Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 N 1.46496 * 109.46628 * 119.99611 * 2 1 3 5 5 C 1.46502 * 120.00138 * 299.99998 * 4 2 1 6 6 C 1.34781 * 120.00433 * 120.00406 * 4 2 1 7 7 O 1.21284 * 119.99168 * 359.97438 * 6 4 2 8 8 C 1.50697 * 120.00731 * 179.97438 * 6 4 2 9 9 N 1.46899 * 109.47074 * 185.89321 * 8 6 4 10 10 C 1.46888 * 111.00173 * 71.99183 * 9 8 6 11 11 C 1.50702 * 109.47259 * 189.99851 * 10 9 8 12 12 H 1.08001 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00334 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00228 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47467 * 89.99783 * 15 13 11 17 17 H 1.48498 * 109.47131 * 210.00071 * 15 13 11 18 18 H 1.48507 * 109.46627 * 329.99728 * 15 13 11 19 19 C 1.46902 * 110.99563 * 195.94629 * 9 8 6 20 20 C 1.50698 * 109.47572 * 76.14122 * 19 9 8 21 21 C 1.34513 * 125.78979 * 84.42444 * 20 19 9 22 22 C 1.41381 * 106.84238 * 180.02562 * 21 20 19 23 23 C 1.34522 * 106.83961 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78979 * 264.12463 * 20 19 9 25 25 H 1.08996 * 109.47516 * 300.00409 * 1 2 3 26 26 H 1.09005 * 109.46703 * 60.00335 * 1 2 3 27 27 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47516 * 239.99591 * 2 1 3 29 29 H 1.09003 * 109.47563 * 59.99735 * 3 2 1 30 30 H 1.09008 * 109.47082 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47122 * 299.99409 * 3 2 1 32 32 H 1.09005 * 109.47451 * 270.00042 * 5 4 2 33 33 H 1.08992 * 109.47352 * 30.00160 * 5 4 2 34 34 H 1.09009 * 109.47283 * 150.00596 * 5 4 2 35 35 H 1.08994 * 109.46945 * 65.88553 * 8 6 4 36 36 H 1.09002 * 109.46679 * 305.89275 * 8 6 4 37 37 H 1.09000 * 109.47261 * 310.00021 * 10 9 8 38 38 H 1.09007 * 109.47472 * 69.99845 * 10 9 8 39 39 H 0.97003 * 120.00342 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.47084 * 316.13866 * 19 9 8 41 41 H 1.09004 * 109.47280 * 196.14458 * 19 9 8 42 42 H 1.08000 * 126.57890 * 0.03760 * 21 20 19 43 43 H 1.07996 * 126.58096 * 179.97438 * 22 21 20 44 44 H 1.08002 * 125.78644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.6642 -0.1899 2.5268 6 6 2.7931 -1.7864 1.0728 7 8 3.0858 -2.2010 -0.0288 8 6 3.2958 -2.4964 2.3033 9 7 4.2246 -3.5636 1.9077 10 6 5.4982 -3.0048 1.4352 11 6 6.3267 -4.0990 0.8128 12 1 5.9451 -5.1085 0.7719 13 6 7.5720 -3.8113 0.2955 14 7 8.0366 -2.5819 0.3448 15 14 8.5987 -5.1674 -0.4766 16 1 8.2911 -5.2567 -1.9266 17 1 10.0404 -4.8615 -0.2944 18 1 8.2809 -6.4622 0.1775 19 6 4.4414 -4.5086 3.0114 20 6 3.2420 -5.4114 3.1427 21 6 3.0234 -6.5365 2.4386 22 6 1.7874 -7.0623 2.8798 23 6 1.3243 -6.2267 3.8269 24 8 2.2128 -5.2323 3.9867 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 2.4156 0.5276 2.8569 33 1 0.6903 0.2975 2.4843 34 1 1.6236 -1.0224 3.2293 35 1 2.4534 -2.9292 2.8426 36 1 3.8128 -1.7851 2.9474 37 1 5.3023 -2.2306 0.6933 38 1 6.0399 -2.5728 2.2767 39 1 8.9125 -2.3794 -0.0194 40 1 4.5837 -3.9559 3.9401 41 1 5.3276 -5.1092 2.8067 42 1 3.6684 -6.9574 1.6815 43 1 1.3068 -7.9616 2.5241 44 1 0.3981 -6.3398 4.3709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096970618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -29.906063 kcal Electronic energy + Delta-G solvation = -24543.953251 eV Core-core repulsion = 21076.763077 eV Total energy + Delta-G solvation = -3467.190174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37905 -41.06701 -38.36213 -37.12416 -34.74448 -33.85682 -33.44568 -31.55219 -29.85934 -28.10199 -27.89135 -27.66608 -25.85299 -23.47076 -22.59656 -21.95757 -21.11981 -19.87369 -18.62251 -18.46923 -17.99914 -17.28195 -16.97006 -16.64383 -16.43879 -15.82387 -15.58001 -15.29273 -14.96076 -14.59678 -14.22092 -14.10624 -13.87444 -13.80446 -13.67216 -13.52551 -13.30264 -13.17353 -13.02433 -12.93652 -12.84548 -12.71546 -12.52541 -12.43683 -12.22373 -11.99974 -11.76893 -11.35410 -10.77668 -10.67325 -10.59178 -9.61175 -9.33647 -9.08111 -8.19922 -6.28319 0.86929 1.38843 1.42159 1.52030 1.70007 1.78879 2.01508 2.15760 2.40530 3.13379 3.32581 3.64651 3.85823 4.01330 4.13204 4.17806 4.19446 4.24409 4.29126 4.31594 4.36467 4.51345 4.64872 4.70733 4.71607 4.73409 4.85867 4.93491 4.98603 5.04290 5.09459 5.14172 5.20929 5.24799 5.30782 5.34547 5.61251 5.70000 5.72807 6.00718 6.20979 6.30821 6.35932 6.56731 6.84688 7.33310 7.39729 8.91749 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.006343 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.594926 B = 4413.596724 C = 6752.168178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 C -0.151 4.151 4 N -0.616 5.616 5 C 0.071 3.929 6 C 0.506 3.494 7 O -0.564 6.564 8 C 0.045 3.955 9 N -0.530 5.530 10 C 0.219 3.781 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.281 1.281 17 H -0.278 1.278 18 H -0.260 1.260 19 C 0.144 3.856 20 C -0.014 4.014 21 C -0.212 4.212 22 C -0.227 4.227 23 C -0.038 4.038 24 O -0.188 6.188 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.004 0.996 38 H -0.029 1.029 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.168 0.832 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 2.872 8.909 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.209 4.209 4 N -0.351 5.351 5 C -0.071 4.071 6 C 0.294 3.706 7 O -0.441 6.441 8 C -0.086 4.086 9 N -0.255 5.255 10 C 0.093 3.907 11 C -0.557 4.557 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.207 1.207 17 H -0.203 1.203 18 H -0.184 1.184 19 C 0.017 3.983 20 C -0.064 4.064 21 C -0.232 4.232 22 C -0.245 4.245 23 C -0.105 4.105 24 O -0.085 6.085 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.022 0.978 38 H -0.011 1.011 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.185 0.815 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -18.029 2.757 8.102 19.957 hybrid contribution 1.388 -0.225 -0.324 1.443 sum -16.640 2.533 7.778 18.542 Atomic orbital electron populations 1.22045 0.92415 1.02016 1.04034 1.21136 0.95829 0.93454 0.87788 1.22065 1.00201 0.94605 1.04018 1.48074 1.50778 1.27510 1.08765 1.22023 1.02515 1.00704 0.81852 1.21005 0.77887 0.80628 0.91093 1.90700 1.57602 1.66295 1.29530 1.21985 0.98136 0.94351 0.94156 1.61581 1.14074 1.15942 1.33876 1.19316 0.83945 0.94604 0.92791 1.21399 1.00593 0.95558 1.38107 0.92067 1.25870 0.99082 0.98057 0.96528 1.70085 1.19352 1.20614 1.47420 0.85421 0.77499 0.79396 0.78537 1.20684 1.20333 1.18393 1.20338 0.91930 0.93301 0.92716 1.22333 0.91235 0.98397 0.94417 1.21759 1.00123 0.98013 1.03295 1.22110 0.96867 1.03885 1.01675 1.24806 0.96099 0.87814 1.01809 1.83965 1.27436 1.45437 1.51657 0.89943 0.89913 0.93748 0.92272 0.90050 0.94940 0.89822 0.91983 0.88050 0.90304 0.86925 0.91518 0.97831 1.01115 0.92773 0.92678 0.88206 0.84878 0.81491 0.73824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.17 71.98 0.66 -2.11 16 2 C 0.12 3.25 3.25 44.99 0.15 3.40 16 3 C -0.15 -3.30 9.19 71.98 0.66 -2.64 16 4 N -0.62 -18.24 2.76 -822.59 -2.27 -20.51 16 5 C 0.07 1.33 9.19 127.77 1.17 2.51 16 6 C 0.51 20.57 7.19 87.66 0.63 21.20 16 7 O -0.56 -29.54 14.54 -3.04 -0.04 -29.58 16 8 C 0.04 1.69 3.75 85.56 0.32 2.01 16 9 N -0.53 -24.52 4.01 -909.96 -3.64 -28.16 16 10 C 0.22 12.31 4.36 85.56 0.37 12.68 16 11 C -0.52 -30.85 8.23 25.60 0.21 -30.64 16 12 H 0.06 3.59 7.32 -2.91 -0.02 3.57 16 13 C 0.00 0.14 5.46 84.65 0.46 0.61 16 14 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 15 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 C 0.14 5.77 5.34 85.56 0.46 6.23 16 20 C -0.01 -0.49 6.16 24.83 0.15 -0.33 16 21 C -0.21 -7.39 10.81 22.19 0.24 -7.15 16 22 C -0.23 -6.05 10.91 22.19 0.24 -5.81 16 23 C -0.04 -0.89 12.09 66.97 0.81 -0.08 16 24 O -0.19 -5.62 10.27 -2.45 -0.03 -5.64 16 25 H 0.08 1.12 6.66 -2.39 -0.02 1.11 16 26 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 2.09 6.90 -2.39 -0.02 2.07 16 29 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 30 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 1.27 6.43 -2.39 -0.02 1.26 16 34 H 0.08 1.37 6.60 -2.38 -0.02 1.35 16 35 H 0.11 3.64 6.60 -2.39 -0.02 3.63 16 36 H 0.07 2.32 7.85 -2.39 -0.02 2.30 16 37 H 0.00 0.23 6.55 -2.39 -0.02 0.21 16 38 H -0.03 -1.67 8.12 -2.38 -0.02 -1.69 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.06 1.97 7.99 -2.38 -0.02 1.95 16 41 H 0.10 4.36 6.58 -2.39 -0.02 4.34 16 42 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.25 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -80.54 359.28 3.84 -76.69 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.98 Total: 17.06 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.54 Total: -0.13 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -5.63 Total: -106.81 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.07 Total: -35.23 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.54 3.84 -76.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096970618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.788 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds