Wall clock time and date at job start Tue Mar 31 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34217 * 125.43521 * 2 1 4 4 C 1.33650 * 110.90549 * 179.72093 * 3 2 1 5 5 C 1.50706 * 125.80000 * 180.28488 * 4 3 2 6 6 C 1.36414 * 108.39888 * 0.45228 * 4 3 2 7 7 C 1.47376 * 127.19188 * 179.83238 * 6 4 3 8 8 O 1.21615 * 120.00209 * 269.68550 * 7 6 4 9 9 N 1.34777 * 119.99945 * 89.68216 * 7 6 4 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46950 * 325.00285 * 10 9 7 12 12 C 1.52995 * 109.46824 * 85.00531 * 10 9 7 13 13 C 1.53000 * 109.46808 * 205.00186 * 10 9 7 14 14 H 1.08999 * 109.47446 * 299.99795 * 13 10 9 15 15 C 1.52995 * 109.47146 * 60.00543 * 13 10 9 16 16 N 1.46506 * 109.46646 * 180.02562 * 13 10 9 17 17 C 1.36938 * 119.99597 * 155.00491 * 16 13 10 18 18 H 1.07999 * 120.00321 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99825 * 179.97438 * 17 16 13 20 20 N 1.31625 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46983 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47256 * 209.99884 * 21 19 17 24 24 H 1.48499 * 109.47218 * 329.99890 * 21 19 17 25 25 C 1.34177 * 125.44032 * 179.97438 * 2 1 3 26 26 C 1.50696 * 127.02322 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47116 * 269.99655 * 1 2 3 28 28 H 1.08999 * 109.47269 * 29.99981 * 1 2 3 29 29 H 1.09004 * 109.46656 * 149.99899 * 1 2 3 30 30 H 1.09000 * 109.47251 * 270.19547 * 5 4 3 31 31 H 1.09000 * 109.46600 * 30.19276 * 5 4 3 32 32 H 1.08995 * 109.47045 * 150.19065 * 5 4 3 33 33 H 0.96995 * 120.00018 * 0.27670 * 9 7 6 34 34 H 1.09002 * 109.46959 * 179.97438 * 12 10 9 35 35 H 1.09003 * 109.47335 * 299.99547 * 12 10 9 36 36 H 1.09002 * 109.47311 * 59.99668 * 12 10 9 37 37 H 1.09002 * 109.46959 * 299.99493 * 15 13 10 38 38 H 1.09002 * 109.47311 * 59.99779 * 15 13 10 39 39 H 1.09003 * 109.47335 * 179.97438 * 15 13 10 40 40 H 0.96999 * 120.00076 * 334.99384 * 16 13 10 41 41 H 0.97000 * 119.99486 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47547 * 269.97792 * 26 25 2 43 43 H 1.09002 * 109.47103 * 29.97895 * 26 25 2 44 44 H 1.08999 * 109.47355 * 149.97280 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5790 0.7583 0.0061 5 6 4.7390 1.7203 0.0140 6 6 3.6710 -0.6027 0.0001 7 6 4.9025 -1.4123 0.0001 8 8 5.4107 -1.7464 -1.0531 9 7 5.4656 -1.7825 1.1673 10 6 6.6895 -2.5878 1.1672 11 1 6.6689 -3.2800 0.3255 12 6 7.9053 -1.6676 1.0413 13 6 6.7806 -3.3771 2.4747 14 1 6.8012 -2.6849 3.3164 15 6 5.5648 -4.2973 2.6007 16 7 8.0048 -4.1819 2.4749 17 6 8.5767 -4.5579 3.6610 18 1 8.1256 -4.2609 4.5962 19 6 9.7364 -5.3209 3.6612 20 7 10.2859 -5.6834 2.5214 21 14 10.5170 -5.8333 5.2791 22 1 9.9543 -7.1386 5.7087 23 1 11.9857 -5.9618 5.1013 24 1 10.2316 -4.8067 6.3134 25 6 2.2851 -1.0932 0.0005 26 6 1.8310 -2.5301 0.0006 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 5.0218 1.9570 -1.0117 31 1 4.4488 2.6349 0.5312 32 1 5.5851 1.2649 0.5284 33 1 5.0582 -1.5195 2.0073 34 1 8.8160 -2.2667 1.0417 35 1 7.8405 -1.1052 0.1098 36 1 7.9259 -0.9753 1.8830 37 1 4.6542 -3.6982 2.6007 38 1 5.5443 -4.9896 1.7590 39 1 5.6299 -4.8600 3.5320 40 1 8.4101 -4.4485 1.6350 41 1 11.0960 -6.2168 2.5216 42 1 1.7215 -2.8765 1.0283 43 1 0.8729 -2.6084 -0.5133 44 1 2.5701 -3.1448 -0.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755243215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:50 Heat of formation + Delta-G solvation = -29.324257 kcal Electronic energy + Delta-G solvation = -24036.711188 eV Core-core repulsion = 20569.546242 eV Total energy + Delta-G solvation = -3467.164945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71263 -39.44408 -36.68195 -34.41579 -33.89488 -33.20601 -31.64274 -29.99117 -29.52875 -28.42608 -28.11081 -24.91559 -24.00589 -23.66611 -22.04518 -20.15869 -19.96824 -19.16214 -17.46694 -17.14580 -16.61571 -15.90296 -15.49156 -14.82707 -14.60595 -14.14703 -13.91519 -13.72958 -13.62612 -13.45044 -13.20155 -13.13236 -13.05658 -12.91145 -12.86544 -12.53763 -12.42141 -12.35341 -11.85521 -11.70760 -11.39054 -11.17158 -10.95213 -10.84755 -10.68393 -10.22300 -9.99843 -9.85991 -9.65304 -9.46336 -9.01674 -8.74800 -8.42879 -6.99649 -5.78261 -3.07871 1.47101 2.08719 2.59212 2.68479 3.41357 3.43096 3.48846 3.49446 4.28492 4.58090 4.68583 4.70813 4.90689 5.01937 5.11293 5.14282 5.23565 5.30780 5.35980 5.48265 5.50025 5.55273 5.59141 5.68331 5.74057 5.76304 5.80179 5.89964 6.02693 6.10855 6.22611 6.31628 6.39894 6.42904 6.53728 6.62996 6.80914 6.95238 6.96729 7.03299 7.67735 7.71732 8.38104 8.40894 9.50767 10.06100 10.41331 11.44118 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.003256 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.555226 B = 8597.745415 C = 8994.608787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 O -0.174 6.174 4 C 0.038 3.962 5 C -0.078 4.078 6 C -0.221 4.221 7 C 0.590 3.410 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.134 3.866 11 H 0.085 0.915 12 C -0.152 4.152 13 C 0.169 3.831 14 H 0.050 0.950 15 C -0.164 4.164 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.144 4.144 26 C -0.086 4.086 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 13.976 -3.955 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 O -0.071 6.071 4 C -0.013 4.013 5 C -0.134 4.134 6 C -0.225 4.225 7 C 0.375 3.625 8 O -0.411 6.411 9 N -0.358 5.358 10 C 0.030 3.970 11 H 0.103 0.897 12 C -0.211 4.211 13 C 0.059 3.941 14 H 0.068 0.932 15 C -0.224 4.224 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.610 13.974 -4.534 23.710 hybrid contribution 0.460 -0.513 1.007 1.220 sum -18.150 13.461 -3.527 22.871 Atomic orbital electron populations 1.20296 0.84847 1.03990 1.03509 1.21942 0.93697 0.83283 1.07854 1.83635 1.15990 1.35195 1.72306 1.22457 0.83172 0.93383 1.02303 1.20428 0.91650 0.97133 1.04233 1.21097 0.94111 0.93162 1.14146 1.17256 0.82154 0.79013 0.84088 1.90806 1.63597 1.55254 1.31409 1.46098 1.27722 1.54022 1.07933 1.21383 0.82620 0.92505 1.00499 0.89676 1.22054 0.98825 0.99756 1.00433 1.20381 0.88299 0.92044 0.93409 0.93181 1.22443 0.97713 1.00340 1.01932 1.42294 1.25681 1.61373 1.06654 1.19188 1.05166 1.26762 0.85860 0.91170 1.24740 0.98342 1.00963 0.96753 1.69667 1.22211 1.42100 1.23891 0.86200 0.78550 0.78434 0.83036 1.21763 1.21791 1.20785 1.21059 0.90131 0.96444 1.06964 1.20220 1.01362 0.90187 1.02467 0.90057 0.90599 0.89324 0.89413 0.89956 0.88974 0.76768 0.90015 0.93457 0.93046 0.94559 0.93416 0.92656 0.78038 0.93449 0.90935 0.91318 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.21 36.01 0.37 -0.08 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 O -0.17 -2.05 10.52 7.66 0.08 -1.97 16 4 C 0.04 0.46 7.37 -34.96 -0.26 0.21 16 5 C -0.08 -0.71 10.24 36.01 0.37 -0.35 16 6 C -0.22 -3.05 6.07 -103.28 -0.63 -3.68 16 7 C 0.59 9.41 7.22 -12.54 -0.09 9.32 16 8 O -0.53 -10.60 16.77 5.26 0.09 -10.51 16 9 N -0.71 -10.34 4.39 -54.90 -0.24 -10.58 16 10 C 0.13 2.34 2.21 -67.93 -0.15 2.19 16 11 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 12 C -0.15 -2.64 9.33 37.16 0.35 -2.29 16 13 C 0.17 3.24 2.52 -67.93 -0.17 3.07 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.92 9.33 37.16 0.35 -2.57 16 16 N -0.72 -17.42 4.43 -53.42 -0.24 -17.65 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C -0.14 -1.76 6.37 -102.50 -0.65 -2.41 16 26 C -0.09 -0.89 10.15 36.00 0.37 -0.52 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.46 7.14 -51.93 -0.37 0.08 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.86 7.93 -51.93 -0.41 0.44 16 33 H 0.40 4.98 8.36 -40.82 -0.34 4.63 16 34 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.53 7.44 -51.93 -0.39 0.15 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 10.09 7.58 -40.82 -0.31 9.78 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.55 7.15 -51.93 -0.37 0.17 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -32.76 370.02 -6.86 -39.62 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.16 Total: 10.08 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.66 Total: -4.59 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.25 Total: -55.26 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.17 Total: -12.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.76 -6.86 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.293 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds