Wall clock time and date at job start Tue Mar 31 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99751 * 2 1 4 4 C 1.53001 * 109.46747 * 125.00502 * 3 2 1 5 5 O 1.42901 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00249 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47222 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00117 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99976 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99639 * 179.97438 * 9 7 6 11 11 C 1.50712 * 109.46716 * 179.97438 * 10 9 7 12 12 C 1.29454 * 117.69203 * 94.99943 * 11 10 9 13 13 C 1.50323 * 123.64590 * 181.13493 * 12 11 10 14 14 N 1.47102 * 109.11127 * 348.54347 * 13 12 11 15 15 C 1.36940 * 121.51360 * 223.15765 * 14 13 12 16 16 H 1.08004 * 119.99962 * 156.19051 * 15 14 13 17 17 C 1.38811 * 119.99874 * 336.18990 * 15 14 13 18 18 N 1.31620 * 119.99972 * 344.47015 * 17 15 14 19 19 Si 1.86793 * 120.00126 * 164.47761 * 17 15 14 20 20 H 1.48510 * 109.47011 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47588 * 119.99663 * 19 17 15 22 22 H 1.48502 * 109.47132 * 240.00287 * 19 17 15 23 23 C 1.47346 * 117.11188 * 43.34401 * 14 13 12 24 24 C 1.49973 * 117.69226 * 274.97982 * 11 10 9 25 25 H 1.08006 * 119.99650 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00213 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00213 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47014 * 5.00377 * 3 2 1 29 29 H 1.09005 * 109.47061 * 245.00112 * 3 2 1 30 30 H 1.08994 * 109.47466 * 60.00151 * 4 3 2 31 31 H 1.09001 * 109.47508 * 299.99665 * 4 3 2 32 32 H 1.08998 * 109.47275 * 60.00296 * 6 5 4 33 33 H 1.09002 * 109.47137 * 299.99813 * 6 5 4 34 34 H 0.96998 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47315 * 60.00703 * 10 9 7 36 36 H 1.08994 * 109.47482 * 299.99839 * 10 9 7 37 37 H 1.07997 * 118.17373 * 0.86395 * 12 11 10 38 38 H 1.09007 * 109.51511 * 108.65398 * 13 12 11 39 39 H 1.08999 * 109.52217 * 228.83518 * 13 12 11 40 40 H 0.97000 * 119.99856 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.77792 * 178.43066 * 23 14 13 42 42 H 1.08997 * 109.77697 * 57.62702 * 23 14 13 43 43 H 1.09000 * 109.31396 * 281.28816 * 24 11 10 44 44 H 1.08999 * 109.31466 * 40.71906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7491 2.5708 1.1820 6 6 4.6877 2.7000 2.2517 7 6 5.3789 4.0357 2.1549 8 8 5.0958 4.8014 1.2580 9 7 6.3123 4.3789 3.0646 10 6 6.9845 5.6772 2.9702 11 6 7.9744 5.8135 4.0984 12 6 9.2055 5.4913 3.8608 13 6 10.2964 5.5518 4.8932 14 7 9.8020 6.2759 6.0744 15 6 10.5730 7.2068 6.7179 16 1 10.1049 7.9815 7.3072 17 6 11.9562 7.1548 6.6129 18 7 12.5416 6.0643 6.1653 19 14 12.9866 8.6325 7.1068 20 1 12.0946 9.7243 7.5733 21 1 13.9121 8.2468 8.2023 22 1 13.7721 9.1015 5.9371 23 6 8.4414 5.9532 6.5389 24 6 7.4638 6.3132 5.4170 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4773 1.2355 2.1130 32 1 5.4273 1.9022 2.1844 33 1 4.1640 2.6306 3.2051 34 1 6.5389 3.7664 3.7817 35 1 6.2450 6.4751 3.0379 36 1 7.5079 5.7469 2.0167 37 1 9.4621 5.1563 2.8667 38 1 10.5861 4.5399 5.1767 39 1 11.1586 6.0767 4.4818 40 1 13.5081 6.0281 6.0915 41 1 8.2089 6.5343 7.4313 42 1 8.3707 4.8888 6.7624 43 1 7.3494 7.3962 5.3723 44 1 6.4947 5.8593 5.6238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755899805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:39 Heat of formation + Delta-G solvation = -28.338338 kcal Electronic energy + Delta-G solvation = -22624.055910 eV Core-core repulsion = 19156.933717 eV Total energy + Delta-G solvation = -3467.122193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83548 -38.23474 -37.59389 -35.35801 -34.90848 -32.94630 -31.06033 -30.22736 -29.75000 -28.17855 -26.30303 -24.01935 -23.32811 -22.75988 -21.17298 -20.69191 -20.16139 -17.81185 -17.38052 -17.07797 -16.76177 -15.72967 -15.66076 -15.52740 -15.10448 -14.89923 -14.37608 -13.93942 -13.92069 -13.60207 -13.50918 -13.23858 -13.03006 -12.66344 -12.28354 -12.06684 -11.86605 -11.60717 -11.55711 -11.47383 -11.38106 -10.94935 -10.77849 -10.43393 -10.31605 -10.01346 -9.88433 -9.86247 -9.77617 -9.62025 -9.00527 -8.72199 -8.10238 -6.79251 -5.83733 -3.22461 1.80554 2.43284 2.59533 3.06459 3.35626 3.43600 3.45558 3.87588 4.46351 4.53843 4.63888 4.68905 4.81166 4.86983 4.95781 4.98327 5.05293 5.12229 5.32120 5.36645 5.42573 5.53982 5.56091 5.64362 5.79577 5.91454 6.03073 6.13035 6.19335 6.29466 6.31705 6.40233 6.48946 6.69131 6.76201 6.82571 7.12013 7.21514 7.28203 7.53965 7.69310 7.78488 8.21971 8.33826 9.15356 9.78055 10.35994 11.26820 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.050534 B = 0.002103 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.947581 B =13310.135693 C =13326.609058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.045 3.955 7 C 0.510 3.490 8 O -0.526 6.526 9 N -0.720 5.720 10 C 0.159 3.841 11 C -0.167 4.167 12 C -0.123 4.123 13 C 0.193 3.807 14 N -0.595 5.595 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.143 3.857 24 C -0.090 4.090 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.402 0.598 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.351 -11.928 -7.962 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.283 6.283 6 C -0.035 4.035 7 C 0.294 3.706 8 O -0.402 6.402 9 N -0.373 5.373 10 C 0.037 3.963 11 C -0.168 4.168 12 C -0.144 4.144 13 C 0.068 3.932 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.017 3.983 24 C -0.129 4.129 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.410 -11.211 -8.767 23.270 hybrid contribution 0.804 0.105 0.705 1.074 sum -17.607 -11.105 -8.062 22.323 Atomic orbital electron populations 1.23918 0.95902 1.02101 1.00543 1.22804 0.96026 0.97977 1.00412 1.20644 0.97952 0.95924 0.98571 1.22498 0.94027 0.86103 0.98586 1.87994 1.54396 1.37379 1.48495 1.22205 0.93187 0.96158 0.91939 1.20229 0.79973 0.88103 0.82254 1.90725 1.63330 1.52423 1.33674 1.46086 1.40361 1.20320 1.30515 1.20462 0.94314 0.83980 0.97553 1.20496 0.94382 1.06133 0.95777 1.23298 0.96047 0.95123 0.99892 1.19789 0.92699 0.96323 0.84407 1.44164 1.12081 1.46175 1.29401 1.19231 0.87742 1.03840 1.26660 0.91259 1.24988 0.96862 0.97058 1.01034 1.70012 1.08979 1.25256 1.51279 0.86178 0.80248 0.82364 0.77736 1.20284 1.21740 1.21571 1.20958 0.85962 0.97231 0.94177 1.20756 0.98122 1.00365 0.93671 0.88282 0.88371 0.87141 0.90458 0.89893 0.92948 0.92988 0.90207 0.90245 0.76395 0.91514 0.91575 0.88741 0.94055 0.88811 0.93632 0.92431 0.95939 0.91711 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 14.32 29.02 0.42 -0.68 16 2 C -0.15 -0.97 9.52 -36.02 -0.34 -1.31 16 3 C -0.09 -0.72 6.03 -27.88 -0.17 -0.89 16 4 C 0.06 0.53 5.92 37.16 0.22 0.75 16 5 O -0.36 -4.34 9.88 -55.14 -0.54 -4.89 16 6 C 0.05 0.45 6.42 36.01 0.23 0.68 16 7 C 0.51 6.97 7.91 -10.99 -0.09 6.88 16 8 O -0.53 -9.63 16.50 -14.35 -0.24 -9.87 16 9 N -0.72 -9.01 5.55 -61.47 -0.34 -9.35 16 10 C 0.16 2.35 5.66 -5.19 -0.03 2.32 16 11 C -0.17 -2.78 5.22 -100.98 -0.53 -3.30 16 12 C -0.12 -2.26 9.47 -35.78 -0.34 -2.60 16 13 C 0.19 4.44 5.25 -5.05 -0.03 4.41 16 14 N -0.60 -14.50 3.01 -173.59 -0.52 -15.02 16 15 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16 16 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 17 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -25.80 11.07 55.49 0.61 -25.18 16 19 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.14 2.85 6.57 -3.53 -0.02 2.83 16 24 C -0.09 -1.51 5.95 -28.18 -0.17 -1.68 16 25 H 0.10 0.46 8.06 -52.48 -0.42 0.04 16 26 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 27 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 28 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 4.14 8.46 -40.82 -0.35 3.79 16 35 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 37 H 0.09 1.57 7.73 -52.49 -0.41 1.16 16 38 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.09 2.43 6.40 -51.93 -0.33 2.10 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -32.29 367.52 -8.94 -41.23 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.34 Total: 0.59 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.08 Total: 0.51 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.25 Total: -49.55 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.78 Total: -14.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.29 -8.94 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755899805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.889 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds