Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34215 * 125.43484 * 2 1 4 4 C 1.33651 * 110.91061 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.80829 * 179.97438 * 4 3 2 6 6 C 1.36417 * 108.39506 * 0.02562 * 4 3 2 7 7 C 1.47381 * 127.19477 * 179.97438 * 6 4 3 8 8 O 1.21613 * 119.99816 * 90.02478 * 7 6 4 9 9 N 1.34777 * 120.00222 * 270.02978 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27565 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 H 1.08995 * 109.47266 * 59.99845 * 13 10 9 15 15 C 1.53004 * 109.46947 * 299.99341 * 13 10 9 16 16 N 1.46507 * 109.47137 * 179.97438 * 13 10 9 17 17 C 1.36936 * 120.00163 * 205.00109 * 16 13 10 18 18 H 1.08002 * 119.99631 * 359.97438 * 17 16 13 19 19 C 1.38806 * 120.00202 * 179.97438 * 17 16 13 20 20 N 1.31624 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46920 * 60.00045 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47150 * 300.00017 * 21 19 17 25 25 C 1.34179 * 125.44040 * 180.29689 * 2 1 3 26 26 C 1.50700 * 127.01970 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47317 * 359.97050 * 1 2 3 28 28 H 1.09000 * 109.47102 * 119.97512 * 1 2 3 29 29 H 1.09000 * 109.47033 * 239.97429 * 1 2 3 30 30 H 1.08998 * 109.47000 * 270.00663 * 5 4 3 31 31 H 1.09005 * 109.46685 * 30.00124 * 5 4 3 32 32 H 1.08992 * 109.47718 * 150.00403 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 35 35 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 36 36 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 37 37 H 1.08994 * 109.47427 * 299.99790 * 15 13 10 38 38 H 1.08999 * 109.46966 * 60.00966 * 15 13 10 39 39 H 1.09010 * 109.46876 * 179.97438 * 15 13 10 40 40 H 0.97000 * 119.99602 * 24.99287 * 16 13 10 41 41 H 0.96995 * 120.00144 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47223 * 270.13435 * 26 25 2 43 43 H 1.08996 * 109.47522 * 30.14068 * 26 25 2 44 44 H 1.09005 * 109.46483 * 150.14278 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2851 1.0936 0.0000 4 6 3.5789 0.7584 0.0006 5 6 4.7389 1.7203 0.0002 6 6 3.6710 -0.6027 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4103 -1.7469 1.0535 9 7 5.4660 -1.7819 -1.1669 10 6 6.6867 -2.5918 -1.1669 11 1 6.6645 -3.2826 -0.3240 12 6 7.9062 -1.6762 -1.0438 13 6 6.7734 -3.3837 -2.4732 14 1 6.7956 -2.6929 -3.3160 15 6 5.5538 -4.2995 -2.5962 16 7 7.9945 -4.1932 -2.4735 17 6 8.5637 -4.5733 -3.6595 18 1 8.1122 -4.2766 -4.5947 19 6 9.7210 -5.3398 -3.6598 20 7 10.2715 -5.7009 -2.5200 21 14 10.4971 -5.8589 -5.2777 22 1 10.8663 -4.6514 -6.0594 23 1 11.7151 -6.6640 -5.0066 24 1 9.5273 -6.6731 -6.0531 25 6 2.2850 -1.0932 -0.0057 26 6 1.8309 -2.5301 -0.0136 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5134 -0.8902 29 1 -0.3633 -0.5142 0.8898 30 1 5.0188 1.9516 -1.0276 31 1 4.4503 2.6377 0.5134 32 1 5.5866 1.2676 0.5144 33 1 5.0608 -1.5153 -2.0069 34 1 8.8146 -2.2787 -1.0442 35 1 7.9285 -0.9853 -1.8867 36 1 7.8445 -1.1120 -0.1132 37 1 5.5317 -4.9903 -1.7534 38 1 4.6456 -3.6969 -2.5963 39 1 5.6153 -4.8633 -3.5271 40 1 8.3998 -4.4598 -1.6335 41 1 11.0803 -6.2362 -2.5202 42 1 1.7187 -2.8814 1.0121 43 1 0.8742 -2.6060 -0.5304 44 1 2.5715 -3.1423 -0.5284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755243214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = -29.526923 kcal Electronic energy + Delta-G solvation = -24037.381052 eV Core-core repulsion = 20570.207319 eV Total energy + Delta-G solvation = -3467.173734 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70995 -39.44231 -36.68028 -34.40029 -33.88791 -33.20289 -31.64463 -30.00016 -29.52432 -28.42974 -28.10336 -24.90738 -24.00279 -23.65989 -22.04460 -20.15875 -19.97095 -19.16382 -17.46376 -17.14548 -16.61103 -15.89790 -15.49117 -14.80966 -14.59142 -14.14460 -13.86208 -13.74514 -13.63166 -13.44005 -13.18735 -13.10533 -13.06609 -12.91039 -12.84661 -12.62991 -12.41969 -12.37184 -11.85894 -11.69701 -11.38117 -11.16853 -10.95012 -10.82914 -10.68236 -10.24845 -9.99938 -9.86208 -9.64914 -9.45983 -9.01132 -8.74539 -8.42436 -6.99568 -5.77904 -3.07633 1.47245 2.08715 2.59740 2.68607 3.41750 3.43317 3.48334 3.49384 4.28899 4.58251 4.68659 4.71583 4.92469 5.01094 5.12142 5.15263 5.22934 5.30868 5.36106 5.48851 5.51925 5.53823 5.59760 5.68600 5.73966 5.76367 5.79824 5.90391 6.02930 6.11024 6.22875 6.31486 6.40267 6.43018 6.53695 6.63196 6.81135 6.95457 6.96949 7.03308 7.67379 7.71945 8.38364 8.41129 9.50998 10.06315 10.41573 11.44410 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.003258 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.325096 B = 8592.819813 C = 8994.287297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 O -0.174 6.174 4 C 0.038 3.962 5 C -0.079 4.079 6 C -0.221 4.221 7 C 0.590 3.410 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.134 3.866 11 H 0.085 0.915 12 C -0.152 4.152 13 C 0.169 3.831 14 H 0.050 0.950 15 C -0.164 4.164 16 N -0.718 5.718 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.145 4.145 26 C -0.085 4.085 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.909 13.999 3.974 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 O -0.071 6.071 4 C -0.013 4.013 5 C -0.135 4.135 6 C -0.225 4.225 7 C 0.375 3.625 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.030 3.970 11 H 0.103 0.897 12 C -0.210 4.210 13 C 0.059 3.941 14 H 0.068 0.932 15 C -0.224 4.224 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.552 13.984 4.556 23.675 hybrid contribution 0.457 -0.498 -1.022 1.225 sum -18.096 13.486 3.534 22.843 Atomic orbital electron populations 1.20284 0.84846 1.03885 1.03581 1.21946 0.93694 0.83266 1.07872 1.83642 1.16008 1.35206 1.72263 1.22453 0.83166 0.93383 1.02335 1.20436 0.91780 0.97190 1.04111 1.21102 0.94110 0.93168 1.14125 1.17257 0.82159 0.79003 0.84088 1.90806 1.63685 1.55210 1.31404 1.46094 1.27929 1.53779 1.07933 1.21384 0.82701 0.92430 1.00504 0.89665 1.22050 0.98772 0.99773 1.00437 1.20381 0.88322 0.91999 0.93428 0.93186 1.22446 0.97711 1.00341 1.01936 1.42284 1.25994 1.61064 1.06640 1.19143 1.05385 1.26684 0.85849 0.91224 1.24735 0.98346 1.00921 0.96747 1.69652 1.22268 1.42031 1.23950 0.86276 0.78641 0.78193 0.83092 1.21284 1.21711 1.21305 1.21061 0.90130 0.96455 1.06987 1.20202 1.01324 0.90134 1.02501 0.90594 0.89660 0.89726 0.89358 0.89994 0.88917 0.76771 0.90032 0.93041 0.93478 0.93409 0.94587 0.92649 0.78038 0.93390 0.91070 0.91270 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 9.94 36.00 0.36 -0.09 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 O -0.17 -2.05 10.52 7.66 0.08 -1.97 16 4 C 0.04 0.46 7.37 -34.97 -0.26 0.20 16 5 C -0.08 -0.72 10.24 36.00 0.37 -0.35 16 6 C -0.22 -3.05 6.07 -103.27 -0.63 -3.68 16 7 C 0.59 9.41 7.22 -12.54 -0.09 9.32 16 8 O -0.53 -10.60 16.77 5.27 0.09 -10.51 16 9 N -0.71 -10.35 4.38 -54.90 -0.24 -10.59 16 10 C 0.13 2.34 2.21 -67.93 -0.15 2.19 16 11 H 0.09 1.68 7.57 -51.93 -0.39 1.29 16 12 C -0.15 -2.64 9.33 37.16 0.35 -2.29 16 13 C 0.17 3.25 2.52 -67.93 -0.17 3.08 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.92 9.34 37.16 0.35 -2.58 16 16 N -0.72 -17.42 4.43 -53.42 -0.24 -17.66 16 17 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 C -0.14 -1.76 6.38 -102.49 -0.65 -2.42 16 26 C -0.08 -0.88 10.15 36.01 0.37 -0.52 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 33 H 0.40 4.99 8.37 -40.82 -0.34 4.64 16 34 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 39 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.39 10.10 7.58 -40.82 -0.31 9.79 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -32.73 371.52 -6.93 -39.67 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.26 Total: 10.06 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.67 Total: -4.61 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.25 Total: -55.29 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.17 Total: -12.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.73 -6.93 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.138 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds