Wall clock time and date at job start Tue Mar 31 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 N 1.46899 * 109.47385 * 120.00176 * 2 1 3 5 5 C 1.46900 * 111.00082 * 306.04701 * 4 2 1 6 6 C 1.46902 * 110.99872 * 69.99626 * 4 2 1 7 7 C 1.50705 * 109.47303 * 169.99899 * 6 4 2 8 8 O 1.21282 * 119.99548 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00646 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99681 * 15 13 11 18 18 H 1.48494 * 109.47431 * 240.00047 * 15 13 11 19 19 C 1.46505 * 119.99455 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09003 * 109.47044 * 59.99723 * 1 2 3 26 26 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46900 * 299.99445 * 1 2 3 28 28 H 1.09001 * 109.46900 * 240.00555 * 2 1 3 29 29 H 1.09004 * 109.47156 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47430 * 300.00282 * 3 2 1 31 31 H 1.09001 * 109.46836 * 60.00516 * 3 2 1 32 32 H 1.08995 * 109.47242 * 183.95356 * 5 4 2 33 33 H 1.08999 * 109.46752 * 303.95329 * 5 4 2 34 34 H 1.08999 * 109.46953 * 63.94910 * 5 4 2 35 35 H 1.09006 * 109.47012 * 50.00487 * 6 4 2 36 36 H 1.08999 * 109.47700 * 290.00780 * 6 4 2 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4344 -0.1150 2.4167 6 6 1.7529 -2.1349 1.1202 7 6 2.4775 -2.8419 2.2367 8 8 3.1496 -2.2065 3.0213 9 7 2.3786 -4.1800 2.3631 10 6 1.5673 -4.9475 1.4150 11 6 0.1542 -5.0475 1.9290 12 1 -0.1128 -4.5859 2.8681 13 6 -0.7979 -5.7282 1.2002 14 7 -0.4729 -6.2899 0.0563 15 14 -2.5494 -5.8528 1.8376 16 1 -2.6551 -5.1409 3.1365 17 1 -3.4780 -5.2341 0.8576 18 1 -2.9075 -7.2817 2.0251 19 6 3.0825 -4.8671 3.4488 20 6 2.1890 -4.9396 4.6602 21 6 1.3275 -5.9329 4.9439 22 6 0.7013 -5.5954 6.1658 23 6 1.2180 -4.4164 6.5559 24 8 2.1220 -4.0261 5.6424 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.8666 -0.5988 3.2925 33 1 1.6467 0.9536 2.4501 34 1 0.3557 -0.2710 2.4104 35 1 2.1025 -2.5170 0.1611 36 1 0.6814 -2.3120 1.2130 37 1 1.5673 -4.4456 0.4474 38 1 1.9857 -5.9479 1.3054 39 1 -1.1429 -6.7686 -0.4566 40 1 3.3453 -5.8759 3.1303 41 1 3.9898 -4.3172 3.6989 42 1 1.1491 -6.8187 4.3525 43 1 -0.0481 -6.1734 6.6861 44 1 0.9537 -3.8768 7.4534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070944426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:15 Heat of formation + Delta-G solvation = -8.628977 kcal Electronic energy + Delta-G solvation = -25091.163054 eV Core-core repulsion = 21624.895523 eV Total energy + Delta-G solvation = -3466.267531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95417 -39.39967 -37.53590 -35.11277 -32.74365 -32.35225 -31.67566 -30.28770 -27.80160 -27.34859 -26.96171 -25.49460 -23.94977 -22.86072 -21.14159 -20.16578 -19.43557 -18.36339 -17.00549 -16.65090 -16.51889 -15.59750 -15.43639 -14.98909 -14.88342 -14.49346 -14.40054 -13.73691 -13.68883 -13.15885 -12.90467 -12.55085 -12.37960 -12.35994 -12.22628 -12.13884 -11.84589 -11.67618 -11.47131 -11.25124 -11.10199 -11.10009 -10.98677 -10.83168 -10.75554 -10.48683 -10.23954 -9.77884 -9.29663 -9.03113 -8.59555 -8.02180 -7.90105 -7.69679 -6.20851 -4.26101 2.23814 3.13053 3.18424 3.27929 3.32899 3.37257 3.67098 3.84118 4.30424 4.48822 5.05140 5.12777 5.22430 5.25021 5.35715 5.45223 5.56561 5.58046 5.68165 5.70523 5.77089 5.87325 5.95888 5.98087 6.00682 6.04296 6.10576 6.16512 6.25673 6.34740 6.46698 6.52711 6.54760 6.62041 6.69963 7.06067 7.09698 7.32346 7.45336 7.50571 7.73331 7.75751 8.03236 8.28118 8.80394 9.03240 9.41626 10.86102 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.006831 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.417777 B = 4098.234304 C = 5572.868006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 C -0.140 4.140 4 N -0.519 5.519 5 C 0.017 3.983 6 C 0.042 3.958 7 C 0.522 3.478 8 O -0.548 6.548 9 N -0.597 5.597 10 C 0.236 3.764 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.202 3.798 20 C -0.015 4.015 21 C -0.181 4.181 22 C -0.216 4.216 23 C -0.058 4.058 24 O -0.170 6.170 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 6.418 3.275 7.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 C -0.197 4.197 4 N -0.243 5.243 5 C -0.131 4.131 6 C -0.089 4.089 7 C 0.310 3.690 8 O -0.427 6.427 9 N -0.329 5.329 10 C 0.117 3.883 11 C -0.566 4.566 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.208 1.208 19 C 0.078 3.922 20 C -0.067 4.067 21 C -0.201 4.201 22 C -0.236 4.236 23 C -0.126 4.126 24 O -0.066 6.066 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.923 6.966 3.533 8.740 hybrid contribution -2.553 -0.652 0.258 2.648 sum 1.370 6.313 3.790 7.490 Atomic orbital electron populations 1.22512 0.97668 1.02693 1.01960 1.21722 0.92721 0.95387 0.93531 1.21809 1.01737 0.95006 1.01183 1.61945 1.58503 1.01758 1.02095 1.22561 0.96682 0.99878 0.94002 1.21966 1.00453 0.87865 0.98592 1.20375 0.80827 0.82023 0.85786 1.90578 1.41614 1.65540 1.44985 1.48311 1.49016 1.06611 1.28957 1.19504 0.89743 0.91661 0.87422 1.21515 0.93756 1.34457 1.06889 0.91937 1.24890 0.98824 0.95195 0.94735 1.69926 1.34463 1.35290 1.13402 0.86560 0.84636 0.77981 0.79124 1.19658 1.20986 1.20828 1.19609 0.92299 0.98857 0.81448 1.22957 1.03080 0.89126 0.91521 1.21566 0.98977 1.01922 0.97595 1.21768 1.04549 0.98443 0.98802 1.23842 0.95081 0.97806 0.95871 1.84061 1.49928 1.44264 1.28299 0.92407 0.91929 0.92343 0.90141 0.91974 0.92642 0.92724 0.89543 0.91996 0.95968 0.88398 0.90447 0.94285 0.94491 0.92662 0.87923 0.89486 0.83409 0.84255 0.79066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 8.44 37.16 0.31 -2.25 16 2 C 0.08 1.05 2.92 -67.71 -0.20 0.85 16 3 C -0.14 -1.65 9.12 37.16 0.34 -1.31 16 4 N -0.52 -8.77 4.45 -236.33 -1.05 -9.82 16 5 C 0.02 0.28 8.33 60.06 0.50 0.78 16 6 C 0.04 0.78 3.57 -4.97 -0.02 0.76 16 7 C 0.52 10.87 7.40 -10.98 -0.08 10.79 16 8 O -0.55 -12.36 13.89 5.56 0.08 -12.28 16 9 N -0.60 -12.27 2.44 -176.43 -0.43 -12.70 16 10 C 0.24 5.33 5.01 -5.20 -0.03 5.30 16 11 C -0.53 -13.17 9.04 -34.44 -0.31 -13.48 16 12 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 15 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.20 3.72 5.98 -5.19 -0.03 3.69 16 20 C -0.02 -0.30 6.90 -35.62 -0.25 -0.54 16 21 C -0.18 -3.41 10.40 -39.70 -0.41 -3.82 16 22 C -0.22 -3.67 10.91 -39.71 -0.43 -4.10 16 23 C -0.06 -0.94 12.09 29.41 0.36 -0.59 16 24 O -0.17 -3.32 10.65 5.68 0.06 -3.26 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 27 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 28 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.64 6.47 -51.93 -0.34 0.30 16 32 H 0.09 1.67 5.88 -51.93 -0.31 1.37 16 33 H 0.06 0.90 6.30 -51.93 -0.33 0.57 16 34 H 0.02 0.36 6.46 -51.93 -0.34 0.03 16 35 H 0.10 1.75 7.19 -51.93 -0.37 1.38 16 36 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 37 H 0.04 0.91 6.44 -51.93 -0.33 0.57 16 38 H 0.04 0.86 7.89 -51.93 -0.41 0.45 16 39 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.10 1.66 7.89 -51.93 -0.41 1.25 16 41 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 42 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 43 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 44 H 0.19 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -29.19 355.83 -7.37 -36.55 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.75 Total: 6.08 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.35 Total: -2.32 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.75 Total: -45.60 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.14 Total: -15.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.19 -7.37 -36.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070944426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.925 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds