Wall clock time and date at job start Tue Mar 31 2020 06:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 N 1.46499 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00320 * 270.00289 * 4 3 2 6 6 H 1.08000 * 120.00694 * 142.90340 * 5 4 3 7 7 C 1.38958 * 119.99866 * 322.90781 * 5 4 3 8 8 N 1.31415 * 119.99728 * 339.85062 * 7 5 4 9 9 Si 1.86798 * 120.00226 * 159.85556 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99545 * 9 7 5 11 11 H 1.48499 * 109.46959 * 209.99890 * 9 7 5 12 12 H 1.48501 * 109.47156 * 329.99661 * 9 7 5 13 13 C 1.34779 * 119.99994 * 89.99561 * 4 3 2 14 14 O 1.21301 * 119.99745 * 5.32367 * 13 4 3 15 15 C 1.50699 * 120.00175 * 185.32169 * 13 4 3 16 16 C 1.50701 * 109.46805 * 185.09050 * 15 13 4 17 17 C 1.41377 * 128.00484 * 90.00438 * 16 15 13 18 18 C 1.50697 * 126.80531 * 359.75258 * 17 16 15 19 19 C 1.53001 * 109.47070 * 90.00157 * 18 17 16 20 20 N 1.30180 * 106.39490 * 179.73459 * 17 16 15 21 21 O 1.20926 * 111.60059 * 359.97438 * 20 17 16 22 22 C 1.34031 * 111.57029 * 0.02562 * 21 20 17 23 23 C 1.50702 * 126.78037 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47217 * 269.96239 * 23 22 21 25 25 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47184 * 300.00597 * 1 2 3 27 27 H 1.09002 * 109.46671 * 60.00164 * 1 2 3 28 28 H 1.08999 * 109.47184 * 239.99403 * 2 1 3 29 29 H 1.09002 * 109.46671 * 119.99836 * 2 1 3 30 30 H 1.08999 * 109.47004 * 59.99731 * 3 2 1 31 31 H 1.08996 * 109.46755 * 299.99629 * 3 2 1 32 32 H 0.96994 * 119.99746 * 185.27261 * 8 7 5 33 33 H 1.08994 * 109.46885 * 65.09014 * 15 13 4 34 34 H 1.09001 * 109.47317 * 305.08715 * 15 13 4 35 35 H 1.09003 * 109.47097 * 210.00120 * 18 17 16 36 36 H 1.09004 * 109.47190 * 329.99724 * 18 17 16 37 37 H 1.08999 * 109.46567 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47420 * 299.99845 * 19 18 17 39 39 H 1.08996 * 109.47282 * 60.00567 * 19 18 17 40 40 H 1.09006 * 109.46489 * 29.95657 * 23 22 21 41 41 H 1.09000 * 109.47572 * 149.95457 * 23 22 21 42 42 H 1.09007 * 109.46713 * 299.99670 * 24 23 22 43 43 H 1.09000 * 109.47488 * 59.99167 * 24 23 22 44 44 H 1.09000 * 109.47052 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4426 1.1881 6 1 5.1061 0.8785 1.2833 7 6 3.7057 2.1685 2.2695 8 7 2.8500 3.1466 2.0740 9 14 4.2710 1.7542 4.0011 10 1 5.4827 2.5474 4.3293 11 1 3.1899 2.0796 4.9658 12 1 4.5896 0.3062 4.0846 13 6 4.1794 1.4422 -1.1663 14 8 3.5772 1.5395 -2.2148 15 6 5.6815 1.3212 -1.1685 16 6 6.1955 1.4717 -2.5772 17 6 6.5813 2.6589 -3.2408 18 6 6.5579 4.0565 -2.6776 19 6 7.8997 4.3588 -2.0076 20 7 6.9612 2.3056 -4.4348 21 8 6.8683 1.1107 -4.5961 22 6 6.4007 0.5001 -3.4984 23 6 6.1532 -0.9760 -3.3232 24 6 4.7196 -1.3062 -3.7436 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 2.5706 3.7024 2.8182 33 1 5.9678 0.3440 -0.7797 34 1 6.1099 2.1021 -0.5401 35 1 6.3851 4.7700 -3.4833 36 1 5.7577 4.1384 -1.9420 37 1 7.8825 5.3696 -1.5999 38 1 8.0725 3.6454 -1.2019 39 1 8.6998 4.2770 -2.7432 40 1 6.8521 -1.5377 -3.9431 41 1 6.2967 -1.2470 -2.2772 42 1 4.0207 -0.7445 -3.1237 43 1 4.5762 -1.0353 -4.7896 44 1 4.5405 -2.3739 -3.6164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087161050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:51 Heat of formation + Delta-G solvation = -1.916076 kcal Electronic energy + Delta-G solvation = -25030.672377 eV Core-core repulsion = 21564.695940 eV Total energy + Delta-G solvation = -3465.976437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.43341 -38.65654 -35.68011 -34.89135 -34.44381 -32.86647 -31.54699 -31.21266 -30.16908 -28.08068 -25.73841 -24.46315 -24.25635 -23.29533 -21.52387 -20.51470 -19.41457 -19.03488 -17.21438 -16.90321 -16.31508 -15.89070 -15.01748 -14.66742 -14.48477 -14.23549 -13.87594 -13.86526 -13.71372 -13.35548 -12.79970 -12.64502 -12.56936 -12.24086 -12.10321 -11.87815 -11.55898 -11.50647 -11.37464 -11.24888 -11.06715 -11.01275 -10.96010 -10.84723 -10.62791 -10.43088 -10.34309 -10.28142 -9.76688 -9.43634 -9.16682 -8.78005 -8.32068 -7.49568 -6.41812 -4.11891 1.93705 2.70333 3.05313 3.16616 3.19182 3.53299 3.85358 4.06695 4.56738 4.78996 4.81499 4.96449 5.22028 5.30907 5.41577 5.44784 5.53713 5.54471 5.66500 5.75524 5.80278 5.82811 5.95567 5.98834 6.05258 6.10118 6.15601 6.26834 6.28310 6.34361 6.40981 6.44685 6.48288 6.52169 6.58053 6.67281 6.71284 6.78775 7.10896 7.31496 7.48854 7.93140 8.32800 8.74237 9.02751 9.49098 9.92480 10.59550 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005938 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.008316 B = 4714.494946 C = 5827.964966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.112 3.888 4 N -0.439 5.439 5 C -0.344 4.344 6 H 0.088 0.912 7 C 0.047 3.953 8 N -0.859 5.859 9 Si 0.911 3.089 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.475 3.525 14 O -0.596 6.596 15 C -0.049 4.049 16 C -0.154 4.154 17 C 0.037 3.963 18 C -0.046 4.046 19 C -0.142 4.142 20 N -0.377 5.377 21 O 0.088 5.912 22 C -0.034 4.034 23 C -0.034 4.034 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.271 0.729 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -4.976 -3.275 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.011 4.011 4 N -0.157 5.157 5 C -0.472 4.472 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.495 5.495 9 Si 0.738 3.262 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.263 3.737 14 O -0.482 6.482 15 C -0.089 4.089 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.085 4.085 19 C -0.200 4.200 20 N -0.084 5.084 21 O 0.024 5.976 22 C -0.097 4.097 23 C -0.073 4.073 24 C -0.209 4.209 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.786 -4.161 -4.716 7.903 hybrid contribution -0.057 -0.278 1.755 1.778 sum 4.729 -4.439 -2.961 7.130 Atomic orbital electron populations 1.21658 0.96643 1.00403 1.01411 1.21822 0.94654 0.99501 1.01101 1.21452 0.81547 0.94494 1.03651 1.43405 1.04640 1.63310 1.04336 1.19373 1.09372 1.30326 0.88079 0.89420 1.25358 0.96384 0.94071 1.00148 1.69831 1.31982 1.15133 1.32567 0.86179 0.78462 0.79306 0.82276 1.20213 1.20712 1.19287 1.20158 0.88426 0.80811 0.84271 1.90541 1.70169 1.55444 1.32020 1.19739 0.95174 1.03934 0.90048 1.20565 1.05217 0.91282 0.98720 1.23295 1.00346 0.98111 0.90463 1.19912 0.99467 0.88854 1.00227 1.21695 0.95995 1.01827 1.00527 1.73719 1.21905 0.93355 1.19399 1.84695 1.63098 1.14443 1.35332 1.24051 1.01687 0.97407 0.86560 1.20004 0.98701 0.85467 1.03088 1.21795 0.95408 1.01326 1.02362 0.93660 0.92969 0.93191 0.93266 0.92281 0.87615 0.92827 0.91897 0.89349 0.88203 0.90624 0.89131 0.91848 0.92150 0.92909 0.90231 0.89042 0.90533 0.92606 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.11 2.60 5.04 -4.04 -0.02 2.58 16 4 N -0.44 -10.47 2.52 -114.81 -0.29 -10.76 16 5 C -0.34 -8.16 8.54 -14.93 -0.13 -8.29 16 6 H 0.09 1.96 7.21 -52.49 -0.38 1.58 16 7 C 0.05 1.12 4.99 -17.46 -0.09 1.03 16 8 N -0.86 -21.77 11.34 55.50 0.63 -21.14 16 9 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 13 C 0.47 10.95 7.61 -10.99 -0.08 10.87 16 14 O -0.60 -15.15 14.67 5.54 0.08 -15.07 16 15 C -0.05 -0.94 4.64 -29.03 -0.13 -1.07 16 16 C -0.15 -2.88 4.82 -104.42 -0.50 -3.38 16 17 C 0.04 0.69 6.58 -82.10 -0.54 0.15 16 18 C -0.05 -0.77 6.44 -27.88 -0.18 -0.95 16 19 C -0.14 -1.95 9.89 37.16 0.37 -1.58 16 20 N -0.38 -7.20 12.07 33.42 0.40 -6.80 16 21 O 0.09 1.59 11.20 17.20 0.19 1.78 16 22 C -0.03 -0.58 6.74 -35.30 -0.24 -0.82 16 23 C -0.03 -0.46 6.35 -27.88 -0.18 -0.64 16 24 C -0.15 -2.13 9.89 37.16 0.37 -1.77 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.11 2.62 5.43 -51.93 -0.28 2.33 16 31 H 0.05 1.31 7.36 -51.93 -0.38 0.93 16 32 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 33 H 0.09 1.52 7.32 -51.93 -0.38 1.14 16 34 H 0.10 1.91 7.87 -51.93 -0.41 1.50 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.13 7.43 -51.93 -0.39 0.74 16 42 H 0.08 1.35 7.20 -51.93 -0.37 0.98 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -28.53 364.45 -6.90 -35.43 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.22 Total: 6.24 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.74 Total: -38.70 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.27 Total: -13.28 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.53 -6.90 -35.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087161050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.511 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds