85225 0.76177 0.79654 0.78774 1.20182 1.22379 1.20617 1.21319 0.89579 0.97729 1.08522 1.20219 1.02193 0.88972 1.02538 0.89285 0.87780 0.88355 0.87363 0.87891 0.90173 0.74968 0.92877 0.92705 0.90531 0.90961 0.92668 0.93687 0.78891 0.94030 0.91323 0.88325 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 9.94 71.24 0.71 0.05 16 2 C -0.01 -0.22 7.28 24.76 0.18 -0.04 16 3 O -0.18 -3.77 10.52 4.46 0.05 -3.72 16 4 C 0.04 0.99 7.37 25.26 0.19 1.17 16 5 C -0.08 -1.31 10.24 71.23 0.73 -0.58 16 6 C -0.25 -6.92 6.07 -18.99 -0.12 -7.03 16 7 C 0.60 19.34 7.22 86.65 0.63 19.96 16 8 O -0.58 -23.94 16.77 -4.08 -0.07 -24.01 16 9 N -0.69 -20.24 4.99 -445.84 -2.22 -22.46 16 10 C 0.15 5.26 2.62 44.99 0.12 5.38 16 11 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 12 C -0.15 -5.09 9.00 71.98 0.65 -4.44 16 13 C 0.17 6.44 2.93 44.99 0.13 6.58 16 14 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 15 C -0.16 -5.00 9.01 71.98 0.65 -4.36 16 16 N -0.73 -36.45 5.03 -322.94 -1.62 -38.08 16 17 C -0.24 -13.24 9.93 84.03 0.83 -12.41 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 21 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.17 -3.95 6.38 -18.49 -0.12 -4.07 16 26 C -0.08 -1.64 10.15 71.24 0.72 -0.92 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.54 7.93 -2.38 -0.02 1.52 16 33 H 0.41 9.82 6.56 -92.71 -0.61 9.21 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 2.14 6.29 -2.39 -0.02 2.12 16 36 H 0.08 2.28 6.57 -2.39 -0.02 2.27 16 37 H 0.07 1.72 6.29 -2.39 -0.02 1.71 16 38 H 0.05 1.76 6.57 -2.38 -0.02 1.74 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.38 20.09 5.77 -92.71 -0.54 19.55 16 41 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 44 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -73.24 363.83 4.08 -69.16 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.13 Total: 34.59 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.77 Total: -4.49 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.56 Total: -119.59 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.02 Total: -27.72 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.24 4.08 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.388 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds