Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 N 1.46496 * 109.46628 * 119.99611 * 2 1 3 5 5 C 1.46502 * 120.00138 * 299.99998 * 4 2 1 6 6 C 1.34781 * 120.00433 * 120.00406 * 4 2 1 7 7 O 1.21284 * 119.99168 * 359.97438 * 6 4 2 8 8 C 1.50697 * 120.00731 * 179.97438 * 6 4 2 9 9 N 1.46899 * 109.47074 * 185.89321 * 8 6 4 10 10 C 1.46888 * 111.00173 * 71.99183 * 9 8 6 11 11 C 1.50702 * 109.47259 * 189.99851 * 10 9 8 12 12 H 1.08001 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00334 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00228 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47467 * 89.99783 * 15 13 11 17 17 H 1.48498 * 109.47131 * 210.00071 * 15 13 11 18 18 H 1.48507 * 109.46627 * 329.99728 * 15 13 11 19 19 C 1.46902 * 110.99563 * 195.94629 * 9 8 6 20 20 C 1.50698 * 109.47572 * 76.14122 * 19 9 8 21 21 C 1.34513 * 125.78979 * 84.42444 * 20 19 9 22 22 C 1.41381 * 106.84238 * 180.02562 * 21 20 19 23 23 C 1.34522 * 106.83961 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78979 * 264.12463 * 20 19 9 25 25 H 1.08996 * 109.47516 * 300.00409 * 1 2 3 26 26 H 1.09005 * 109.46703 * 60.00335 * 1 2 3 27 27 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47516 * 239.99591 * 2 1 3 29 29 H 1.09003 * 109.47563 * 59.99735 * 3 2 1 30 30 H 1.09008 * 109.47082 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47122 * 299.99409 * 3 2 1 32 32 H 1.09005 * 109.47451 * 270.00042 * 5 4 2 33 33 H 1.08992 * 109.47352 * 30.00160 * 5 4 2 34 34 H 1.09009 * 109.47283 * 150.00596 * 5 4 2 35 35 H 1.08994 * 109.46945 * 65.88553 * 8 6 4 36 36 H 1.09002 * 109.46679 * 305.89275 * 8 6 4 37 37 H 1.09000 * 109.47261 * 310.00021 * 10 9 8 38 38 H 1.09007 * 109.47472 * 69.99845 * 10 9 8 39 39 H 0.97003 * 120.00342 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.47084 * 316.13866 * 19 9 8 41 41 H 1.09004 * 109.47280 * 196.14458 * 19 9 8 42 42 H 1.08000 * 126.57890 * 0.03760 * 21 20 19 43 43 H 1.07996 * 126.58096 * 179.97438 * 22 21 20 44 44 H 1.08002 * 125.78644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.6642 -0.1899 2.5268 6 6 2.7931 -1.7864 1.0728 7 8 3.0858 -2.2010 -0.0288 8 6 3.2958 -2.4964 2.3033 9 7 4.2246 -3.5636 1.9077 10 6 5.4982 -3.0048 1.4352 11 6 6.3267 -4.0990 0.8128 12 1 5.9451 -5.1085 0.7719 13 6 7.5720 -3.8113 0.2955 14 7 8.0366 -2.5819 0.3448 15 14 8.5987 -5.1674 -0.4766 16 1 8.2911 -5.2567 -1.9266 17 1 10.0404 -4.8615 -0.2944 18 1 8.2809 -6.4622 0.1775 19 6 4.4414 -4.5086 3.0114 20 6 3.2420 -5.4114 3.1427 21 6 3.0234 -6.5365 2.4386 22 6 1.7874 -7.0623 2.8798 23 6 1.3243 -6.2267 3.8269 24 8 2.2128 -5.2323 3.9867 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 2.4156 0.5276 2.8569 33 1 0.6903 0.2975 2.4843 34 1 1.6236 -1.0224 3.2293 35 1 2.4534 -2.9292 2.8426 36 1 3.8128 -1.7851 2.9474 37 1 5.3023 -2.2306 0.6933 38 1 6.0399 -2.5728 2.2767 39 1 8.9125 -2.3794 -0.0194 40 1 4.5837 -3.9559 3.9401 41 1 5.3276 -5.1092 2.8067 42 1 3.6684 -6.9574 1.6815 43 1 1.3068 -7.9616 2.5241 44 1 0.3981 -6.3398 4.3709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096970618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -6.639222 kcal Electronic energy + Delta-G solvation = -24542.944325 eV Core-core repulsion = 21076.763077 eV Total energy + Delta-G solvation = -3466.181248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14718 -39.64997 -36.83271 -35.62385 -32.64909 -32.61716 -32.22239 -30.15047 -28.00981 -27.20722 -26.71653 -26.23934 -24.05821 -21.81761 -21.33970 -20.61904 -19.77359 -18.58405 -17.14812 -16.73194 -16.48960 -15.87459 -15.58434 -15.25670 -14.71749 -14.36824 -14.07674 -13.92220 -13.62850 -13.20394 -12.97938 -12.77365 -12.52352 -12.43985 -12.35029 -12.24398 -12.04776 -11.91720 -11.80843 -11.65139 -11.24900 -11.18858 -11.00289 -10.75771 -10.61326 -10.53841 -9.91645 -9.52909 -9.29989 -9.03771 -8.41684 -8.35474 -8.05879 -7.34049 -5.97648 -3.97902 2.10306 3.01921 3.20178 3.24099 3.36835 3.38514 3.43027 3.45798 4.47077 4.75452 4.95851 5.10492 5.11269 5.15445 5.23756 5.33275 5.38608 5.39675 5.43435 5.47821 5.54125 5.62200 5.69220 5.73196 5.76965 5.78780 5.95070 5.98120 6.18297 6.23244 6.27137 6.28140 6.40964 6.54589 6.81755 6.91880 7.17238 7.25468 7.57155 7.66399 7.83127 8.08693 8.15209 8.50301 8.78470 9.07668 9.65139 11.13590 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.006343 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.594926 B = 4413.596724 C = 6752.168178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.624 5.624 5 C 0.081 3.919 6 C 0.515 3.485 7 O -0.499 6.499 8 C 0.040 3.960 9 N -0.513 5.513 10 C 0.196 3.804 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.139 3.861 20 C 0.009 3.991 21 C -0.196 4.196 22 C -0.211 4.211 23 C -0.063 4.063 24 O -0.185 6.185 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.045 0.955 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.039 0.961 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 3.035 7.209 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.362 5.362 5 C -0.063 4.063 6 C 0.302 3.698 7 O -0.371 6.371 8 C -0.092 4.092 9 N -0.239 5.239 10 C 0.072 3.928 11 C -0.542 4.542 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.198 1.198 19 C 0.011 3.989 20 C -0.041 4.041 21 C -0.216 4.216 22 C -0.231 4.231 23 C -0.130 4.130 24 O -0.082 6.082 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.432 2.889 6.352 16.936 hybrid contribution 0.737 -0.310 0.148 0.813 sum -14.695 2.579 6.500 16.274 Atomic orbital electron populations 1.22132 0.95497 1.02225 1.01833 1.20956 0.93498 0.93024 0.89786 1.22125 1.02103 0.95763 1.01742 1.47976 1.52685 1.29141 1.06406 1.21679 1.00511 0.99932 0.84181 1.20729 0.77671 0.79568 0.91791 1.90736 1.54826 1.63984 1.27515 1.21952 0.98203 0.94861 0.94166 1.61773 1.15838 1.14554 1.31692 1.19831 0.82253 0.96133 0.94612 1.21090 0.99939 0.95232 1.37934 0.91787 1.24954 0.97787 0.95584 0.96133 1.69958 1.18814 1.18541 1.46478 0.86507 0.79062 0.82051 0.79845 1.20647 1.21408 1.19812 1.20565 0.91394 0.93784 0.93174 1.22833 0.90508 0.98159 0.92614 1.21582 0.98756 0.97661 1.03615 1.21808 0.97889 1.02388 1.00990 1.23808 0.96030 0.89974 1.03193 1.83979 1.27564 1.44451 1.52179 0.92590 0.91714 0.92356 0.88127 0.92676 0.92040 0.91788 0.92933 0.91383 0.91243 0.89335 0.92869 0.93723 0.99223 0.92996 0.94241 0.86008 0.83447 0.84082 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.17 37.16 0.34 -1.33 16 2 C 0.13 1.77 3.25 -67.93 -0.22 1.54 16 3 C -0.16 -1.82 9.19 37.15 0.34 -1.48 16 4 N -0.62 -9.33 2.76 -173.93 -0.48 -9.81 16 5 C 0.08 0.87 9.19 59.85 0.55 1.42 16 6 C 0.52 10.08 7.19 -10.98 -0.08 10.00 16 7 O -0.50 -12.18 14.54 5.55 0.08 -12.10 16 8 C 0.04 0.74 3.75 -4.98 -0.02 0.72 16 9 N -0.51 -11.38 4.01 -238.97 -0.96 -12.34 16 10 C 0.20 5.18 4.36 -4.98 -0.02 5.16 16 11 C -0.50 -14.30 8.23 -34.44 -0.28 -14.58 16 12 H 0.06 1.79 7.32 -52.49 -0.38 1.41 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 15 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.14 2.69 5.34 -4.98 -0.03 2.66 16 20 C 0.01 0.17 6.16 -35.63 -0.22 -0.05 16 21 C -0.20 -3.43 10.81 -39.70 -0.43 -3.86 16 22 C -0.21 -3.08 10.91 -39.70 -0.43 -3.51 16 23 C -0.06 -0.84 12.09 29.42 0.36 -0.48 16 24 O -0.19 -2.98 10.27 5.72 0.06 -2.92 16 25 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.10 1.65 6.90 -51.93 -0.36 1.30 16 29 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 34 H 0.07 0.70 6.60 -51.92 -0.34 0.36 16 35 H 0.09 1.48 6.60 -51.93 -0.34 1.14 16 36 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 37 H 0.04 1.33 6.55 -51.93 -0.34 0.99 16 38 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.70 7.99 -51.93 -0.42 0.28 16 41 H 0.12 2.52 6.58 -51.93 -0.34 2.18 16 42 H 0.15 2.61 8.06 -52.49 -0.42 2.18 16 43 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -34.21 359.28 -7.36 -41.57 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.95 Total: 1.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.24 Total: -2.26 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.70 Total: -48.50 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.14 Total: -15.02 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.21 -7.36 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096970618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.931 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds