Wall clock time and date at job start Tue Mar 31 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 H 1.09000 * 109.46873 * 306.60876 * 3 2 1 5 5 C 1.50701 * 109.47173 * 186.61098 * 3 2 1 6 6 H 1.08002 * 120.00144 * 245.39923 * 5 3 2 7 7 C 1.37876 * 120.00143 * 65.40863 * 5 3 2 8 8 N 1.31510 * 120.00352 * 191.98518 * 7 5 3 9 9 Si 1.86801 * 119.99941 * 11.97899 * 7 5 3 10 10 H 1.48504 * 109.47038 * 86.85708 * 9 7 5 11 11 H 1.48499 * 109.47396 * 206.85652 * 9 7 5 12 12 H 1.48500 * 109.47411 * 326.85975 * 9 7 5 13 13 N 1.46901 * 109.47066 * 66.60876 * 3 2 1 14 14 C 1.46895 * 110.99930 * 255.76595 * 13 3 2 15 15 C 1.53121 * 109.52905 * 275.21332 * 14 13 3 16 16 C 1.53041 * 109.27789 * 182.50695 * 15 14 13 17 17 N 1.46847 * 109.57707 * 59.08273 * 16 15 14 18 18 C 1.46895 * 110.99836 * 174.19391 * 17 16 15 19 19 C 1.53008 * 109.47046 * 200.70810 * 18 17 16 20 20 F 1.39905 * 109.46630 * 53.97573 * 19 18 17 21 21 F 1.39897 * 109.47102 * 173.97484 * 19 18 17 22 22 F 1.39894 * 109.46879 * 293.97881 * 19 18 17 23 23 C 1.46848 * 111.19772 * 298.28948 * 17 16 15 24 24 C 1.53041 * 109.52379 * 61.74147 * 23 17 16 25 25 H 1.08997 * 109.46966 * 299.86499 * 1 2 3 26 26 H 1.08997 * 109.47616 * 59.86682 * 1 2 3 27 27 H 1.09003 * 109.47155 * 179.86828 * 1 2 3 28 28 H 1.09005 * 109.46970 * 239.99839 * 2 1 3 29 29 H 1.08999 * 109.47095 * 120.00254 * 2 1 3 30 30 H 0.96996 * 120.00388 * 180.02562 * 8 7 5 31 31 H 1.00892 * 111.00039 * 19.72689 * 13 3 2 32 32 H 1.09001 * 109.52441 * 35.34534 * 14 13 3 33 33 H 1.09007 * 109.49997 * 302.38473 * 15 14 13 34 34 H 1.09001 * 109.50116 * 62.49475 * 15 14 13 35 35 H 1.09000 * 109.40892 * 299.06739 * 16 15 14 36 36 H 1.09000 * 109.45250 * 179.12469 * 16 15 14 37 37 H 1.09000 * 109.47231 * 320.70330 * 18 17 16 38 38 H 1.08996 * 109.47382 * 80.71226 * 18 17 16 39 39 H 1.08999 * 109.46130 * 301.73084 * 23 17 16 40 40 H 1.08994 * 109.45420 * 181.75136 * 23 17 16 41 41 H 1.08996 * 109.50642 * 180.87944 * 24 23 17 42 42 H 1.09002 * 109.50117 * 60.76076 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5833 1.9892 -0.8249 5 6 3.5381 1.4455 -0.1636 6 1 4.1681 1.8031 0.6375 7 6 4.1045 0.9921 -1.3360 8 7 5.3995 0.7713 -1.3983 9 14 3.0325 0.6911 -2.8359 10 1 2.8917 1.9536 -3.6051 11 1 3.6620 -0.3440 -3.6946 12 1 1.6916 0.2247 -2.4005 13 7 1.6848 2.0874 1.2712 14 6 0.5554 3.0101 1.0958 15 6 1.0745 4.3702 0.6213 16 6 -0.0992 5.3449 0.5005 17 7 -0.7625 5.4801 1.8037 18 6 -1.8074 6.5116 1.7580 19 6 -2.1125 6.9918 3.1783 20 9 -0.9263 7.4005 3.7973 21 9 -3.0055 8.0674 3.1252 22 9 -2.6846 5.9464 3.9111 23 6 -1.3109 4.1953 2.2563 24 6 -0.1732 3.1867 2.4310 25 1 -0.3633 0.5117 0.8912 26 1 -0.3634 0.5159 -0.8887 27 1 -0.3633 -1.0277 -0.0024 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.7980 0.4527 -2.2232 31 1 1.4832 1.3999 1.9815 32 1 -0.1344 2.6049 0.3554 33 1 1.7946 4.7567 1.3426 34 1 1.5563 4.2571 -0.3499 35 1 -0.8116 4.9651 -0.2319 36 1 0.2692 6.3186 0.1778 37 1 -1.4618 7.3525 1.1566 38 1 -2.7109 6.0941 1.3137 39 1 -2.0175 3.8209 1.5156 40 1 -1.8224 4.3342 3.2087 41 1 -0.5821 2.2287 2.7519 42 1 0.5267 3.5540 3.1816 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:32 Heat of formation + Delta-G solvation = -151.870886 kcal Electronic energy + Delta-G solvation = -25134.849588 eV Core-core repulsion = 21120.513882 eV Total energy + Delta-G solvation = -4014.335706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.22168 -47.81292 -47.61329 -39.27478 -36.72916 -33.73938 -31.97040 -30.84184 -30.44101 -28.30403 -26.65384 -23.60513 -23.15015 -22.59901 -21.86646 -19.87477 -19.52632 -18.65841 -18.60051 -17.52306 -16.76938 -15.85185 -15.30406 -15.23205 -14.70965 -14.60754 -14.52243 -14.26554 -14.04913 -14.01985 -13.84810 -13.77834 -13.44564 -13.24807 -12.95856 -12.74888 -12.43419 -12.16264 -11.94870 -11.80570 -11.60475 -11.14708 -11.04932 -10.84052 -10.76158 -10.63643 -10.35168 -9.97646 -9.89442 -9.33445 -9.23042 -8.69271 -8.40497 -7.34169 -6.03101 -3.96276 2.54544 3.26482 3.33846 3.34895 3.37600 3.67079 3.85267 4.28020 4.43542 4.69194 4.76916 4.91631 4.96304 5.04361 5.23054 5.29236 5.36796 5.44406 5.62176 5.73262 5.79699 5.82668 5.84142 5.95421 5.99108 6.13268 6.22700 6.39571 6.48210 6.54746 6.66434 6.75536 6.80309 6.85376 6.92627 7.18920 7.79278 7.98159 8.36593 8.75356 9.14091 9.62551 11.10621 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.003635 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.648852 B = 7700.228513 C = 7948.432128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.154 4.154 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.252 1.252 13 N -0.666 5.666 14 C 0.087 3.913 15 C -0.103 4.103 16 C 0.060 3.940 17 N -0.530 5.530 18 C 0.008 3.992 19 C 0.457 3.543 20 F -0.171 7.171 21 F -0.188 7.188 22 F -0.184 7.184 23 C 0.042 3.958 24 C -0.117 4.117 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.918 9.964 5.963 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.085 3.915 4 H 0.038 0.962 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.296 5.296 14 C -0.024 4.024 15 C -0.142 4.142 16 C -0.067 4.067 17 N -0.255 5.255 18 C -0.122 4.122 19 C 0.402 3.598 20 F -0.152 7.152 21 F -0.170 7.170 22 F -0.166 7.166 23 C -0.086 4.086 24 C -0.155 4.155 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.921 10.529 6.140 20.854 hybrid contribution -1.886 -1.027 -1.473 2.604 sum -18.807 9.502 4.668 21.582 Atomic orbital electron populations 1.21920 0.98643 1.00105 1.00387 1.22685 0.92671 1.01787 1.02211 1.19582 0.96752 0.88188 0.86963 0.96157 1.21030 0.89308 1.41113 1.01841 0.90151 1.24916 0.94662 0.95099 0.98479 1.69936 1.10786 1.45928 1.27037 0.87403 0.82199 0.78135 0.83915 1.20725 1.21607 1.17651 1.60615 1.36611 1.22271 1.10119 1.21580 0.91628 0.94274 0.94896 1.21589 0.96163 0.93355 1.03052 1.22228 0.96461 1.00830 0.87187 1.61776 1.26693 1.06823 1.30177 1.23186 0.98243 0.99637 0.91132 1.20573 0.74172 0.74950 0.90069 1.93216 1.46653 1.90481 1.84863 1.93174 1.69497 1.57476 1.96825 1.93101 1.85328 1.57655 1.80468 1.22487 0.96783 0.88416 1.00899 1.21766 0.97066 0.97625 0.99011 0.93686 0.93846 0.94026 0.91684 0.92408 0.92847 0.85432 0.94958 0.90120 0.90609 0.94663 0.90312 0.86459 0.90205 0.94563 0.89376 0.91717 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.94 37.15 0.33 -2.23 16 2 C -0.15 -3.16 4.49 -26.74 -0.12 -3.28 16 3 C 0.19 4.31 1.53 -68.87 -0.11 4.21 16 4 H 0.02 0.47 5.96 -51.93 -0.31 0.16 16 5 C -0.49 -13.57 9.29 -34.44 -0.32 -13.89 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.96 5.37 -17.82 -0.10 1.87 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.86 20.65 25.82 -169.99 -4.39 16.26 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.25 -5.64 5.27 56.52 0.30 -5.34 16 13 N -0.67 -12.75 5.88 -100.83 -0.59 -13.34 16 14 C 0.09 1.37 1.63 -67.59 -0.11 1.26 16 15 C -0.10 -1.59 5.57 -26.65 -0.15 -1.74 16 16 C 0.06 0.71 5.42 -3.83 -0.02 0.69 16 17 N -0.53 -5.97 4.40 -234.67 -1.03 -7.00 16 18 C 0.01 0.07 5.12 -3.82 -0.02 0.05 16 19 C 0.46 4.58 3.27 37.16 0.12 4.70 16 20 F -0.17 -2.05 17.13 2.25 0.04 -2.01 16 21 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 22 F -0.18 -1.98 14.66 2.25 0.03 -1.94 16 23 C 0.04 0.47 5.23 -3.83 -0.02 0.45 16 24 C -0.12 -1.52 5.37 -26.65 -0.14 -1.66 16 25 H 0.04 0.68 6.68 -51.93 -0.35 0.33 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.44 4.65 -51.93 -0.24 1.20 16 29 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.33 5.88 7.53 -39.30 -0.30 5.58 16 32 H 0.03 0.53 6.52 -51.93 -0.34 0.19 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.32 7.83 -51.93 -0.41 0.91 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.12 0.82 7.78 -51.93 -0.40 0.42 16 38 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.96 5.46 -51.93 -0.28 0.68 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -29.56 329.56 -7.30 -36.86 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.49 Total: 4.07 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.65 Total: -9.59 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.85 Total: -46.82 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.11 Total: -5.75 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.39 Total: 16.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.56 -7.30 -36.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.011 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds