Wall clock time and date at job start Tue Mar 31 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99751 * 2 1 4 4 C 1.53001 * 109.46747 * 125.00502 * 3 2 1 5 5 O 1.42901 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00249 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47222 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00117 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99976 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99639 * 179.97438 * 9 7 6 11 11 C 1.50712 * 109.46716 * 179.97438 * 10 9 7 12 12 C 1.29454 * 117.69203 * 94.99943 * 11 10 9 13 13 C 1.50323 * 123.64590 * 181.13493 * 12 11 10 14 14 N 1.47102 * 109.11127 * 348.54347 * 13 12 11 15 15 C 1.36940 * 121.51360 * 223.15765 * 14 13 12 16 16 H 1.08004 * 119.99962 * 156.19051 * 15 14 13 17 17 C 1.38811 * 119.99874 * 336.18990 * 15 14 13 18 18 N 1.31620 * 119.99972 * 344.47015 * 17 15 14 19 19 Si 1.86793 * 120.00126 * 164.47761 * 17 15 14 20 20 H 1.48510 * 109.47011 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47588 * 119.99663 * 19 17 15 22 22 H 1.48502 * 109.47132 * 240.00287 * 19 17 15 23 23 C 1.47346 * 117.11188 * 43.34401 * 14 13 12 24 24 C 1.49973 * 117.69226 * 274.97982 * 11 10 9 25 25 H 1.08006 * 119.99650 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00213 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00213 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47014 * 5.00377 * 3 2 1 29 29 H 1.09005 * 109.47061 * 245.00112 * 3 2 1 30 30 H 1.08994 * 109.47466 * 60.00151 * 4 3 2 31 31 H 1.09001 * 109.47508 * 299.99665 * 4 3 2 32 32 H 1.08998 * 109.47275 * 60.00296 * 6 5 4 33 33 H 1.09002 * 109.47137 * 299.99813 * 6 5 4 34 34 H 0.96998 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47315 * 60.00703 * 10 9 7 36 36 H 1.08994 * 109.47482 * 299.99839 * 10 9 7 37 37 H 1.07997 * 118.17373 * 0.86395 * 12 11 10 38 38 H 1.09007 * 109.51511 * 108.65398 * 13 12 11 39 39 H 1.08999 * 109.52217 * 228.83518 * 13 12 11 40 40 H 0.97000 * 119.99856 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.77792 * 178.43066 * 23 14 13 42 42 H 1.08997 * 109.77697 * 57.62702 * 23 14 13 43 43 H 1.09000 * 109.31396 * 281.28816 * 24 11 10 44 44 H 1.08999 * 109.31466 * 40.71906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7491 2.5708 1.1820 6 6 4.6877 2.7000 2.2517 7 6 5.3789 4.0357 2.1549 8 8 5.0958 4.8014 1.2580 9 7 6.3123 4.3789 3.0646 10 6 6.9845 5.6772 2.9702 11 6 7.9744 5.8135 4.0984 12 6 9.2055 5.4913 3.8608 13 6 10.2964 5.5518 4.8932 14 7 9.8020 6.2759 6.0744 15 6 10.5730 7.2068 6.7179 16 1 10.1049 7.9815 7.3072 17 6 11.9562 7.1548 6.6129 18 7 12.5416 6.0643 6.1653 19 14 12.9866 8.6325 7.1068 20 1 12.0946 9.7243 7.5733 21 1 13.9121 8.2468 8.2023 22 1 13.7721 9.1015 5.9371 23 6 8.4414 5.9532 6.5389 24 6 7.4638 6.3132 5.4170 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4773 1.2355 2.1130 32 1 5.4273 1.9022 2.1844 33 1 4.1640 2.6306 3.2051 34 1 6.5389 3.7664 3.7817 35 1 6.2450 6.4751 3.0379 36 1 7.5079 5.7469 2.0167 37 1 9.4621 5.1563 2.8667 38 1 10.5861 4.5399 5.1767 39 1 11.1586 6.0767 4.4818 40 1 13.5081 6.0281 6.0915 41 1 8.2089 6.5343 7.4313 42 1 8.3707 4.8888 6.7624 43 1 7.3494 7.3962 5.3723 44 1 6.4947 5.8593 5.6238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755899805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:39 Heat of formation + Delta-G solvation = -48.361492 kcal Electronic energy + Delta-G solvation = -22624.924179 eV Core-core repulsion = 19156.933717 eV Total energy + Delta-G solvation = -3467.990462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90910 -39.45111 -38.70324 -36.41132 -35.85624 -34.55715 -32.70616 -31.46127 -30.86188 -29.26358 -27.70839 -25.59592 -24.35055 -23.91703 -22.83593 -21.71912 -20.68036 -19.50929 -18.55002 -17.91865 -17.50987 -17.26789 -16.97885 -16.55588 -16.31120 -15.90247 -15.69016 -15.29820 -15.26482 -15.06954 -14.57691 -14.23523 -14.15790 -13.90324 -13.64024 -13.35377 -13.26296 -12.91474 -12.81033 -12.61054 -12.50790 -12.20805 -12.13862 -12.07840 -11.97150 -11.70083 -11.27642 -10.96521 -10.69454 -10.68427 -10.26006 -10.13080 -9.65123 -8.75121 -7.88782 -5.29483 1.13053 1.36079 1.46187 1.48704 1.56769 1.58351 2.06712 2.51094 3.06427 3.28738 3.62526 3.75954 3.89435 3.96816 4.01575 4.16736 4.20389 4.28209 4.32871 4.44796 4.47136 4.50909 4.54181 4.65632 4.75005 4.84699 4.91311 4.92709 5.03830 5.10806 5.11428 5.22133 5.34053 5.41545 5.48827 5.61857 5.73937 5.77125 5.86207 6.09157 6.16532 6.34033 6.56316 7.13558 7.21249 7.83654 8.37219 9.19916 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.050534 B = 0.002103 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.947581 B =13310.135693 C =13326.609058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.095 4.095 4 C 0.062 3.938 5 O -0.400 6.400 6 C 0.048 3.952 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.708 5.708 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.203 3.797 14 N -0.615 5.615 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.138 3.862 24 C -0.084 4.084 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.017 0.983 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.062 0.938 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.271 -12.795 -7.613 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.132 4.132 4 C -0.013 4.013 5 O -0.319 6.319 6 C -0.031 4.031 7 C 0.295 3.705 8 O -0.458 6.458 9 N -0.361 5.361 10 C 0.045 3.955 11 C -0.139 4.139 12 C -0.161 4.161 13 C 0.078 3.922 14 N -0.339 5.339 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.013 3.987 24 C -0.123 4.123 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.253 0.747 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.360 -12.105 -8.386 25.128 hybrid contribution 1.298 0.353 0.626 1.484 sum -19.063 -11.752 -7.759 23.700 Atomic orbital electron populations 1.24083 0.95934 1.02723 0.99792 1.22827 0.96168 0.97710 1.01051 1.20643 0.97816 0.96455 0.98290 1.22662 0.94271 0.85251 0.99164 1.87951 1.55160 1.39313 1.49527 1.22306 0.93759 0.94178 0.92833 1.20952 0.79415 0.89036 0.81111 1.90706 1.65006 1.54311 1.35782 1.45892 1.39795 1.19622 1.30826 1.20213 0.93768 0.85311 0.96206 1.20589 0.93999 1.03159 0.96179 1.22955 0.95429 0.98146 0.99563 1.19437 0.93241 0.94302 0.85180 1.44445 1.13482 1.46059 1.29958 1.19550 0.88357 1.04371 1.26233 0.91180 1.25714 0.97998 0.99344 1.01851 1.70163 1.08755 1.26916 1.52777 0.85214 0.78621 0.79691 0.76980 1.19175 1.21899 1.21945 1.21156 0.84384 0.97717 0.95473 1.20699 0.98817 1.00478 0.92292 0.86889 0.88609 0.85808 0.91581 0.90848 0.91266 0.91643 0.87351 0.87155 0.74703 0.91454 0.92205 0.86997 0.96539 0.92565 0.94140 0.92281 0.95144 0.91995 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 14.32 67.79 0.97 -0.93 16 2 C -0.16 -1.74 9.52 25.65 0.24 -1.50 16 3 C -0.09 -1.37 6.03 29.85 0.18 -1.19 16 4 C 0.06 0.88 5.92 71.98 0.43 1.31 16 5 O -0.40 -8.80 9.88 -129.94 -1.28 -10.09 16 6 C 0.05 0.81 6.42 71.24 0.46 1.26 16 7 C 0.51 12.77 7.91 87.66 0.69 13.47 16 8 O -0.58 -20.73 16.50 16.00 0.26 -20.46 16 9 N -0.71 -15.69 5.55 -466.77 -2.59 -18.28 16 10 C 0.17 4.59 5.66 85.64 0.48 5.07 16 11 C -0.14 -4.32 5.22 -15.13 -0.08 -4.39 16 12 C -0.14 -5.09 9.47 27.11 0.26 -4.83 16 13 C 0.20 9.59 5.25 85.40 0.45 10.04 16 14 N -0.62 -30.12 3.01 -703.12 -2.12 -32.24 16 15 C -0.26 -13.85 9.71 84.03 0.82 -13.03 16 16 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 17 C -0.05 -3.01 5.01 84.86 0.43 -2.58 16 18 N -0.94 -54.82 11.07 21.65 0.24 -54.58 16 19 Si 0.97 44.73 29.58 68.60 2.03 46.76 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 C 0.14 5.29 6.57 86.25 0.57 5.86 16 24 C -0.08 -2.60 5.95 29.65 0.18 -2.42 16 25 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 26 H 0.10 0.98 7.84 -2.91 -0.02 0.96 16 27 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 28 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 7.02 8.46 -92.71 -0.78 6.24 16 35 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 36 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 37 H 0.11 3.63 7.73 -2.91 -0.02 3.61 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 3.04 6.40 -2.39 -0.02 3.03 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 41 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.79 367.52 2.79 -69.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.18 Total: 13.74 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.07 Total: 6.13 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.47 Total: -105.09 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.02 Total: -30.55 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.79 2.79 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755899805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.636 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds