Wall clock time and date at job start Tue Mar 31 2020 06:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53009 * 109.47122 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47122 * 66.84111 * 4 3 2 6 6 C 1.46497 * 120.00391 * 264.12042 * 5 4 3 7 7 C 1.50701 * 109.46845 * 270.00588 * 6 5 4 8 8 H 1.08004 * 120.00477 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99831 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00061 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47041 * 89.99676 * 11 9 7 13 13 H 1.48501 * 109.47502 * 210.00067 * 11 9 7 14 14 H 1.48496 * 109.47119 * 329.99908 * 11 9 7 15 15 C 1.34775 * 119.99737 * 84.12490 * 5 4 3 16 16 O 1.21698 * 120.00199 * 184.19841 * 15 5 4 17 17 C 1.46683 * 120.00415 * 4.19397 * 15 5 4 18 18 C 1.37872 * 126.22653 * 336.61871 * 17 15 5 19 19 C 1.39842 * 107.08160 * 180.02562 * 18 17 15 20 20 C 1.35454 * 107.86656 * 0.02562 * 19 18 17 21 21 N 1.35540 * 108.86934 * 359.97438 * 20 19 18 22 22 C 1.46498 * 125.67616 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47192 * 294.63066 * 22 21 20 24 24 C 1.53000 * 109.47116 * 54.62981 * 22 21 20 25 25 H 1.08997 * 109.46965 * 60.00023 * 1 2 3 26 26 H 1.08996 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47319 * 300.00327 * 1 2 3 28 28 H 1.08994 * 109.47527 * 59.99590 * 3 2 1 29 29 H 1.09004 * 109.47186 * 299.99392 * 3 2 1 30 30 H 1.09001 * 109.46531 * 306.84179 * 4 3 2 31 31 H 1.09001 * 109.47038 * 186.84600 * 4 3 2 32 32 H 1.09002 * 109.47089 * 29.99896 * 6 5 4 33 33 H 1.08990 * 109.47362 * 150.00418 * 6 5 4 34 34 H 0.96996 * 119.99689 * 180.02562 * 10 9 7 35 35 H 1.08002 * 126.46450 * 0.04570 * 18 17 15 36 36 H 1.07998 * 126.06325 * 180.26659 * 19 18 17 37 37 H 1.07995 * 125.56442 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46840 * 174.63003 * 22 21 20 39 39 H 1.08999 * 109.47226 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47062 * 299.99687 * 23 22 21 41 41 H 1.08998 * 109.47561 * 59.99741 * 23 22 21 42 42 H 1.09002 * 109.47140 * 64.78733 * 24 22 21 43 43 H 1.08998 * 109.47520 * 184.79487 * 24 22 21 44 44 H 1.08999 * 109.46942 * 304.79535 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9789 0.6048 -1.2708 6 6 4.2327 -0.8346 -1.3701 7 6 5.6734 -1.1153 -1.0285 8 1 6.3340 -0.3027 -0.7644 9 6 6.1482 -2.4095 -1.0533 10 7 5.3436 -3.3991 -1.3744 11 14 7.9341 -2.7575 -0.6306 12 1 8.0587 -3.0032 0.8285 13 1 8.3946 -3.9567 -1.3757 14 1 8.7690 -1.5891 -1.0088 15 6 4.1534 1.3957 -2.3481 16 8 4.4474 0.9048 -3.4222 17 6 3.9888 2.8481 -2.2261 18 6 3.2504 3.5067 -1.2660 19 6 3.3685 4.8760 -1.5245 20 6 4.1590 5.0265 -2.6141 21 7 4.5427 3.8018 -3.0498 22 6 5.4029 3.5370 -4.2057 23 6 4.6893 3.9797 -5.4846 24 6 6.7116 4.3154 -4.0565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 3.8493 0.5415 0.8216 31 1 3.9783 2.1731 0.1219 32 1 3.5841 -1.3667 -0.6742 33 1 4.0282 -1.1703 -2.3866 34 1 5.6776 -4.3096 -1.3914 35 1 2.6871 3.0511 -0.4650 36 1 2.9137 5.6722 -0.9540 37 1 4.4379 5.9686 -3.0624 38 1 5.6190 2.4701 -4.2610 39 1 5.3295 3.7832 -6.3446 40 1 3.7569 3.4252 -5.5910 41 1 4.4731 5.0466 -5.4294 42 1 7.2606 3.9408 -3.1925 43 1 7.3156 4.1865 -4.9546 44 1 6.4910 5.3735 -3.9158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121432934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:54 Heat of formation + Delta-G solvation = -35.407620 kcal Electronic energy + Delta-G solvation = -24985.118615 eV Core-core repulsion = 21517.689875 eV Total energy + Delta-G solvation = -3467.428740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52822 -40.20916 -38.80458 -36.91020 -36.08669 -34.83371 -31.82782 -30.75921 -30.08128 -28.72435 -28.25010 -27.16396 -25.26108 -24.14670 -23.42340 -22.35409 -21.16402 -19.52851 -18.67818 -18.27036 -17.63907 -17.13678 -16.87070 -16.54325 -16.26679 -15.98033 -15.73950 -15.48906 -15.17838 -14.77797 -14.59536 -14.25928 -13.76593 -13.62637 -13.51790 -13.45122 -13.13321 -13.07634 -13.02897 -12.95824 -12.77414 -12.61862 -12.36475 -12.28065 -12.17427 -12.04516 -11.90706 -11.71106 -10.73977 -10.64679 -10.54421 -9.62535 -9.49114 -9.03868 -8.21837 -6.37918 0.65668 1.34189 1.37626 1.47803 1.72023 1.95781 2.31466 2.44878 2.51276 2.91822 3.06702 3.64182 3.66806 3.95571 4.09255 4.16714 4.20959 4.25345 4.40152 4.45288 4.48255 4.52457 4.54717 4.59444 4.59537 4.70208 4.73578 4.85973 4.89919 4.94362 5.01586 5.10737 5.17248 5.22685 5.25857 5.36709 5.54608 5.81217 5.98124 6.05741 6.09968 6.33747 6.47141 6.69389 6.75321 7.24686 7.41217 8.85367 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.006331 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.804566 B = 4421.286172 C = 6156.625674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.038 3.962 4 C 0.094 3.906 5 N -0.580 5.580 6 C 0.275 3.725 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.273 1.273 15 C 0.563 3.437 16 O -0.603 6.603 17 C -0.080 4.080 18 C -0.165 4.165 19 C -0.212 4.212 20 C 0.021 3.979 21 N -0.408 5.408 22 C 0.101 3.899 23 C -0.145 4.145 24 C -0.149 4.149 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.026 0.974 33 H -0.009 1.009 34 H 0.267 0.733 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.202 0.798 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 20.906 1.088 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.038 4.038 4 C -0.028 4.028 5 N -0.308 5.308 6 C 0.154 3.846 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.198 1.198 15 C 0.353 3.647 16 O -0.488 6.488 17 C -0.193 4.193 18 C -0.191 4.191 19 C -0.235 4.235 20 C -0.114 4.114 21 N -0.081 5.081 22 C 0.000 4.000 23 C -0.203 4.203 24 C -0.207 4.207 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.044 0.956 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.219 0.781 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.854 20.153 0.229 20.730 hybrid contribution 0.537 -1.012 -0.090 1.149 sum -4.316 19.141 0.138 19.622 Atomic orbital electron populations 1.22881 0.79838 1.03235 1.00929 1.88022 1.21343 1.28752 1.95543 1.23415 0.93187 0.85052 1.02177 1.22227 0.93481 1.01290 0.85847 1.47796 1.63968 1.08936 1.10142 1.18666 0.95139 0.75513 0.95300 1.21701 0.96407 0.93101 1.47201 0.93087 1.25892 1.02841 0.95622 0.94756 1.70084 1.37580 1.00166 1.48841 0.85381 0.78654 0.77619 0.78928 1.18648 1.20349 1.19791 1.17706 0.77153 0.86073 0.83722 1.90676 1.52157 1.77160 1.28758 1.20062 1.10418 0.88591 1.00210 1.22430 1.02308 0.94946 0.99438 1.21197 1.05824 0.95888 1.00578 1.22558 1.01403 0.88592 0.98872 1.44347 1.36234 1.05646 1.21922 1.21830 0.91260 1.02100 0.84838 1.22037 1.00256 1.02582 0.95394 1.22105 0.94318 1.01026 1.03234 0.94039 0.89834 0.91510 0.88042 0.92463 0.90156 0.85966 0.95558 0.99062 0.92373 0.81152 0.80882 0.78132 0.90828 0.89246 0.94365 0.89353 0.93778 0.88954 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.42 -14.98 10.33 -148.98 -1.54 -16.52 16 3 C 0.04 1.13 4.48 71.99 0.32 1.45 16 4 C 0.09 3.37 5.31 86.38 0.46 3.83 16 5 N -0.58 -27.85 2.44 -830.87 -2.03 -29.88 16 6 C 0.27 16.23 5.17 85.63 0.44 16.68 16 7 C -0.55 -33.44 9.39 25.60 0.24 -33.20 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.01 0.47 5.46 84.65 0.46 0.94 16 10 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 11 Si 0.97 46.62 29.54 68.60 2.03 48.64 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 15 C 0.56 27.11 7.47 86.45 0.65 27.76 16 16 O -0.60 -34.24 14.38 -4.34 -0.06 -34.30 16 17 C -0.08 -2.93 6.54 40.35 0.26 -2.66 16 18 C -0.17 -4.62 7.58 22.57 0.17 -4.44 16 19 C -0.21 -4.51 10.81 22.01 0.24 -4.27 16 20 C 0.02 0.44 10.27 83.48 0.86 1.30 16 21 N -0.41 -12.33 2.64 -488.68 -1.29 -13.61 16 22 C 0.10 2.94 3.39 44.99 0.15 3.09 16 23 C -0.15 -3.29 9.30 71.98 0.67 -2.62 16 24 C -0.15 -3.16 9.23 71.98 0.66 -2.50 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 2.04 8.13 -2.39 -0.02 2.02 16 29 H 0.06 1.70 6.27 -2.39 -0.01 1.68 16 30 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 31 H 0.12 3.70 5.24 -2.39 -0.01 3.69 16 32 H 0.03 1.62 7.73 -2.39 -0.02 1.60 16 33 H -0.01 -0.59 7.37 -2.39 -0.02 -0.61 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.17 4.14 3.23 -2.91 -0.01 4.13 16 36 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.20 2.52 7.83 -2.91 -0.02 2.49 16 38 H 0.07 2.93 5.82 -2.39 -0.01 2.91 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.44 8.02 -2.39 -0.02 1.42 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.36 7.50 -2.39 -0.02 1.34 16 Total: -1.00 -83.68 355.69 5.22 -78.46 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.98 Total: 18.31 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.84 Total: 7.30 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -3.03 Total: -101.89 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.60 Total: -50.82 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -83.68 5.22 -78.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121432934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.056 kcal (2) G-P(sol) polarization free energy of solvation -83.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds