Wall clock time and date at job start Tue Mar 31 2020 06:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 N 1.46499 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00320 * 270.00289 * 4 3 2 6 6 H 1.08000 * 120.00694 * 142.90340 * 5 4 3 7 7 C 1.38958 * 119.99866 * 322.90781 * 5 4 3 8 8 N 1.31415 * 119.99728 * 339.85062 * 7 5 4 9 9 Si 1.86798 * 120.00226 * 159.85556 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99545 * 9 7 5 11 11 H 1.48499 * 109.46959 * 209.99890 * 9 7 5 12 12 H 1.48501 * 109.47156 * 329.99661 * 9 7 5 13 13 C 1.34779 * 119.99994 * 89.99561 * 4 3 2 14 14 O 1.21301 * 119.99745 * 5.32367 * 13 4 3 15 15 C 1.50699 * 120.00175 * 185.32169 * 13 4 3 16 16 C 1.50701 * 109.46805 * 185.09050 * 15 13 4 17 17 C 1.41377 * 128.00484 * 90.00438 * 16 15 13 18 18 C 1.50697 * 126.80531 * 359.75258 * 17 16 15 19 19 C 1.53001 * 109.47070 * 90.00157 * 18 17 16 20 20 N 1.30180 * 106.39490 * 179.73459 * 17 16 15 21 21 O 1.20926 * 111.60059 * 359.97438 * 20 17 16 22 22 C 1.34031 * 111.57029 * 0.02562 * 21 20 17 23 23 C 1.50702 * 126.78037 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47217 * 269.96239 * 23 22 21 25 25 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47184 * 300.00597 * 1 2 3 27 27 H 1.09002 * 109.46671 * 60.00164 * 1 2 3 28 28 H 1.08999 * 109.47184 * 239.99403 * 2 1 3 29 29 H 1.09002 * 109.46671 * 119.99836 * 2 1 3 30 30 H 1.08999 * 109.47004 * 59.99731 * 3 2 1 31 31 H 1.08996 * 109.46755 * 299.99629 * 3 2 1 32 32 H 0.96994 * 119.99746 * 185.27261 * 8 7 5 33 33 H 1.08994 * 109.46885 * 65.09014 * 15 13 4 34 34 H 1.09001 * 109.47317 * 305.08715 * 15 13 4 35 35 H 1.09003 * 109.47097 * 210.00120 * 18 17 16 36 36 H 1.09004 * 109.47190 * 329.99724 * 18 17 16 37 37 H 1.08999 * 109.46567 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47420 * 299.99845 * 19 18 17 39 39 H 1.08996 * 109.47282 * 60.00567 * 19 18 17 40 40 H 1.09006 * 109.46489 * 29.95657 * 23 22 21 41 41 H 1.09000 * 109.47572 * 149.95457 * 23 22 21 42 42 H 1.09007 * 109.46713 * 299.99670 * 24 23 22 43 43 H 1.09000 * 109.47488 * 59.99167 * 24 23 22 44 44 H 1.09000 * 109.47052 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4426 1.1881 6 1 5.1061 0.8785 1.2833 7 6 3.7057 2.1685 2.2695 8 7 2.8500 3.1466 2.0740 9 14 4.2710 1.7542 4.0011 10 1 5.4827 2.5474 4.3293 11 1 3.1899 2.0796 4.9658 12 1 4.5896 0.3062 4.0846 13 6 4.1794 1.4422 -1.1663 14 8 3.5772 1.5395 -2.2148 15 6 5.6815 1.3212 -1.1685 16 6 6.1955 1.4717 -2.5772 17 6 6.5813 2.6589 -3.2408 18 6 6.5579 4.0565 -2.6776 19 6 7.8997 4.3588 -2.0076 20 7 6.9612 2.3056 -4.4348 21 8 6.8683 1.1107 -4.5961 22 6 6.4007 0.5001 -3.4984 23 6 6.1532 -0.9760 -3.3232 24 6 4.7196 -1.3062 -3.7436 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 2.5706 3.7024 2.8182 33 1 5.9678 0.3440 -0.7797 34 1 6.1099 2.1021 -0.5401 35 1 6.3851 4.7700 -3.4833 36 1 5.7577 4.1384 -1.9420 37 1 7.8825 5.3696 -1.5999 38 1 8.0725 3.6454 -1.2019 39 1 8.6998 4.2770 -2.7432 40 1 6.8521 -1.5377 -3.9431 41 1 6.2967 -1.2470 -2.2772 42 1 4.0207 -0.7445 -3.1237 43 1 4.5762 -1.0353 -4.7896 44 1 4.5405 -2.3739 -3.6164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087161050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:51 Heat of formation + Delta-G solvation = -15.649037 kcal Electronic energy + Delta-G solvation = -25031.267883 eV Core-core repulsion = 21564.695940 eV Total energy + Delta-G solvation = -3466.571943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.85469 -40.46356 -37.27330 -36.47807 -35.73348 -34.51766 -33.23348 -32.65062 -31.54161 -29.56811 -27.46715 -26.18004 -25.51766 -24.50702 -23.01622 -22.10712 -20.98100 -20.62053 -18.78058 -18.47458 -17.83465 -17.64424 -16.62042 -16.17900 -16.10387 -15.73790 -15.45277 -15.21657 -15.06513 -14.64363 -14.33472 -14.21441 -13.82101 -13.65181 -13.44462 -13.36373 -13.21763 -13.03022 -12.79874 -12.64473 -12.57675 -12.36817 -12.33082 -12.26397 -12.07705 -12.03302 -11.91632 -11.62882 -11.48586 -11.01837 -10.83711 -10.39542 -9.94791 -9.36607 -8.24499 -6.00601 0.55425 1.25263 1.44745 1.52660 1.62364 2.07447 2.21986 2.36378 3.03635 3.14456 3.24250 3.52080 3.91980 4.03920 4.13567 4.18630 4.30193 4.31325 4.33429 4.36443 4.43766 4.49545 4.51658 4.63558 4.69702 4.84154 4.87037 4.92463 4.95216 4.98642 4.99418 5.10187 5.11162 5.14329 5.16487 5.23795 5.29891 5.40352 5.42594 5.50457 5.63800 6.10772 6.47914 7.17983 7.33927 7.66103 8.09835 8.77935 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005938 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.008316 B = 4714.494946 C = 5827.964966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.113 3.887 4 N -0.450 5.450 5 C -0.354 4.354 6 H 0.103 0.897 7 C 0.006 3.994 8 N -0.895 5.895 9 Si 0.978 3.022 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.258 1.258 13 C 0.467 3.533 14 O -0.626 6.626 15 C -0.034 4.034 16 C -0.182 4.182 17 C 0.025 3.975 18 C -0.047 4.047 19 C -0.134 4.134 20 N -0.394 5.394 21 O 0.086 5.914 22 C -0.021 4.021 23 C -0.035 4.035 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.271 0.729 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -6.778 -2.504 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.011 4.011 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.120 0.880 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.802 3.198 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.181 1.181 13 C 0.257 3.743 14 O -0.514 6.514 15 C -0.074 4.074 16 C -0.187 4.187 17 C -0.133 4.133 18 C -0.085 4.085 19 C -0.192 4.192 20 N -0.102 5.102 21 O 0.024 5.976 22 C -0.085 4.085 23 C -0.073 4.073 24 C -0.204 4.204 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.002 -5.976 -3.949 9.345 hybrid contribution -0.477 0.296 1.438 1.544 sum 5.525 -5.679 -2.511 8.312 Atomic orbital electron populations 1.21617 0.94060 1.02302 1.01490 1.21697 0.96884 0.96753 1.00627 1.21391 0.81836 0.96408 1.01417 1.43660 1.04931 1.63334 1.04886 1.19757 1.09892 1.30423 0.88040 0.87951 1.26170 0.96396 0.93580 1.03601 1.69954 1.33443 1.16252 1.33583 0.85153 0.77777 0.79487 0.77374 1.19707 1.21243 1.18136 1.20796 0.90057 0.79928 0.83561 1.90513 1.71247 1.56653 1.32992 1.19585 0.92092 1.05008 0.90732 1.20634 1.06964 0.92024 0.99056 1.23676 1.00059 0.99081 0.90526 1.19961 1.00420 0.88197 0.99953 1.21646 0.94299 1.02859 1.00354 1.73697 1.23014 0.93930 1.19568 1.84668 1.63075 1.14223 1.35646 1.24722 0.99384 0.98871 0.85478 1.20267 0.98932 0.83232 1.04850 1.21732 0.94826 1.02660 1.01142 0.90800 0.92788 0.93258 0.93916 0.92315 0.89245 0.95414 0.91925 0.87117 0.88410 0.90124 0.91295 0.89959 0.92318 0.92258 0.86647 0.87565 0.94606 0.93036 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.12 -4.77 6.26 30.59 0.19 -4.57 16 3 C 0.11 5.40 5.04 86.38 0.44 5.83 16 4 N -0.45 -21.81 2.52 -635.53 -1.60 -23.42 16 5 C -0.35 -16.68 8.54 84.04 0.72 -15.96 16 6 H 0.10 4.43 7.21 -2.91 -0.02 4.41 16 7 C 0.01 0.26 4.99 84.93 0.42 0.69 16 8 N -0.89 -46.07 11.34 21.67 0.25 -45.82 16 9 Si 0.98 37.18 29.60 68.60 2.03 39.21 16 10 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.29 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 13 C 0.47 21.91 7.61 87.66 0.67 22.58 16 14 O -0.63 -32.89 14.67 -3.09 -0.05 -32.94 16 15 C -0.03 -1.30 4.64 29.10 0.14 -1.17 16 16 C -0.18 -6.79 4.82 -19.74 -0.10 -6.88 16 17 C 0.03 0.95 6.58 43.58 0.29 1.23 16 18 C -0.05 -1.57 6.44 29.85 0.19 -1.38 16 19 C -0.13 -3.55 9.89 71.98 0.71 -2.84 16 20 N -0.39 -14.97 12.07 -49.55 -0.60 -15.57 16 21 O 0.09 3.04 11.20 71.72 0.80 3.84 16 22 C -0.02 -0.70 6.74 25.04 0.17 -0.53 16 23 C -0.03 -0.85 6.35 29.85 0.19 -0.66 16 24 C -0.15 -3.89 9.89 71.98 0.71 -3.17 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 30 H 0.09 4.57 5.43 -2.39 -0.01 4.56 16 31 H 0.03 1.42 7.36 -2.39 -0.02 1.40 16 32 H 0.27 13.22 8.32 -92.71 -0.77 12.44 16 33 H 0.11 3.65 7.32 -2.39 -0.02 3.63 16 34 H 0.10 3.74 7.87 -2.39 -0.02 3.72 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.11 2.29 7.43 -2.39 -0.02 2.27 16 42 H 0.03 1.25 7.20 -2.38 -0.02 1.23 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.83 364.45 7.26 -55.57 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.97 Total: 29.61 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.45 Total: -10.48 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -1.96 Total: -84.81 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.76 Total: -29.10 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -62.83 7.26 -55.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087161050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.918 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds