Wall clock time and date at job start Tue Mar 31 2020 08:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46968 * 2 1 4 4 O 1.45205 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.34228 * 117.00187 * 179.97438 * 4 3 2 6 6 O 1.20820 * 120.00153 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99885 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.47110 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47116 * 179.97438 * 8 7 5 10 10 C 1.39862 * 126.04094 * 269.68901 * 9 8 7 11 11 C 1.50702 * 125.90180 * 0.02562 * 10 9 8 12 12 N 1.30842 * 108.19992 * 179.81747 * 10 9 8 13 13 N 1.40084 * 108.20663 * 0.44091 * 12 10 9 14 14 C 1.46495 * 126.04013 * 179.73793 * 13 12 10 15 15 C 1.50699 * 109.47131 * 269.98016 * 14 13 12 16 16 H 1.08002 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00055 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99907 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46872 * 89.99940 * 19 17 15 21 21 H 1.48495 * 109.47211 * 210.00060 * 19 17 15 22 22 H 1.48505 * 109.47239 * 330.00326 * 19 17 15 23 23 C 1.34950 * 107.92381 * 359.71898 * 13 12 10 24 24 C 1.50694 * 126.12576 * 179.97438 * 23 13 12 25 25 H 1.09005 * 109.46722 * 60.00554 * 1 2 3 26 26 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47519 * 300.00177 * 1 2 3 28 28 H 1.09001 * 109.47519 * 239.99823 * 2 1 3 29 29 H 1.09008 * 109.47224 * 119.99422 * 2 1 3 30 30 H 1.08995 * 109.47988 * 59.99562 * 3 2 1 31 31 H 1.09005 * 109.46947 * 299.99308 * 3 2 1 32 32 H 1.09000 * 109.47543 * 59.99651 * 7 5 4 33 33 H 1.09008 * 109.47338 * 300.00164 * 7 5 4 34 34 H 1.09000 * 109.46884 * 60.00335 * 8 7 5 35 35 H 1.09000 * 109.46955 * 299.99651 * 8 7 5 36 36 H 1.08998 * 109.47393 * 89.99256 * 11 10 9 37 37 H 1.09001 * 109.46747 * 209.99996 * 11 10 9 38 38 H 1.08998 * 109.46776 * 329.99757 * 11 10 9 39 39 H 1.09001 * 109.47188 * 29.97306 * 14 13 12 40 40 H 1.08997 * 109.47530 * 149.97532 * 14 13 12 41 41 H 0.96999 * 119.99548 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47170 * 270.02464 * 24 23 13 43 43 H 1.09004 * 109.47112 * 30.02444 * 24 23 13 44 44 H 1.09003 * 109.46820 * 150.02019 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4920 1.4426 0.0006 5 6 4.1013 2.6386 0.0002 6 8 3.4433 3.6519 -0.0012 7 6 5.6062 2.7175 0.0013 8 6 6.0400 4.1847 0.0012 9 6 7.5450 4.2636 0.0030 10 6 8.3651 4.3133 1.1348 11 6 7.8965 4.2968 2.5671 12 7 9.6097 4.3722 0.7355 13 7 9.6204 4.3720 -0.6653 14 6 10.8099 4.4334 -1.5182 15 6 11.1436 5.8734 -1.8118 16 1 10.5306 6.6637 -1.4042 17 6 12.2314 6.1819 -2.6008 18 7 12.5224 7.4385 -2.8574 19 14 13.2920 4.8150 -3.3051 20 1 12.7597 4.4086 -4.6305 21 1 14.6869 5.3004 -3.4596 22 1 13.2725 3.6493 -2.3853 23 6 8.3413 4.3047 -1.0904 24 6 7.8821 4.2804 -2.5254 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 5.9968 2.2226 -0.8879 33 1 5.9953 2.2240 0.8921 34 1 5.6496 4.6790 0.8907 35 1 5.6510 4.6784 -0.8893 36 1 7.8375 3.2666 2.9182 37 1 8.6010 4.8521 3.1862 38 1 6.9119 4.7598 2.6325 39 1 11.6491 3.9633 -1.0056 40 1 10.6144 3.9079 -2.4528 41 1 13.2875 7.6555 -3.4128 42 1 7.7179 5.3008 -2.8717 43 1 8.6446 3.8055 -3.1429 44 1 6.9518 3.7173 -2.5997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061390720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:49 Heat of formation + Delta-G solvation = -62.956347 kcal Electronic energy + Delta-G solvation = -23190.621444 eV Core-core repulsion = 19721.998102 eV Total energy + Delta-G solvation = -3468.623342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22223 -41.41419 -37.89252 -36.11787 -34.97218 -34.69659 -34.26758 -32.06527 -30.79479 -28.69605 -27.77319 -27.39553 -25.28024 -23.72308 -22.44969 -21.68974 -20.34950 -20.18225 -19.25708 -18.62767 -17.80885 -17.45518 -17.15613 -16.38606 -16.05275 -15.73842 -15.09849 -14.98220 -14.78392 -14.55372 -14.27459 -14.03617 -13.84319 -13.65208 -13.62526 -13.43156 -13.30982 -13.23343 -13.00265 -12.86794 -12.78755 -12.56999 -12.49327 -12.09681 -12.04008 -11.96866 -11.94504 -11.82526 -11.46095 -11.40971 -11.17002 -10.91399 -9.85139 -9.05119 -8.42888 -6.53963 1.12385 1.23828 1.31933 1.34802 1.45154 1.63534 1.89398 2.00057 2.24406 2.89234 3.67597 3.83085 3.89763 3.94393 3.98063 4.15386 4.18958 4.29657 4.31510 4.43387 4.50229 4.53876 4.56342 4.62531 4.69906 4.76470 4.79198 4.81075 4.85110 4.89040 5.02840 5.11895 5.12626 5.18988 5.22082 5.23288 5.33016 5.37204 5.48607 5.54002 5.91291 6.04700 6.40344 6.50417 6.79155 7.04910 7.10400 8.73880 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.002817 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.671344 B = 9936.141687 C =10400.772893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.058 3.942 4 O -0.362 6.362 5 C 0.468 3.532 6 O -0.539 6.539 7 C -0.100 4.100 8 C -0.009 4.009 9 C -0.259 4.259 10 C 0.058 3.942 11 C -0.065 4.065 12 N -0.347 5.347 13 N -0.355 5.355 14 C 0.241 3.759 15 C -0.550 4.550 16 H 0.021 0.979 17 C 0.019 3.981 18 N -0.937 5.937 19 Si 0.952 3.048 20 H -0.249 1.249 21 H -0.278 1.278 22 H -0.246 1.246 23 C 0.083 3.917 24 C -0.087 4.087 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.274 0.726 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -17.628 4.373 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.016 4.016 4 O -0.279 6.279 5 C 0.313 3.687 6 O -0.429 6.429 7 C -0.137 4.137 8 C -0.048 4.048 9 C -0.270 4.270 10 C -0.107 4.107 11 C -0.124 4.124 12 N -0.171 5.171 13 N -0.135 5.135 14 C 0.120 3.880 15 C -0.588 4.588 16 H 0.039 0.961 17 C -0.181 4.181 18 N -0.576 5.576 19 Si 0.773 3.227 20 H -0.173 1.173 21 H -0.203 1.203 22 H -0.170 1.170 23 C -0.047 4.047 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.553 -17.159 4.552 26.410 hybrid contribution 0.106 0.585 -0.614 0.855 sum -19.447 -16.574 3.938 25.853 Atomic orbital electron populations 1.21703 0.93115 1.03316 1.02501 1.21527 0.96936 0.93201 1.04029 1.23334 0.75710 1.00059 1.02459 1.86509 1.24309 1.33369 1.83744 1.24184 0.92690 0.80831 0.71018 1.90660 1.68059 1.37327 1.46880 1.21455 0.85304 0.99546 1.07410 1.19454 0.87632 0.94268 1.03429 1.19616 0.96414 1.20647 0.90364 1.22805 0.89986 0.99498 0.98442 1.20247 1.01632 1.03956 0.86538 1.77222 1.22345 1.27214 0.90297 1.48682 1.06401 1.54360 1.04017 1.19672 0.82254 0.96677 0.89354 1.21248 1.13709 0.91157 1.32688 0.96065 1.25876 0.98002 0.98662 0.95524 1.70040 1.29101 1.19943 1.38486 0.85656 0.77949 0.78933 0.80156 1.17295 1.20304 1.16963 1.21500 0.84531 1.00155 0.98469 1.20513 1.02773 1.03534 0.87718 0.92224 0.90543 0.92144 0.90541 0.90437 0.91407 0.91541 0.86448 0.86097 0.90526 0.91253 0.88680 0.91768 0.88957 0.93774 0.91370 0.91733 0.90982 0.90838 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -1.30 6.31 30.59 0.19 -1.11 16 3 C 0.06 0.92 5.47 71.98 0.39 1.32 16 4 O -0.36 -7.11 10.22 -51.40 -0.53 -7.63 16 5 C 0.47 10.27 7.96 71.23 0.57 10.84 16 6 O -0.54 -14.99 15.73 21.98 0.35 -14.65 16 7 C -0.10 -1.94 5.79 29.85 0.17 -1.77 16 8 C -0.01 -0.23 4.41 29.85 0.13 -0.10 16 9 C -0.26 -8.57 5.35 -20.14 -0.11 -8.68 16 10 C 0.06 2.08 7.22 43.10 0.31 2.39 16 11 C -0.07 -1.66 10.26 71.24 0.73 -0.93 16 12 N -0.35 -15.77 12.58 -47.38 -0.60 -16.37 16 13 N -0.35 -16.20 3.60 -338.42 -1.22 -17.42 16 14 C 0.24 11.58 5.07 85.63 0.43 12.01 16 15 C -0.55 -32.00 9.94 25.60 0.25 -31.75 16 16 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 17 C 0.02 1.08 5.47 84.66 0.46 1.54 16 18 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 19 Si 0.95 41.25 27.47 68.60 1.88 43.14 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.25 -9.91 6.54 99.48 0.65 -9.26 16 23 C 0.08 3.13 6.93 41.40 0.29 3.42 16 24 C -0.09 -2.62 9.72 71.23 0.69 -1.92 16 25 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.07 1.09 8.13 -2.38 -0.02 1.07 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.08 1.89 7.20 -2.39 -0.02 1.88 16 35 H 0.07 1.80 7.73 -2.39 -0.02 1.78 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.94 7.25 -2.39 -0.02 1.92 16 39 H 0.04 2.14 7.20 -2.39 -0.02 2.12 16 40 H 0.07 2.89 6.48 -2.39 -0.02 2.88 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.07 2.15 7.08 -2.39 -0.02 2.13 16 44 H 0.11 2.40 7.77 -2.39 -0.02 2.38 16 Total: -1.00 -75.39 368.89 6.34 -69.04 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.92 Total: 16.43 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.24 Total: -15.21 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -1.51 Total: -91.12 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.18 Total: -22.28 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.14 kcal Total: -75.39 6.34 -69.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061390720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -75.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds