Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 H 1.09000 * 109.46873 * 306.60876 * 3 2 1 5 5 C 1.50701 * 109.47173 * 186.61098 * 3 2 1 6 6 H 1.08002 * 120.00144 * 245.39923 * 5 3 2 7 7 C 1.37876 * 120.00143 * 65.40863 * 5 3 2 8 8 N 1.31510 * 120.00352 * 191.98518 * 7 5 3 9 9 Si 1.86801 * 119.99941 * 11.97899 * 7 5 3 10 10 H 1.48504 * 109.47038 * 86.85708 * 9 7 5 11 11 H 1.48499 * 109.47396 * 206.85652 * 9 7 5 12 12 H 1.48500 * 109.47411 * 326.85975 * 9 7 5 13 13 N 1.46901 * 109.47066 * 66.60876 * 3 2 1 14 14 C 1.46895 * 110.99930 * 255.76595 * 13 3 2 15 15 C 1.53121 * 109.52905 * 275.21332 * 14 13 3 16 16 C 1.53041 * 109.27789 * 182.50695 * 15 14 13 17 17 N 1.46847 * 109.57707 * 59.08273 * 16 15 14 18 18 C 1.46895 * 110.99836 * 174.19391 * 17 16 15 19 19 C 1.53008 * 109.47046 * 200.70810 * 18 17 16 20 20 F 1.39905 * 109.46630 * 53.97573 * 19 18 17 21 21 F 1.39897 * 109.47102 * 173.97484 * 19 18 17 22 22 F 1.39894 * 109.46879 * 293.97881 * 19 18 17 23 23 C 1.46848 * 111.19772 * 298.28948 * 17 16 15 24 24 C 1.53041 * 109.52379 * 61.74147 * 23 17 16 25 25 H 1.08997 * 109.46966 * 299.86499 * 1 2 3 26 26 H 1.08997 * 109.47616 * 59.86682 * 1 2 3 27 27 H 1.09003 * 109.47155 * 179.86828 * 1 2 3 28 28 H 1.09005 * 109.46970 * 239.99839 * 2 1 3 29 29 H 1.08999 * 109.47095 * 120.00254 * 2 1 3 30 30 H 0.96996 * 120.00388 * 180.02562 * 8 7 5 31 31 H 1.00892 * 111.00039 * 19.72689 * 13 3 2 32 32 H 1.09001 * 109.52441 * 35.34534 * 14 13 3 33 33 H 1.09007 * 109.49997 * 302.38473 * 15 14 13 34 34 H 1.09001 * 109.50116 * 62.49475 * 15 14 13 35 35 H 1.09000 * 109.40892 * 299.06739 * 16 15 14 36 36 H 1.09000 * 109.45250 * 179.12469 * 16 15 14 37 37 H 1.09000 * 109.47231 * 320.70330 * 18 17 16 38 38 H 1.08996 * 109.47382 * 80.71226 * 18 17 16 39 39 H 1.08999 * 109.46130 * 301.73084 * 23 17 16 40 40 H 1.08994 * 109.45420 * 181.75136 * 23 17 16 41 41 H 1.08996 * 109.50642 * 180.87944 * 24 23 17 42 42 H 1.09002 * 109.50117 * 60.76076 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5833 1.9892 -0.8249 5 6 3.5381 1.4455 -0.1636 6 1 4.1681 1.8031 0.6375 7 6 4.1045 0.9921 -1.3360 8 7 5.3995 0.7713 -1.3983 9 14 3.0325 0.6911 -2.8359 10 1 2.8917 1.9536 -3.6051 11 1 3.6620 -0.3440 -3.6946 12 1 1.6916 0.2247 -2.4005 13 7 1.6848 2.0874 1.2712 14 6 0.5554 3.0101 1.0958 15 6 1.0745 4.3702 0.6213 16 6 -0.0992 5.3449 0.5005 17 7 -0.7625 5.4801 1.8037 18 6 -1.8074 6.5116 1.7580 19 6 -2.1125 6.9918 3.1783 20 9 -0.9263 7.4005 3.7973 21 9 -3.0055 8.0674 3.1252 22 9 -2.6846 5.9464 3.9111 23 6 -1.3109 4.1953 2.2563 24 6 -0.1732 3.1867 2.4310 25 1 -0.3633 0.5117 0.8912 26 1 -0.3634 0.5159 -0.8887 27 1 -0.3633 -1.0277 -0.0024 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.7980 0.4527 -2.2232 31 1 1.4832 1.3999 1.9815 32 1 -0.1344 2.6049 0.3554 33 1 1.7946 4.7567 1.3426 34 1 1.5563 4.2571 -0.3499 35 1 -0.8116 4.9651 -0.2319 36 1 0.2692 6.3186 0.1778 37 1 -1.4618 7.3525 1.1566 38 1 -2.7109 6.0941 1.3137 39 1 -2.0175 3.8209 1.5156 40 1 -1.8224 4.3342 3.2087 41 1 -0.5821 2.2287 2.7519 42 1 0.5267 3.5540 3.1816 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = -172.642290 kcal Electronic energy + Delta-G solvation = -25135.750304 eV Core-core repulsion = 21120.513882 eV Total energy + Delta-G solvation = -4015.236422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.00664 -48.58246 -48.44157 -40.34443 -38.14477 -35.13082 -33.90417 -31.85912 -31.65773 -29.61723 -28.19702 -24.80909 -24.18601 -23.95513 -22.92168 -21.55750 -20.69143 -19.45986 -19.39998 -18.74432 -18.31067 -16.98842 -16.80559 -16.33123 -15.99841 -15.64438 -15.47070 -15.36830 -15.12532 -14.95169 -14.87783 -14.67350 -14.61839 -14.52772 -14.39120 -14.10711 -13.54503 -13.49320 -13.20048 -13.04447 -12.76773 -12.64694 -12.44321 -12.32504 -12.10963 -12.01727 -11.74587 -11.60029 -11.28448 -11.15220 -10.99593 -10.51937 -9.50252 -8.89339 -8.22545 -6.20414 1.34956 1.37433 1.46116 1.79971 2.38476 2.53595 2.94868 3.10781 3.13888 3.46318 3.51446 3.86684 3.96477 4.14774 4.22346 4.31091 4.32857 4.36796 4.40764 4.48237 4.49987 4.60376 4.66597 4.83314 4.83806 4.90922 4.99530 5.10015 5.12563 5.16988 5.24330 5.37056 5.51406 5.55521 5.78149 5.85632 5.93289 6.16230 6.79799 6.86614 6.90423 7.43518 8.95271 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.003635 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.648852 B = 7700.228513 C = 7948.432128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.020 0.980 5 C -0.499 4.499 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.952 5.952 9 Si 0.924 3.076 10 H -0.277 1.277 11 H -0.293 1.293 12 H -0.219 1.219 13 N -0.683 5.683 14 C 0.088 3.912 15 C -0.103 4.103 16 C 0.071 3.929 17 N -0.547 5.547 18 C 0.013 3.987 19 C 0.456 3.544 20 F -0.186 7.186 21 F -0.187 7.187 22 F -0.189 7.189 23 C 0.046 3.954 24 C -0.109 4.109 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.334 0.666 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.714 10.209 5.296 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C 0.094 3.906 4 H 0.038 0.962 5 C -0.538 4.538 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.593 5.593 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.142 1.142 13 N -0.313 5.313 14 C -0.021 4.021 15 C -0.142 4.142 16 C -0.056 4.056 17 N -0.272 5.272 18 C -0.117 4.117 19 C 0.401 3.599 20 F -0.168 7.168 21 F -0.168 7.168 22 F -0.171 7.171 23 C -0.081 4.081 24 C -0.147 4.147 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.755 10.787 5.502 24.029 hybrid contribution -0.616 -1.038 -1.120 1.647 sum -21.371 9.749 4.382 23.895 Atomic orbital electron populations 1.21819 0.94973 1.01894 1.01429 1.22530 0.95883 0.99587 1.01209 1.19307 0.93086 0.89877 0.88365 0.96228 1.21356 0.92120 1.39947 1.00353 0.95387 1.25788 0.95918 0.95043 1.01916 1.70109 1.13216 1.48047 1.27972 0.86303 0.81687 0.77986 0.79222 1.20343 1.21904 1.14189 1.60424 1.39233 1.22711 1.08960 1.21643 0.90612 0.93175 0.96712 1.21525 0.97388 0.94535 1.00761 1.22064 0.95250 1.00428 0.87882 1.61631 1.28205 1.07433 1.29923 1.23273 0.98525 0.99542 0.90342 1.20816 0.73645 0.74840 0.90560 1.93189 1.47628 1.90668 1.85295 1.93177 1.69370 1.57444 1.96820 1.93089 1.85353 1.57847 1.80766 1.22447 0.95958 0.87968 1.01760 1.21685 0.97214 0.99116 0.96732 0.92000 0.93449 0.91905 0.93391 0.92880 0.92927 0.84711 0.94295 0.92524 0.93224 0.93171 0.88889 0.84525 0.87781 0.93053 0.88736 0.90265 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.94 71.98 0.64 -3.60 16 2 C -0.15 -6.00 4.49 30.59 0.14 -5.86 16 3 C 0.20 8.97 1.53 44.17 0.07 9.04 16 4 H 0.02 0.89 5.96 -2.39 -0.01 0.87 16 5 C -0.50 -28.47 9.29 25.60 0.24 -28.23 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.56 5.37 84.65 0.45 1.01 16 8 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 9 Si 0.92 42.87 25.82 68.60 1.77 44.64 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.22 -8.95 5.27 99.48 0.52 -8.42 16 13 N -0.68 -26.05 5.88 -472.91 -2.78 -28.83 16 14 C 0.09 2.65 1.63 45.00 0.07 2.72 16 15 C -0.10 -3.14 5.57 30.65 0.17 -2.97 16 16 C 0.07 1.49 5.42 86.33 0.47 1.96 16 17 N -0.55 -10.77 4.40 -896.36 -3.95 -14.71 16 18 C 0.01 0.18 5.12 86.31 0.44 0.62 16 19 C 0.46 8.00 3.27 71.98 0.24 8.23 16 20 F -0.19 -4.19 17.13 44.97 0.77 -3.42 16 21 F -0.19 -3.20 17.32 44.97 0.78 -2.42 16 22 F -0.19 -3.60 14.66 44.97 0.66 -2.94 16 23 C 0.05 0.90 5.23 86.33 0.45 1.35 16 24 C -0.11 -2.62 5.37 30.65 0.16 -2.46 16 25 H 0.06 1.61 6.68 -2.39 -0.02 1.60 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 2.03 4.65 -2.38 -0.01 2.02 16 29 H 0.05 2.10 8.01 -2.39 -0.02 2.08 16 30 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.33 11.80 7.53 -89.70 -0.68 11.12 16 32 H 0.04 1.14 6.52 -2.39 -0.02 1.13 16 33 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 1.74 7.83 -2.39 -0.02 1.72 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.69 7.93 -2.39 -0.02 1.67 16 37 H 0.14 1.37 7.78 -2.39 -0.02 1.35 16 38 H 0.10 1.00 7.99 -2.39 -0.02 0.98 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.76 5.46 -2.39 -0.01 1.74 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.44 329.56 1.27 -66.18 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.17 Total: 19.62 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.55 Total: -18.19 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -6.43 Total: -103.47 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.21 Total: -8.78 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.77 Total: 44.64 kcal Total: -67.44 1.27 -66.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.466 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds