Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34215 * 125.43484 * 2 1 4 4 C 1.33651 * 110.91061 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.80829 * 179.97438 * 4 3 2 6 6 C 1.36417 * 108.39506 * 0.02562 * 4 3 2 7 7 C 1.47381 * 127.19477 * 179.97438 * 6 4 3 8 8 O 1.21613 * 119.99816 * 90.02478 * 7 6 4 9 9 N 1.34777 * 120.00222 * 270.02978 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27565 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 H 1.08995 * 109.47266 * 59.99845 * 13 10 9 15 15 C 1.53004 * 109.46947 * 299.99341 * 13 10 9 16 16 N 1.46507 * 109.47137 * 179.97438 * 13 10 9 17 17 C 1.36936 * 120.00163 * 205.00109 * 16 13 10 18 18 H 1.08002 * 119.99631 * 359.97438 * 17 16 13 19 19 C 1.38806 * 120.00202 * 179.97438 * 17 16 13 20 20 N 1.31624 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46920 * 60.00045 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47150 * 300.00017 * 21 19 17 25 25 C 1.34179 * 125.44040 * 180.29689 * 2 1 3 26 26 C 1.50700 * 127.01970 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47317 * 359.97050 * 1 2 3 28 28 H 1.09000 * 109.47102 * 119.97512 * 1 2 3 29 29 H 1.09000 * 109.47033 * 239.97429 * 1 2 3 30 30 H 1.08998 * 109.47000 * 270.00663 * 5 4 3 31 31 H 1.09005 * 109.46685 * 30.00124 * 5 4 3 32 32 H 1.08992 * 109.47718 * 150.00403 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 35 35 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 36 36 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 37 37 H 1.08994 * 109.47427 * 299.99790 * 15 13 10 38 38 H 1.08999 * 109.46966 * 60.00966 * 15 13 10 39 39 H 1.09010 * 109.46876 * 179.97438 * 15 13 10 40 40 H 0.97000 * 119.99602 * 24.99287 * 16 13 10 41 41 H 0.96995 * 120.00144 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47223 * 270.13435 * 26 25 2 43 43 H 1.08996 * 109.47522 * 30.14068 * 26 25 2 44 44 H 1.09005 * 109.46483 * 150.14278 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2851 1.0936 0.0000 4 6 3.5789 0.7584 0.0006 5 6 4.7389 1.7203 0.0002 6 6 3.6710 -0.6027 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4103 -1.7469 1.0535 9 7 5.4660 -1.7819 -1.1669 10 6 6.6867 -2.5918 -1.1669 11 1 6.6645 -3.2826 -0.3240 12 6 7.9062 -1.6762 -1.0438 13 6 6.7734 -3.3837 -2.4732 14 1 6.7956 -2.6929 -3.3160 15 6 5.5538 -4.2995 -2.5962 16 7 7.9945 -4.1932 -2.4735 17 6 8.5637 -4.5733 -3.6595 18 1 8.1122 -4.2766 -4.5947 19 6 9.7210 -5.3398 -3.6598 20 7 10.2715 -5.7009 -2.5200 21 14 10.4971 -5.8589 -5.2777 22 1 10.8663 -4.6514 -6.0594 23 1 11.7151 -6.6640 -5.0066 24 1 9.5273 -6.6731 -6.0531 25 6 2.2850 -1.0932 -0.0057 26 6 1.8309 -2.5301 -0.0136 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5134 -0.8902 29 1 -0.3633 -0.5142 0.8898 30 1 5.0188 1.9516 -1.0276 31 1 4.4503 2.6377 0.5134 32 1 5.5866 1.2676 0.5144 33 1 5.0608 -1.5153 -2.0069 34 1 8.8146 -2.2787 -1.0442 35 1 7.9285 -0.9853 -1.8867 36 1 7.8445 -1.1120 -0.1132 37 1 5.5317 -4.9903 -1.7534 38 1 4.6456 -3.6969 -2.5963 39 1 5.6153 -4.8633 -3.5271 40 1 8.3998 -4.4598 -1.6335 41 1 11.0803 -6.2362 -2.5202 42 1 1.7187 -2.8814 1.0121 43 1 0.8742 -2.6060 -0.5304 44 1 2.5715 -3.1423 -0.5284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = -50.409160 kcal Electronic energy + Delta-G solvation = -24038.286574 eV Core-core repulsion = 20570.207319 eV Total energy + Delta-G solvation = -3468.079255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.59722 -40.79527 -38.26469 -35.60553 -35.23408 -34.16285 -33.38152 -31.08964 -30.54898 -30.15867 -29.01992 -25.92923 -25.82216 -24.79664 -23.44458 -21.58588 -21.15504 -20.21574 -19.35258 -18.25977 -17.56008 -17.12701 -16.75017 -16.51538 -15.91780 -15.44610 -15.34879 -14.98794 -14.79819 -14.45604 -14.38881 -14.27370 -14.09348 -13.86423 -13.66218 -13.47917 -13.46120 -13.34240 -13.20271 -13.02216 -12.92878 -12.71119 -12.60634 -12.28393 -12.21525 -12.18949 -11.74887 -11.51165 -11.19518 -10.96912 -10.44326 -10.17877 -9.25269 -9.01753 -7.91281 -5.20673 0.58690 1.18013 1.43092 1.49592 1.52130 1.58024 1.76704 2.18829 2.60385 3.42544 3.49082 3.66824 3.80782 3.90894 4.01651 4.11899 4.18338 4.32797 4.35246 4.39375 4.56808 4.57643 4.66907 4.68366 4.75716 4.79292 4.86010 4.87045 4.89104 4.93275 4.98628 5.03683 5.07337 5.14974 5.21943 5.30021 5.46916 5.49243 5.53893 5.56917 6.10033 6.29053 6.48366 7.15073 7.35665 8.08261 8.32309 9.32017 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.003258 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.325096 B = 8592.819813 C = 8994.287297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.013 4.013 3 O -0.177 6.177 4 C 0.042 3.958 5 C -0.080 4.080 6 C -0.253 4.253 7 C 0.598 3.402 8 O -0.579 6.579 9 N -0.692 5.692 10 C 0.149 3.851 11 H 0.059 0.941 12 C -0.143 4.143 13 C 0.169 3.831 14 H 0.062 0.938 15 C -0.154 4.154 16 N -0.729 5.729 17 C -0.235 4.235 18 H 0.080 0.920 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.300 1.300 24 H -0.279 1.279 25 C -0.168 4.168 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 15.665 2.522 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 O -0.074 6.074 4 C -0.010 4.010 5 C -0.136 4.136 6 C -0.257 4.257 7 C 0.384 3.616 8 O -0.459 6.459 9 N -0.342 5.342 10 C 0.043 3.957 11 H 0.077 0.923 12 C -0.201 4.201 13 C 0.060 3.940 14 H 0.080 0.920 15 C -0.214 4.214 16 N -0.370 5.370 17 C -0.366 4.366 18 H 0.098 0.902 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.227 1.227 24 H -0.205 1.205 25 C -0.170 4.170 26 C -0.139 4.139 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.249 0.751 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.004 15.689 3.055 26.394 hybrid contribution 1.084 -0.933 -0.536 1.527 sum -19.920 14.756 2.518 24.918 Atomic orbital electron populations 1.20516 0.81716 1.05253 1.05103 1.22693 0.95289 0.82373 1.05736 1.83679 1.15903 1.35734 1.72077 1.22875 0.83968 0.93243 1.00884 1.20561 0.90318 0.97269 1.05442 1.21038 0.93838 0.93942 1.16898 1.17534 0.82372 0.78308 0.83344 1.90781 1.65115 1.57048 1.32992 1.45854 1.26875 1.52959 1.08560 1.20982 0.83982 0.92190 0.98509 0.92316 1.21927 0.97405 0.99467 1.01287 1.20536 0.86940 0.91945 0.94537 0.92028 1.22296 0.98362 1.00035 1.00696 1.42453 1.27462 1.61694 1.05381 1.19552 1.04914 1.25220 0.86958 0.90189 1.25532 0.99453 1.02001 0.99738 1.69823 1.22714 1.43500 1.26076 0.85241 0.77338 0.77867 0.79475 1.20251 1.22661 1.20486 1.21313 0.89541 0.97709 1.08428 1.20221 1.02212 0.88954 1.02523 0.89343 0.87783 0.88364 0.87441 0.87949 0.90202 0.75085 0.92757 0.91423 0.93197 0.94850 0.91220 0.93639 0.79625 0.94150 0.91372 0.88398 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 9.94 71.24 0.71 0.05 16 2 C -0.01 -0.24 7.28 24.76 0.18 -0.06 16 3 O -0.18 -3.78 10.52 4.48 0.05 -3.73 16 4 C 0.04 0.95 7.37 25.26 0.19 1.14 16 5 C -0.08 -1.32 10.24 71.24 0.73 -0.59 16 6 C -0.25 -6.78 6.07 -18.99 -0.12 -6.89 16 7 C 0.60 19.04 7.22 86.65 0.63 19.66 16 8 O -0.58 -23.60 16.77 -4.07 -0.07 -23.67 16 9 N -0.69 -19.72 4.38 -445.85 -1.95 -21.68 16 10 C 0.15 5.20 2.21 44.99 0.10 5.30 16 11 H 0.06 2.41 7.57 -2.39 -0.02 2.39 16 12 C -0.14 -4.98 9.33 71.98 0.67 -4.30 16 13 C 0.17 6.40 2.52 44.99 0.11 6.51 16 14 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 15 C -0.15 -5.33 9.34 71.98 0.67 -4.66 16 16 N -0.73 -35.81 4.43 -322.93 -1.43 -37.24 16 17 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 20 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 21 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.17 -3.85 6.38 -18.49 -0.12 -3.97 16 26 C -0.08 -1.59 10.15 71.24 0.72 -0.87 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 33 H 0.41 9.55 8.37 -92.71 -0.78 8.77 16 34 H 0.05 2.20 7.44 -2.39 -0.02 2.18 16 35 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 39 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.37 20.16 7.58 -92.71 -0.70 19.46 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.26 7.90 -2.39 -0.02 1.24 16 44 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -71.98 371.52 4.21 -67.77 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.48 Total: 34.21 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.78 Total: -4.22 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -3.10 Total: -117.93 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.02 Total: -27.40 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.98 4.21 -67.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds