Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34217 * 125.43521 * 2 1 4 4 C 1.33650 * 110.90549 * 179.72093 * 3 2 1 5 5 C 1.50706 * 125.80000 * 180.28488 * 4 3 2 6 6 C 1.36414 * 108.39888 * 0.45228 * 4 3 2 7 7 C 1.47376 * 127.19188 * 179.83238 * 6 4 3 8 8 O 1.21615 * 120.00209 * 269.68550 * 7 6 4 9 9 N 1.34777 * 119.99945 * 89.68216 * 7 6 4 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46950 * 325.00285 * 10 9 7 12 12 C 1.52995 * 109.46824 * 85.00531 * 10 9 7 13 13 C 1.53000 * 109.46808 * 205.00186 * 10 9 7 14 14 H 1.08999 * 109.47446 * 299.99795 * 13 10 9 15 15 C 1.52995 * 109.47146 * 60.00543 * 13 10 9 16 16 N 1.46506 * 109.46646 * 180.02562 * 13 10 9 17 17 C 1.36938 * 119.99597 * 155.00491 * 16 13 10 18 18 H 1.07999 * 120.00321 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99825 * 179.97438 * 17 16 13 20 20 N 1.31625 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46983 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47256 * 209.99884 * 21 19 17 24 24 H 1.48499 * 109.47218 * 329.99890 * 21 19 17 25 25 C 1.34177 * 125.44032 * 179.97438 * 2 1 3 26 26 C 1.50696 * 127.02322 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47116 * 269.99655 * 1 2 3 28 28 H 1.08999 * 109.47269 * 29.99981 * 1 2 3 29 29 H 1.09004 * 109.46656 * 149.99899 * 1 2 3 30 30 H 1.09000 * 109.47251 * 270.19547 * 5 4 3 31 31 H 1.09000 * 109.46600 * 30.19276 * 5 4 3 32 32 H 1.08995 * 109.47045 * 150.19065 * 5 4 3 33 33 H 0.96995 * 120.00018 * 0.27670 * 9 7 6 34 34 H 1.09002 * 109.46959 * 179.97438 * 12 10 9 35 35 H 1.09003 * 109.47335 * 299.99547 * 12 10 9 36 36 H 1.09002 * 109.47311 * 59.99668 * 12 10 9 37 37 H 1.09002 * 109.46959 * 299.99493 * 15 13 10 38 38 H 1.09002 * 109.47311 * 59.99779 * 15 13 10 39 39 H 1.09003 * 109.47335 * 179.97438 * 15 13 10 40 40 H 0.96999 * 120.00076 * 334.99384 * 16 13 10 41 41 H 0.97000 * 119.99486 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47547 * 269.97792 * 26 25 2 43 43 H 1.09002 * 109.47103 * 29.97895 * 26 25 2 44 44 H 1.08999 * 109.47355 * 149.97280 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5790 0.7583 0.0061 5 6 4.7390 1.7203 0.0140 6 6 3.6710 -0.6027 0.0001 7 6 4.9025 -1.4123 0.0001 8 8 5.4107 -1.7464 -1.0531 9 7 5.4656 -1.7825 1.1673 10 6 6.6895 -2.5878 1.1672 11 1 6.6689 -3.2800 0.3255 12 6 7.9053 -1.6676 1.0413 13 6 6.7806 -3.3771 2.4747 14 1 6.8012 -2.6849 3.3164 15 6 5.5648 -4.2973 2.6007 16 7 8.0048 -4.1819 2.4749 17 6 8.5767 -4.5579 3.6610 18 1 8.1256 -4.2609 4.5962 19 6 9.7364 -5.3209 3.6612 20 7 10.2859 -5.6834 2.5214 21 14 10.5170 -5.8333 5.2791 22 1 9.9543 -7.1386 5.7087 23 1 11.9857 -5.9618 5.1013 24 1 10.2316 -4.8067 6.3134 25 6 2.2851 -1.0932 0.0005 26 6 1.8310 -2.5301 0.0006 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 5.0218 1.9570 -1.0117 31 1 4.4488 2.6349 0.5312 32 1 5.5851 1.2649 0.5284 33 1 5.0582 -1.5195 2.0073 34 1 8.8160 -2.2667 1.0417 35 1 7.8405 -1.1052 0.1098 36 1 7.9259 -0.9753 1.8830 37 1 4.6542 -3.6982 2.6007 38 1 5.5443 -4.9896 1.7590 39 1 5.6299 -4.8600 3.5320 40 1 8.4101 -4.4485 1.6350 41 1 11.0960 -6.2168 2.5216 42 1 1.7215 -2.8765 1.0283 43 1 0.8729 -2.6084 -0.5133 44 1 2.5701 -3.1448 -0.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = -50.294515 kcal Electronic energy + Delta-G solvation = -24037.620526 eV Core-core repulsion = 20569.546242 eV Total energy + Delta-G solvation = -3468.074284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.59950 -40.79672 -38.26578 -35.60698 -35.24967 -34.17324 -33.37638 -31.08882 -30.54273 -30.15783 -29.02317 -25.93315 -25.82565 -24.80688 -23.44357 -21.58560 -21.15180 -20.21347 -19.35431 -18.26037 -17.56407 -17.13287 -16.75189 -16.51480 -15.92826 -15.45110 -15.34370 -14.99868 -14.81158 -14.51975 -14.36071 -14.27452 -14.09616 -13.87922 -13.67177 -13.50251 -13.46526 -13.30470 -13.18791 -12.95393 -12.92502 -12.75351 -12.60719 -12.28968 -12.22578 -12.14428 -11.74915 -11.50905 -11.19733 -10.98305 -10.44442 -10.17963 -9.25809 -9.01848 -7.91564 -5.20833 0.58341 1.18199 1.43015 1.49616 1.50787 1.59010 1.76372 2.18629 2.60189 3.42503 3.48706 3.66572 3.80573 3.90650 4.01293 4.11786 4.18250 4.32026 4.34498 4.40562 4.55079 4.57415 4.65299 4.68574 4.75641 4.80487 4.83997 4.86601 4.90826 4.93641 4.99349 5.04072 5.06900 5.15077 5.21061 5.30020 5.46897 5.49555 5.53952 5.57046 6.09876 6.28965 6.48201 7.14957 7.35551 8.08092 8.32086 9.31939 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.003256 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.555226 B = 8597.745415 C = 8994.608787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.013 4.013 3 O -0.177 6.177 4 C 0.042 3.958 5 C -0.080 4.080 6 C -0.253 4.253 7 C 0.598 3.402 8 O -0.579 6.579 9 N -0.692 5.692 10 C 0.149 3.851 11 H 0.058 0.942 12 C -0.143 4.143 13 C 0.169 3.831 14 H 0.062 0.938 15 C -0.154 4.154 16 N -0.730 5.730 17 C -0.233 4.233 18 H 0.081 0.919 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.971 3.029 22 H -0.290 1.290 23 H -0.299 1.299 24 H -0.267 1.267 25 C -0.168 4.168 26 C -0.083 4.083 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.413 0.587 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 15.650 -2.541 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 O -0.074 6.074 4 C -0.010 4.010 5 C -0.136 4.136 6 C -0.257 4.257 7 C 0.384 3.616 8 O -0.459 6.459 9 N -0.343 5.343 10 C 0.043 3.957 11 H 0.077 0.923 12 C -0.201 4.201 13 C 0.060 3.940 14 H 0.080 0.920 15 C -0.214 4.214 16 N -0.370 5.370 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.191 1.191 25 C -0.169 4.169 26 C -0.139 4.139 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.249 0.751 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.084 15.687 -3.071 26.459 hybrid contribution 1.092 -0.953 0.534 1.545 sum -19.992 14.734 -2.537 24.964 Atomic orbital electron populations 1.20529 0.81728 1.05352 1.05031 1.22683 0.95285 0.82387 1.05759 1.83672 1.15897 1.35730 1.72116 1.22877 0.83967 0.93237 1.00871 1.20562 0.90551 0.97580 1.04898 1.21034 0.93847 0.93933 1.16892 1.17532 0.82365 0.78317 0.83345 1.90782 1.65034 1.57090 1.33001 1.45858 1.26671 1.53200 1.08556 1.20983 0.83911 0.92259 0.98504 0.92337 1.21931 0.97444 0.99460 1.01291 1.20537 0.86904 0.92003 0.94521 0.92013 1.22295 0.98379 1.00019 1.00702 1.42464 1.27161 1.61987 1.05395 1.19588 1.04676 1.25257 0.86954 0.90162 1.25533 0.99466 1.02055 0.99725 1.69833 1.22670 1.43593 1.26015 0.85171 0.76909 0.78164 0.79695 1.21753 1.22634 1.19125 1.21316 0.89544 0.97713 1.08376 1.20239 1.01742 0.88862 1.03090 0.88301 0.89391 0.87805 0.88896 0.87442 0.89287 0.75078 0.92740 0.93181 0.91405 0.91183 0.94873 0.93620 0.79623 0.94169 0.89950 0.88820 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.21 71.24 0.73 0.07 16 2 C -0.01 -0.24 7.28 24.76 0.18 -0.06 16 3 O -0.18 -3.79 10.52 4.48 0.05 -3.74 16 4 C 0.04 0.96 7.37 25.26 0.19 1.15 16 5 C -0.08 -1.32 10.24 71.24 0.73 -0.59 16 6 C -0.25 -6.77 6.07 -18.99 -0.12 -6.89 16 7 C 0.60 19.02 7.22 86.65 0.63 19.65 16 8 O -0.58 -23.60 16.77 -4.08 -0.07 -23.67 16 9 N -0.69 -19.70 4.39 -445.84 -1.96 -21.65 16 10 C 0.15 5.20 2.21 44.99 0.10 5.29 16 11 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 12 C -0.14 -4.98 9.33 71.98 0.67 -4.31 16 13 C 0.17 6.38 2.52 44.99 0.11 6.50 16 14 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 15 C -0.15 -5.32 9.33 71.98 0.67 -4.65 16 16 N -0.73 -35.78 4.43 -322.93 -1.43 -37.21 16 17 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -59.28 13.06 21.65 0.28 -58.99 16 21 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.17 -3.83 6.37 -18.49 -0.12 -3.95 16 26 C -0.08 -1.59 10.15 71.23 0.72 -0.87 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.68 7.14 -2.39 -0.02 0.67 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.53 7.93 -2.39 -0.02 1.51 16 33 H 0.41 9.52 8.36 -92.71 -0.77 8.75 16 34 H 0.05 2.20 7.44 -2.39 -0.02 2.19 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.93 7.44 -2.39 -0.02 1.91 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.37 20.14 7.58 -92.71 -0.70 19.44 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.26 7.15 -2.39 -0.02 1.25 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -72.05 370.02 4.23 -67.83 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.47 Total: 33.98 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.79 Total: -4.13 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -3.10 Total: -117.85 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.02 Total: -27.40 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.05 4.23 -67.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.531 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds