Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34206 * 125.43785 * 2 1 4 4 C 1.33652 * 110.91094 * 179.72681 * 3 2 1 5 5 C 1.50701 * 125.80674 * 180.28887 * 4 3 2 6 6 C 1.36415 * 108.39445 * 0.45129 * 4 3 2 7 7 C 1.47383 * 127.19433 * 179.83740 * 6 4 3 8 8 O 1.21612 * 119.99694 * 269.68173 * 7 6 4 9 9 N 1.34769 * 119.99982 * 89.68533 * 7 6 4 10 10 C 1.46501 * 120.00027 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46765 * 324.99357 * 10 9 7 12 12 C 1.52998 * 109.47438 * 84.99378 * 10 9 7 13 13 C 1.53004 * 109.47172 * 204.99809 * 10 9 7 14 14 H 1.09002 * 109.47194 * 64.99897 * 13 10 9 15 15 C 1.52995 * 109.46864 * 304.99494 * 13 10 9 16 16 N 1.46499 * 109.46824 * 184.99668 * 13 10 9 17 17 C 1.36935 * 119.99926 * 204.99960 * 16 13 10 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 13 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.34179 * 125.43447 * 180.02562 * 2 1 3 26 26 C 1.50697 * 127.02426 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47270 * 270.00091 * 1 2 3 28 28 H 1.09003 * 109.47320 * 29.99815 * 1 2 3 29 29 H 1.09000 * 109.47723 * 149.99724 * 1 2 3 30 30 H 1.09007 * 109.46717 * 270.18856 * 5 4 3 31 31 H 1.08998 * 109.47104 * 30.18996 * 5 4 3 32 32 H 1.09001 * 109.47322 * 150.19200 * 5 4 3 33 33 H 0.96996 * 120.00090 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47159 * 60.00221 * 12 10 9 35 35 H 1.08998 * 109.47241 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.47318 * 300.00156 * 12 10 9 37 37 H 1.09007 * 109.47281 * 60.00379 * 15 13 10 38 38 H 1.09003 * 109.47025 * 179.97438 * 15 13 10 39 39 H 1.09002 * 109.47544 * 300.00188 * 15 13 10 40 40 H 0.97005 * 120.00261 * 25.00085 * 16 13 10 41 41 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47130 * 269.97538 * 26 25 2 43 43 H 1.09002 * 109.47133 * 29.97803 * 26 25 2 44 44 H 1.08998 * 109.47008 * 149.97876 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2851 1.0934 0.0000 4 6 3.5789 0.7582 0.0060 5 6 4.7389 1.7202 0.0140 6 6 3.6710 -0.6028 -0.0001 7 6 4.9025 -1.4125 -0.0002 8 8 5.4105 -1.7465 -1.0534 9 7 5.4655 -1.7828 1.1669 10 6 6.6899 -2.5872 1.1669 11 1 6.6699 -3.2792 0.3249 12 6 7.9052 -1.6663 1.0414 13 6 6.7813 -3.3771 2.4741 14 1 5.9637 -4.0964 2.5219 15 6 6.6838 -2.4146 3.6593 16 7 8.0610 -4.0882 2.5264 17 6 8.1846 -5.2202 3.2870 18 1 7.3388 -5.5885 3.8485 19 6 9.3956 -5.8973 3.3322 20 7 10.4249 -5.4514 2.6436 21 14 9.5640 -7.4419 4.3691 22 1 8.2714 -7.7308 5.0404 23 1 9.9360 -8.5851 3.4975 24 1 10.6188 -7.2373 5.3942 25 6 2.2849 -1.0933 -0.0005 26 6 1.8307 -2.5302 -0.0017 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 5.0217 1.9568 -1.0118 31 1 4.4490 2.6347 0.5312 32 1 5.5852 1.2646 0.5282 33 1 5.0604 -1.5161 2.0070 34 1 7.9252 -0.9743 1.8834 35 1 8.8161 -2.2648 1.0410 36 1 7.8401 -1.1036 0.1102 37 1 5.7316 -1.8854 3.6204 38 1 6.7484 -2.9773 4.5906 39 1 7.5014 -1.6953 3.6115 40 1 8.8208 -3.7572 2.0224 41 1 11.2711 -5.9247 2.6749 42 1 1.7213 -2.8774 1.0257 43 1 0.8726 -2.6079 -0.5156 44 1 2.5698 -3.1444 -0.5160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -46.749518 kcal Electronic energy + Delta-G solvation = -24036.661252 eV Core-core repulsion = 20568.740691 eV Total energy + Delta-G solvation = -3467.920561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60722 -40.85390 -38.42992 -35.61797 -35.25736 -34.18743 -33.38279 -31.05185 -30.55069 -29.83293 -29.04200 -26.22246 -25.92870 -25.02606 -23.74973 -21.28726 -20.72979 -20.25528 -19.43999 -18.30934 -17.55197 -17.03804 -16.74916 -16.59685 -16.03630 -15.79252 -15.40075 -15.14145 -14.74631 -14.58869 -14.37087 -14.26977 -13.93679 -13.87931 -13.68523 -13.52872 -13.47724 -13.26877 -13.11815 -13.00107 -12.95765 -12.83420 -12.67238 -12.23778 -12.08197 -12.05534 -11.69102 -11.63720 -11.20851 -10.97421 -10.45459 -10.18834 -9.26508 -9.04119 -7.94077 -5.23084 0.57727 1.17197 1.41238 1.48235 1.49001 1.58700 1.75754 2.18507 2.58238 3.39846 3.48223 3.67425 3.87077 3.89163 3.96632 4.05021 4.11729 4.29543 4.32692 4.40364 4.55257 4.57917 4.64723 4.67882 4.68240 4.79712 4.83261 4.84984 4.90059 4.93940 4.97679 5.01735 5.06829 5.17721 5.21171 5.23433 5.45340 5.52875 5.53793 5.60754 6.09149 6.28038 6.46360 7.13286 7.34758 8.08123 8.31948 9.29652 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.003299 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.615538 B = 8485.979209 C = 8986.308048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.012 4.012 3 O -0.176 6.176 4 C 0.043 3.957 5 C -0.080 4.080 6 C -0.254 4.254 7 C 0.596 3.404 8 O -0.579 6.579 9 N -0.694 5.694 10 C 0.148 3.852 11 H 0.056 0.944 12 C -0.150 4.150 13 C 0.167 3.833 14 H 0.045 0.955 15 C -0.157 4.157 16 N -0.733 5.733 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.297 1.297 24 H -0.293 1.293 25 C -0.169 4.169 26 C -0.083 4.083 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.203 15.926 -2.430 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 O -0.073 6.073 4 C -0.008 4.008 5 C -0.136 4.136 6 C -0.259 4.259 7 C 0.383 3.617 8 O -0.459 6.459 9 N -0.346 5.346 10 C 0.042 3.958 11 H 0.074 0.926 12 C -0.208 4.208 13 C 0.058 3.942 14 H 0.063 0.937 15 C -0.217 4.217 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.224 1.224 24 H -0.221 1.221 25 C -0.171 4.171 26 C -0.140 4.140 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.211 0.789 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.012 15.811 -3.040 26.471 hybrid contribution 1.006 -1.110 0.440 1.562 sum -20.006 14.700 -2.600 24.962 Atomic orbital electron populations 1.20532 0.81684 1.05373 1.05053 1.22678 0.95292 0.82356 1.05683 1.83670 1.15884 1.35693 1.72094 1.22886 0.83993 0.93182 1.00770 1.20574 0.90518 0.97579 1.04945 1.21042 0.93818 0.93997 1.17007 1.17585 0.82417 0.78346 0.83398 1.90780 1.65047 1.57062 1.33022 1.46030 1.26765 1.53241 1.08603 1.20971 0.84162 0.92298 0.98322 0.92571 1.22034 0.97118 0.99641 1.01989 1.20498 0.88763 0.92687 0.92243 0.93669 1.22349 1.01145 0.99401 0.98788 1.42647 1.09101 1.29244 1.56585 1.19646 0.96166 1.01367 1.19780 0.90460 1.25538 0.96074 1.02689 1.02440 1.69821 1.02278 1.42766 1.47121 0.85093 0.77706 0.79282 0.77795 1.18921 1.22407 1.22071 1.21327 0.89582 0.97732 1.08470 1.20240 1.01764 0.88897 1.03065 0.88276 0.89338 0.87815 0.88855 0.87369 0.89233 0.74961 0.90526 0.92692 0.92853 0.90969 0.93657 0.92664 0.78891 0.94056 0.90004 0.88724 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.21 71.24 0.73 0.06 16 2 C -0.01 -0.22 7.28 24.76 0.18 -0.04 16 3 O -0.18 -3.77 10.52 4.56 0.05 -3.73 16 4 C 0.04 0.99 7.37 25.26 0.19 1.18 16 5 C -0.08 -1.31 10.24 71.24 0.73 -0.58 16 6 C -0.25 -6.91 6.07 -18.99 -0.12 -7.02 16 7 C 0.60 19.31 7.22 86.65 0.63 19.93 16 8 O -0.58 -23.91 16.77 -4.07 -0.07 -23.98 16 9 N -0.69 -20.19 4.99 -445.84 -2.22 -22.41 16 10 C 0.15 5.25 2.62 44.99 0.12 5.37 16 11 H 0.06 2.38 7.58 -2.38 -0.02 2.36 16 12 C -0.15 -5.09 9.00 71.98 0.65 -4.44 16 13 C 0.17 6.42 2.93 44.99 0.13 6.56 16 14 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 15 C -0.16 -4.99 9.01 71.98 0.65 -4.35 16 16 N -0.73 -36.38 5.03 -322.94 -1.63 -38.01 16 17 C -0.24 -13.03 9.93 84.03 0.83 -12.19 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 21 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 C -0.17 -3.94 6.38 -18.49 -0.12 -4.05 16 26 C -0.08 -1.64 10.15 71.23 0.72 -0.92 16 27 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.69 7.14 -2.39 -0.02 0.68 16 30 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.51 7.93 -2.39 -0.02 1.49 16 33 H 0.41 9.79 6.56 -92.71 -0.61 9.18 16 34 H 0.08 2.27 6.57 -2.38 -0.02 2.26 16 35 H 0.05 2.14 6.29 -2.39 -0.02 2.12 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.71 6.29 -2.38 -0.01 1.70 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.75 6.57 -2.39 -0.02 1.74 16 40 H 0.38 20.05 5.77 -92.70 -0.54 19.52 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.31 7.15 -2.39 -0.02 1.29 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.29 362.34 4.10 -69.19 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.12 Total: 34.20 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.78 Total: -4.33 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -3.56 Total: -119.41 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.02 Total: -27.71 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.29 4.10 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.440 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds