Wall clock time and date at job start Tue Mar 31 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 N 1.46899 * 109.47385 * 120.00176 * 2 1 3 5 5 C 1.46900 * 111.00082 * 306.04701 * 4 2 1 6 6 C 1.46902 * 110.99872 * 69.99626 * 4 2 1 7 7 C 1.50705 * 109.47303 * 169.99899 * 6 4 2 8 8 O 1.21282 * 119.99548 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00646 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99681 * 15 13 11 18 18 H 1.48494 * 109.47431 * 240.00047 * 15 13 11 19 19 C 1.46505 * 119.99455 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09003 * 109.47044 * 59.99723 * 1 2 3 26 26 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46900 * 299.99445 * 1 2 3 28 28 H 1.09001 * 109.46900 * 240.00555 * 2 1 3 29 29 H 1.09004 * 109.47156 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47430 * 300.00282 * 3 2 1 31 31 H 1.09001 * 109.46836 * 60.00516 * 3 2 1 32 32 H 1.08995 * 109.47242 * 183.95356 * 5 4 2 33 33 H 1.08999 * 109.46752 * 303.95329 * 5 4 2 34 34 H 1.08999 * 109.46953 * 63.94910 * 5 4 2 35 35 H 1.09006 * 109.47012 * 50.00487 * 6 4 2 36 36 H 1.08999 * 109.47700 * 290.00780 * 6 4 2 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4344 -0.1150 2.4167 6 6 1.7529 -2.1349 1.1202 7 6 2.4775 -2.8419 2.2367 8 8 3.1496 -2.2065 3.0213 9 7 2.3786 -4.1800 2.3631 10 6 1.5673 -4.9475 1.4150 11 6 0.1542 -5.0475 1.9290 12 1 -0.1128 -4.5859 2.8681 13 6 -0.7979 -5.7282 1.2002 14 7 -0.4729 -6.2899 0.0563 15 14 -2.5494 -5.8528 1.8376 16 1 -2.6551 -5.1409 3.1365 17 1 -3.4780 -5.2341 0.8576 18 1 -2.9075 -7.2817 2.0251 19 6 3.0825 -4.8671 3.4488 20 6 2.1890 -4.9396 4.6602 21 6 1.3275 -5.9329 4.9439 22 6 0.7013 -5.5954 6.1658 23 6 1.2180 -4.4164 6.5559 24 8 2.1220 -4.0261 5.6424 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.8666 -0.5988 3.2925 33 1 1.6467 0.9536 2.4501 34 1 0.3557 -0.2710 2.4104 35 1 2.1025 -2.5170 0.1611 36 1 0.6814 -2.3120 1.2130 37 1 1.5673 -4.4456 0.4474 38 1 1.9857 -5.9479 1.3054 39 1 -1.1429 -6.7686 -0.4566 40 1 3.3453 -5.8759 3.1303 41 1 3.9898 -4.3172 3.6989 42 1 1.1491 -6.8187 4.3525 43 1 -0.0481 -6.1734 6.6861 44 1 0.9537 -3.8768 7.4534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070944426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:14 Heat of formation + Delta-G solvation = -25.651728 kcal Electronic energy + Delta-G solvation = -25091.901216 eV Core-core repulsion = 21624.895523 eV Total energy + Delta-G solvation = -3467.005693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.36922 -40.96868 -38.88290 -36.82710 -34.63513 -33.79918 -32.97249 -31.73567 -29.26174 -29.12532 -28.01749 -26.92341 -25.42883 -24.65398 -22.55107 -21.56843 -20.65358 -19.96423 -18.74405 -18.24034 -18.06976 -17.22172 -16.79310 -16.54638 -16.33759 -16.26758 -15.73739 -15.14249 -15.05757 -14.57996 -14.24536 -14.08975 -13.93119 -13.84351 -13.65194 -13.53447 -13.37626 -12.97532 -12.89870 -12.86454 -12.67229 -12.54998 -12.37779 -12.32376 -12.11408 -12.04826 -11.71009 -11.59280 -10.74793 -10.70399 -10.53145 -9.64819 -9.31336 -9.16512 -8.19233 -6.29026 0.82613 1.34615 1.39930 1.48846 1.67827 1.81360 2.27357 2.31322 2.44078 3.08048 3.12679 3.74593 3.93369 3.97604 4.15147 4.21464 4.23611 4.27543 4.37855 4.44774 4.47389 4.54702 4.60870 4.65923 4.78000 4.85855 4.88392 4.99585 5.00917 5.04669 5.09165 5.12221 5.20303 5.28961 5.32026 5.42573 5.64868 5.70794 5.80147 5.99974 6.08705 6.20411 6.32291 6.55935 6.83816 7.32738 7.44026 8.86876 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.006831 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.417777 B = 4098.234304 C = 5572.868006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 C -0.133 4.133 4 N -0.527 5.527 5 C 0.024 3.976 6 C 0.051 3.949 7 C 0.516 3.484 8 O -0.567 6.567 9 N -0.597 5.597 10 C 0.251 3.749 11 C -0.523 4.523 12 H 0.044 0.956 13 C 0.029 3.971 14 N -0.917 5.917 15 Si 0.940 3.060 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.198 3.802 20 C -0.038 4.038 21 C -0.191 4.191 22 C -0.229 4.229 23 C -0.050 4.050 24 O -0.192 6.192 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.021 0.979 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.165 0.835 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 7.372 3.573 8.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 C -0.190 4.190 4 N -0.251 5.251 5 C -0.124 4.124 6 C -0.079 4.079 7 C 0.305 3.695 8 O -0.447 6.447 9 N -0.329 5.329 10 C 0.131 3.869 11 C -0.561 4.561 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.556 5.556 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.203 1.203 19 C 0.075 3.925 20 C -0.089 4.089 21 C -0.211 4.211 22 C -0.248 4.248 23 C -0.117 4.117 24 O -0.088 6.088 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.160 0.840 43 H 0.182 0.818 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.222 7.916 3.831 9.366 hybrid contribution -2.320 -0.931 0.216 2.510 sum 0.901 6.985 4.047 8.122 Atomic orbital electron populations 1.22449 0.97243 1.01452 1.03087 1.21888 0.93092 0.96540 0.92204 1.21768 1.01478 0.93336 1.02459 1.61988 1.58985 1.00739 1.03363 1.22453 0.96242 1.00838 0.92855 1.21824 0.98873 0.89281 0.97955 1.20762 0.80651 0.82044 0.86020 1.90562 1.42551 1.65794 1.45756 1.48295 1.48761 1.06648 1.29179 1.19194 0.88948 0.91318 0.87473 1.21516 0.94890 1.33790 1.05939 0.93734 1.25425 1.01595 0.95160 0.94948 1.69988 1.35421 1.36043 1.14185 0.85772 0.81361 0.77932 0.78243 1.20305 1.20611 1.20320 1.19784 0.92058 0.99718 0.80937 1.23017 1.04056 0.89666 0.92124 1.21710 0.99195 1.01665 0.98527 1.22104 1.05238 0.99132 0.98313 1.24714 0.93268 0.97695 0.96029 1.84053 1.51051 1.44759 1.28977 0.90175 0.94304 0.92292 0.89869 0.92327 0.90288 0.92517 0.92481 0.89671 0.96089 0.87854 0.92262 0.94902 0.95196 0.92483 0.86057 0.89295 0.83959 0.81780 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.71 8.44 71.98 0.61 -4.10 16 2 C 0.07 1.87 2.92 44.92 0.13 2.00 16 3 C -0.13 -2.80 9.12 71.98 0.66 -2.14 16 4 N -0.53 -17.55 4.45 -901.60 -4.01 -21.56 16 5 C 0.02 0.79 8.33 127.69 1.06 1.85 16 6 C 0.05 1.94 3.57 85.56 0.31 2.25 16 7 C 0.52 21.85 7.40 87.66 0.65 22.50 16 8 O -0.57 -25.89 13.89 -3.04 -0.04 -25.93 16 9 N -0.60 -24.93 2.44 -830.50 -2.03 -26.96 16 10 C 0.25 11.49 5.01 85.63 0.43 11.92 16 11 C -0.52 -26.31 9.04 25.60 0.23 -26.08 16 12 H 0.04 2.39 7.65 -2.91 -0.02 2.37 16 13 C 0.03 1.49 5.46 84.65 0.46 1.95 16 14 N -0.92 -48.85 13.29 21.45 0.28 -48.57 16 15 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 C 0.20 7.40 5.98 85.63 0.51 7.91 16 20 C -0.04 -1.47 6.90 24.83 0.17 -1.30 16 21 C -0.19 -7.17 10.40 22.19 0.23 -6.94 16 22 C -0.23 -7.43 10.91 22.19 0.24 -7.18 16 23 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 24 O -0.19 -7.43 10.65 -2.58 -0.03 -7.46 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.17 6.91 -2.39 -0.02 1.15 16 27 H 0.06 1.49 6.42 -2.39 -0.02 1.48 16 28 H 0.08 2.15 7.93 -2.39 -0.02 2.14 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.17 6.47 -2.39 -0.02 1.15 16 32 H 0.06 2.22 5.88 -2.39 -0.01 2.21 16 33 H 0.08 2.35 6.30 -2.39 -0.02 2.34 16 34 H 0.02 0.68 6.46 -2.39 -0.02 0.66 16 35 H 0.10 3.74 7.19 -2.38 -0.02 3.72 16 36 H 0.06 2.46 6.92 -2.39 -0.02 2.45 16 37 H 0.03 1.55 6.44 -2.38 -0.02 1.54 16 38 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 39 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 40 H 0.12 3.94 7.89 -2.39 -0.02 3.93 16 41 H 0.09 3.25 7.42 -2.39 -0.02 3.23 16 42 H 0.14 5.40 8.06 -2.91 -0.02 5.37 16 43 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 44 H 0.23 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -61.91 355.83 3.69 -58.22 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.98 Total: 26.51 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.50 Total: 1.90 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.75 Total: -97.09 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.07 Total: -33.39 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -61.91 3.69 -58.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070944426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.567 kcal (2) G-P(sol) polarization free energy of solvation -61.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds