Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34206 * 125.43785 * 2 1 4 4 C 1.33652 * 110.91094 * 179.72681 * 3 2 1 5 5 C 1.50701 * 125.80674 * 180.28887 * 4 3 2 6 6 C 1.36415 * 108.39445 * 0.45129 * 4 3 2 7 7 C 1.47383 * 127.19433 * 179.83740 * 6 4 3 8 8 O 1.21612 * 119.99694 * 269.68173 * 7 6 4 9 9 N 1.34769 * 119.99982 * 89.68533 * 7 6 4 10 10 C 1.46501 * 120.00027 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46765 * 324.99357 * 10 9 7 12 12 C 1.52998 * 109.47438 * 84.99378 * 10 9 7 13 13 C 1.53004 * 109.47172 * 204.99809 * 10 9 7 14 14 H 1.09002 * 109.47194 * 64.99897 * 13 10 9 15 15 C 1.52995 * 109.46864 * 304.99494 * 13 10 9 16 16 N 1.46499 * 109.46824 * 184.99668 * 13 10 9 17 17 C 1.36935 * 119.99926 * 204.99960 * 16 13 10 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 13 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.34179 * 125.43447 * 180.02562 * 2 1 3 26 26 C 1.50697 * 127.02426 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47270 * 270.00091 * 1 2 3 28 28 H 1.09003 * 109.47320 * 29.99815 * 1 2 3 29 29 H 1.09000 * 109.47723 * 149.99724 * 1 2 3 30 30 H 1.09007 * 109.46717 * 270.18856 * 5 4 3 31 31 H 1.08998 * 109.47104 * 30.18996 * 5 4 3 32 32 H 1.09001 * 109.47322 * 150.19200 * 5 4 3 33 33 H 0.96996 * 120.00090 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47159 * 60.00221 * 12 10 9 35 35 H 1.08998 * 109.47241 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.47318 * 300.00156 * 12 10 9 37 37 H 1.09007 * 109.47281 * 60.00379 * 15 13 10 38 38 H 1.09003 * 109.47025 * 179.97438 * 15 13 10 39 39 H 1.09002 * 109.47544 * 300.00188 * 15 13 10 40 40 H 0.97005 * 120.00261 * 25.00085 * 16 13 10 41 41 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47130 * 269.97538 * 26 25 2 43 43 H 1.09002 * 109.47133 * 29.97803 * 26 25 2 44 44 H 1.08998 * 109.47008 * 149.97876 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2851 1.0934 0.0000 4 6 3.5789 0.7582 0.0060 5 6 4.7389 1.7202 0.0140 6 6 3.6710 -0.6028 -0.0001 7 6 4.9025 -1.4125 -0.0002 8 8 5.4105 -1.7465 -1.0534 9 7 5.4655 -1.7828 1.1669 10 6 6.6899 -2.5872 1.1669 11 1 6.6699 -3.2792 0.3249 12 6 7.9052 -1.6663 1.0414 13 6 6.7813 -3.3771 2.4741 14 1 5.9637 -4.0964 2.5219 15 6 6.6838 -2.4146 3.6593 16 7 8.0610 -4.0882 2.5264 17 6 8.1846 -5.2202 3.2870 18 1 7.3388 -5.5885 3.8485 19 6 9.3956 -5.8973 3.3322 20 7 10.4249 -5.4514 2.6436 21 14 9.5640 -7.4419 4.3691 22 1 8.2714 -7.7308 5.0404 23 1 9.9360 -8.5851 3.4975 24 1 10.6188 -7.2373 5.3942 25 6 2.2849 -1.0933 -0.0005 26 6 1.8307 -2.5302 -0.0017 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 5.0217 1.9568 -1.0118 31 1 4.4490 2.6347 0.5312 32 1 5.5852 1.2646 0.5282 33 1 5.0604 -1.5161 2.0070 34 1 7.9252 -0.9743 1.8834 35 1 8.8161 -2.2648 1.0410 36 1 7.8401 -1.1036 0.1102 37 1 5.7316 -1.8854 3.6204 38 1 6.7484 -2.9773 4.5906 39 1 7.5014 -1.6953 3.6115 40 1 8.8208 -3.7572 2.0224 41 1 11.2711 -5.9247 2.6749 42 1 1.7213 -2.8774 1.0257 43 1 0.8726 -2.6079 -0.5156 44 1 2.5698 -3.1444 -0.5160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755243213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -25.027155 kcal Electronic energy + Delta-G solvation = -24035.719300 eV Core-core repulsion = 20568.740691 eV Total energy + Delta-G solvation = -3466.978609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71339 -39.48403 -36.85732 -34.41445 -33.87753 -33.20697 -31.67405 -29.97872 -29.40160 -28.20906 -28.14712 -25.00467 -24.40172 -23.73565 -22.38107 -20.15707 -19.38706 -19.06493 -17.55506 -17.13671 -16.62210 -15.89834 -15.43379 -14.90132 -14.58957 -14.28324 -14.12578 -13.82985 -13.70377 -13.49791 -13.33085 -13.12575 -12.93054 -12.90444 -12.79588 -12.55528 -12.39469 -12.34454 -11.97516 -11.63980 -11.39177 -11.29478 -10.95740 -10.84084 -10.47799 -10.25185 -10.00480 -9.90171 -9.64508 -9.46356 -8.95348 -8.78976 -8.42917 -7.00958 -5.79122 -3.08567 1.47044 2.08716 2.59126 2.68290 3.41456 3.44061 3.49195 3.50353 4.28486 4.57968 4.68614 4.70703 4.90662 5.02335 5.11264 5.14383 5.23186 5.32973 5.37126 5.46099 5.50533 5.55209 5.59520 5.63227 5.65542 5.74245 5.80474 5.82433 6.02567 6.06862 6.15348 6.29255 6.32283 6.40264 6.47726 6.62987 6.71970 6.92348 6.96708 7.06852 7.68532 7.71765 8.38085 8.41014 9.50761 10.06119 10.41089 11.43553 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.003299 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.615538 B = 8485.979209 C = 8986.308048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 O -0.174 6.174 4 C 0.038 3.962 5 C -0.078 4.078 6 C -0.221 4.221 7 C 0.589 3.411 8 O -0.534 6.534 9 N -0.709 5.709 10 C 0.135 3.865 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.169 3.831 14 H 0.051 0.949 15 C -0.168 4.168 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.145 4.145 26 C -0.086 4.086 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.650 14.557 -3.573 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 O -0.071 6.071 4 C -0.013 4.013 5 C -0.134 4.134 6 C -0.225 4.225 7 C 0.374 3.626 8 O -0.410 6.410 9 N -0.362 5.362 10 C 0.030 3.970 11 H 0.106 0.894 12 C -0.218 4.218 13 C 0.058 3.942 14 H 0.069 0.931 15 C -0.228 4.228 16 N -0.363 5.363 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.146 4.146 26 C -0.143 4.143 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.388 14.413 -4.223 23.742 hybrid contribution 0.330 -0.756 0.838 1.176 sum -18.058 13.657 -3.385 22.892 Atomic orbital electron populations 1.20297 0.84834 1.03997 1.03514 1.21939 0.93699 0.83279 1.07841 1.83632 1.15982 1.35195 1.72305 1.22452 0.83178 0.93370 1.02331 1.20428 0.91644 0.97132 1.04238 1.21107 0.94123 0.93177 1.14132 1.17291 0.82182 0.79025 0.84147 1.90806 1.63599 1.55194 1.31439 1.46271 1.27783 1.54077 1.08034 1.21375 0.82647 0.92455 1.00511 0.89364 1.22146 0.98649 0.99952 1.01010 1.20350 0.91193 0.92317 0.90350 0.93058 1.22533 0.98897 1.00148 1.01266 1.42461 1.07619 1.29261 1.56955 1.19271 0.96235 1.01011 1.20590 0.91075 1.24744 0.96073 0.99451 1.00565 1.69667 1.01939 1.41284 1.45057 0.86114 0.77413 0.83084 0.79545 1.20559 1.21845 1.21884 1.21069 0.90128 0.96468 1.06969 1.20225 1.01384 0.90177 1.02486 0.90052 0.90597 0.89314 0.89401 0.89947 0.88994 0.76525 0.92498 0.90411 0.93107 0.94897 0.92375 0.92786 0.77770 0.93483 0.90921 0.91291 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.21 36.01 0.37 -0.09 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 O -0.17 -2.06 10.52 7.68 0.08 -1.98 16 4 C 0.04 0.46 7.37 -34.96 -0.26 0.21 16 5 C -0.08 -0.71 10.24 36.01 0.37 -0.35 16 6 C -0.22 -3.08 6.07 -103.27 -0.63 -3.71 16 7 C 0.59 9.50 7.22 -12.54 -0.09 9.41 16 8 O -0.53 -10.68 16.77 5.27 0.09 -10.59 16 9 N -0.71 -10.53 4.99 -54.89 -0.27 -10.80 16 10 C 0.13 2.36 2.62 -67.93 -0.18 2.19 16 11 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 12 C -0.16 -2.69 9.00 37.16 0.33 -2.36 16 13 C 0.17 3.26 2.93 -67.93 -0.20 3.06 16 14 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 15 C -0.17 -2.83 9.01 37.15 0.33 -2.49 16 16 N -0.72 -17.60 5.03 -53.43 -0.27 -17.87 16 17 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.14 -1.78 6.38 -102.49 -0.65 -2.43 16 26 C -0.09 -0.90 10.15 36.00 0.37 -0.53 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.46 7.14 -51.93 -0.37 0.09 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.85 7.93 -51.93 -0.41 0.44 16 33 H 0.40 5.11 6.56 -40.82 -0.27 4.85 16 34 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 35 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.44 6.29 -51.93 -0.33 0.11 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.91 6.57 -51.93 -0.34 0.57 16 40 H 0.39 9.98 5.77 -40.82 -0.24 9.74 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.55 7.15 -51.93 -0.37 0.18 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -33.14 362.34 -6.69 -39.83 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.73 Total: 10.58 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.74 Total: -4.70 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.18 Total: -55.80 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.17 Total: -12.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.14 -6.69 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.798 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds