Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53009 * 109.47122 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47122 * 66.84111 * 4 3 2 6 6 C 1.46497 * 120.00391 * 264.12042 * 5 4 3 7 7 C 1.50701 * 109.46845 * 270.00588 * 6 5 4 8 8 H 1.08004 * 120.00477 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99831 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00061 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47041 * 89.99676 * 11 9 7 13 13 H 1.48501 * 109.47502 * 210.00067 * 11 9 7 14 14 H 1.48496 * 109.47119 * 329.99908 * 11 9 7 15 15 C 1.34775 * 119.99737 * 84.12490 * 5 4 3 16 16 O 1.21698 * 120.00199 * 184.19841 * 15 5 4 17 17 C 1.46683 * 120.00415 * 4.19397 * 15 5 4 18 18 C 1.37872 * 126.22653 * 336.61871 * 17 15 5 19 19 C 1.39842 * 107.08160 * 180.02562 * 18 17 15 20 20 C 1.35454 * 107.86656 * 0.02562 * 19 18 17 21 21 N 1.35540 * 108.86934 * 359.97438 * 20 19 18 22 22 C 1.46498 * 125.67616 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47192 * 294.63066 * 22 21 20 24 24 C 1.53000 * 109.47116 * 54.62981 * 22 21 20 25 25 H 1.08997 * 109.46965 * 60.00023 * 1 2 3 26 26 H 1.08996 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47319 * 300.00327 * 1 2 3 28 28 H 1.08994 * 109.47527 * 59.99590 * 3 2 1 29 29 H 1.09004 * 109.47186 * 299.99392 * 3 2 1 30 30 H 1.09001 * 109.46531 * 306.84179 * 4 3 2 31 31 H 1.09001 * 109.47038 * 186.84600 * 4 3 2 32 32 H 1.09002 * 109.47089 * 29.99896 * 6 5 4 33 33 H 1.08990 * 109.47362 * 150.00418 * 6 5 4 34 34 H 0.96996 * 119.99689 * 180.02562 * 10 9 7 35 35 H 1.08002 * 126.46450 * 0.04570 * 18 17 15 36 36 H 1.07998 * 126.06325 * 180.26659 * 19 18 17 37 37 H 1.07995 * 125.56442 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46840 * 174.63003 * 22 21 20 39 39 H 1.08999 * 109.47226 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47062 * 299.99687 * 23 22 21 41 41 H 1.08998 * 109.47561 * 59.99741 * 23 22 21 42 42 H 1.09002 * 109.47140 * 64.78733 * 24 22 21 43 43 H 1.08998 * 109.47520 * 184.79487 * 24 22 21 44 44 H 1.08999 * 109.46942 * 304.79535 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9789 0.6048 -1.2708 6 6 4.2327 -0.8346 -1.3701 7 6 5.6734 -1.1153 -1.0285 8 1 6.3340 -0.3027 -0.7644 9 6 6.1482 -2.4095 -1.0533 10 7 5.3436 -3.3991 -1.3744 11 14 7.9341 -2.7575 -0.6306 12 1 8.0587 -3.0032 0.8285 13 1 8.3946 -3.9567 -1.3757 14 1 8.7690 -1.5891 -1.0088 15 6 4.1534 1.3957 -2.3481 16 8 4.4474 0.9048 -3.4222 17 6 3.9888 2.8481 -2.2261 18 6 3.2504 3.5067 -1.2660 19 6 3.3685 4.8760 -1.5245 20 6 4.1590 5.0265 -2.6141 21 7 4.5427 3.8018 -3.0498 22 6 5.4029 3.5370 -4.2057 23 6 4.6893 3.9797 -5.4846 24 6 6.7116 4.3154 -4.0565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 3.8493 0.5415 0.8216 31 1 3.9783 2.1731 0.1219 32 1 3.5841 -1.3667 -0.6742 33 1 4.0282 -1.1703 -2.3866 34 1 5.6776 -4.3096 -1.3914 35 1 2.6871 3.0511 -0.4650 36 1 2.9137 5.6722 -0.9540 37 1 4.4379 5.9686 -3.0624 38 1 5.6190 2.4701 -4.2610 39 1 5.3295 3.7832 -6.3446 40 1 3.7569 3.4252 -5.5910 41 1 4.4731 5.0466 -5.4294 42 1 7.2606 3.9408 -3.1925 43 1 7.3156 4.1865 -4.9546 44 1 6.4910 5.3735 -3.9158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121432934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -12.474744 kcal Electronic energy + Delta-G solvation = -24984.124171 eV Core-core repulsion = 21517.689875 eV Total energy + Delta-G solvation = -3466.434296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31607 -38.63955 -37.41463 -35.56799 -34.61096 -32.70534 -30.23347 -29.58148 -28.79390 -27.34133 -26.80616 -25.99536 -23.34655 -22.69769 -22.28948 -20.95762 -19.85847 -18.20043 -16.96716 -16.46362 -16.31943 -15.62653 -15.30759 -15.00031 -14.93383 -14.51666 -14.45213 -14.11078 -13.89786 -13.53686 -13.11692 -12.70132 -12.52117 -12.33495 -12.24363 -12.13989 -12.00082 -11.83164 -11.61015 -11.32201 -11.24638 -11.08831 -10.98303 -10.82387 -10.78739 -10.39631 -10.09164 -9.57341 -9.36620 -8.98798 -8.49334 -8.35702 -7.92901 -7.56856 -5.96736 -4.01303 1.97397 2.91588 3.02322 3.33794 3.39751 3.43868 3.91565 4.05833 4.09326 4.50101 4.68962 4.95677 5.00374 5.17549 5.20359 5.32111 5.37346 5.42442 5.46456 5.48653 5.53458 5.58605 5.62153 5.62799 5.67715 5.74672 5.80549 5.88960 5.90428 6.03603 6.11887 6.27308 6.31137 6.43750 6.98916 7.26454 7.32228 7.46483 7.51544 7.58079 7.63888 8.00797 8.31916 8.47531 8.94725 9.11702 9.62639 11.11148 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.006331 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.804566 B = 4421.286172 C = 6156.625674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.033 3.967 4 C 0.098 3.902 5 N -0.571 5.571 6 C 0.251 3.749 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.572 3.428 16 O -0.549 6.549 17 C -0.025 4.025 18 C -0.184 4.184 19 C -0.211 4.211 20 C 0.000 4.000 21 N -0.401 5.401 22 C 0.109 3.891 23 C -0.155 4.155 24 C -0.159 4.159 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 17.055 -0.157 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C -0.045 4.045 4 C -0.027 4.027 5 N -0.300 5.300 6 C 0.132 3.868 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.359 3.641 16 O -0.430 6.430 17 C -0.140 4.140 18 C -0.209 4.209 19 C -0.235 4.235 20 C -0.134 4.134 21 N -0.075 5.075 22 C 0.008 3.992 23 C -0.212 4.212 24 C -0.217 4.217 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.143 0.857 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.091 16.278 -1.055 17.088 hybrid contribution 0.699 0.117 0.324 0.779 sum -4.392 16.395 -0.731 16.988 Atomic orbital electron populations 1.22698 0.82028 1.02534 0.99221 1.88078 1.18743 1.27087 1.95174 1.23417 0.95441 0.85457 1.00137 1.21928 0.91146 1.00882 0.88711 1.47874 1.63443 1.10699 1.07993 1.19350 0.96034 0.72250 0.99128 1.21470 0.95689 0.92750 1.46671 0.92596 1.24913 0.97758 0.96034 0.95309 1.69951 1.35234 0.99621 1.48339 0.86533 0.85027 0.77778 0.78272 1.20628 1.21147 1.20039 1.17017 0.78437 0.83854 0.84764 1.90724 1.49714 1.75671 1.26857 1.20572 1.05969 0.90721 0.96720 1.22164 1.04247 0.93802 1.00687 1.20753 1.06006 0.96376 1.00364 1.21740 1.03536 0.88494 0.99662 1.44158 1.36172 1.05160 1.21989 1.21803 0.89344 1.04329 0.83725 1.22091 1.01589 1.01328 0.96219 1.22153 0.96212 1.00065 1.03269 0.94546 0.89820 0.94611 0.92732 0.92355 0.88891 0.88420 0.93689 0.93951 0.92808 0.82452 0.84646 0.82410 0.85652 0.90791 0.91636 0.92418 0.91706 0.90641 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.58 10.33 -35.23 -0.36 -6.94 16 3 C 0.03 0.50 4.48 37.16 0.17 0.67 16 4 C 0.10 1.72 5.31 -4.04 -0.02 1.70 16 5 N -0.57 -12.85 2.44 -176.60 -0.43 -13.28 16 6 C 0.25 6.84 5.17 -5.20 -0.03 6.82 16 7 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 11 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.57 12.86 7.47 -12.85 -0.10 12.77 16 16 O -0.55 -14.17 14.38 5.19 0.07 -14.09 16 17 C -0.03 -0.46 6.54 -81.98 -0.54 -0.99 16 18 C -0.18 -2.77 7.58 -39.12 -0.30 -3.07 16 19 C -0.21 -2.73 10.81 -39.98 -0.43 -3.16 16 20 C 0.00 0.00 10.27 -16.91 -0.17 -0.17 16 21 N -0.40 -6.28 2.64 -105.81 -0.28 -6.56 16 22 C 0.11 1.58 3.39 -67.93 -0.23 1.35 16 23 C -0.15 -1.83 9.30 37.16 0.35 -1.49 16 24 C -0.16 -1.83 9.23 37.16 0.34 -1.48 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.89 6.27 -51.93 -0.33 0.56 16 30 H 0.09 1.70 8.03 -51.93 -0.42 1.28 16 31 H 0.10 1.52 5.24 -51.93 -0.27 1.25 16 32 H 0.05 1.27 7.73 -51.93 -0.40 0.87 16 33 H 0.04 1.30 7.37 -51.93 -0.38 0.92 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.16 2.12 3.23 -52.49 -0.17 1.95 16 36 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.16 1.51 7.83 -52.49 -0.41 1.10 16 38 H 0.13 2.29 5.82 -51.93 -0.30 1.98 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -34.51 355.69 -7.03 -41.54 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.84 Total: 2.58 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.27 Total: 0.56 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.03 Total: -46.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.29 Total: -21.03 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.51 -7.03 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121432934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.060 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds