Wall clock time and date at job start Tue Mar 31 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47260 * 2 1 4 4 N 1.46496 * 109.47232 * 179.97438 * 3 2 1 5 5 C 1.37089 * 120.00164 * 268.13636 * 4 3 2 6 6 H 1.08008 * 119.99906 * 138.62999 * 5 4 3 7 7 C 1.38953 * 120.00267 * 318.63411 * 5 4 3 8 8 N 1.31409 * 120.00066 * 340.28383 * 7 5 4 9 9 Si 1.86797 * 119.99899 * 160.28611 * 7 5 4 10 10 H 1.48501 * 109.47393 * 90.00209 * 9 7 5 11 11 H 1.48503 * 109.46963 * 209.99806 * 9 7 5 12 12 H 1.48494 * 109.47470 * 330.00052 * 9 7 5 13 13 C 1.34778 * 119.99559 * 88.14283 * 4 3 2 14 14 O 1.21296 * 119.99591 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00057 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.46822 * 180.02562 * 15 13 4 17 17 H 1.08997 * 109.47535 * 304.99728 * 16 15 13 18 18 C 1.52998 * 109.47135 * 64.99949 * 16 15 13 19 19 C 1.50703 * 109.47004 * 184.99936 * 16 15 13 20 20 C 1.41380 * 128.00551 * 305.47198 * 19 16 15 21 21 C 1.50696 * 126.80438 * 359.97438 * 20 19 16 22 22 N 1.30177 * 106.39549 * 179.97438 * 20 19 16 23 23 O 1.20928 * 111.60492 * 0.02562 * 22 20 19 24 24 C 1.34047 * 111.56461 * 359.76326 * 23 22 20 25 25 C 1.50695 * 126.77660 * 180.29149 * 24 23 22 26 26 H 1.08995 * 109.47474 * 60.00398 * 1 2 3 27 27 H 1.09002 * 109.46757 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47156 * 299.99618 * 1 2 3 29 29 H 1.09004 * 109.47332 * 240.00078 * 2 1 3 30 30 H 1.08999 * 109.47728 * 120.00051 * 2 1 3 31 31 H 1.09010 * 109.46509 * 60.00026 * 3 2 1 32 32 H 1.08999 * 109.46791 * 300.00624 * 3 2 1 33 33 H 0.96994 * 119.99766 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.47349 * 60.00517 * 15 13 4 35 35 H 1.09000 * 109.47157 * 299.99822 * 15 13 4 36 36 H 1.09006 * 109.47183 * 53.47333 * 18 16 15 37 37 H 1.09001 * 109.46992 * 173.47066 * 18 16 15 38 38 H 1.09003 * 109.47157 * 293.47047 * 18 16 15 39 39 H 1.09004 * 109.47368 * 93.31363 * 21 20 19 40 40 H 1.09004 * 109.47375 * 213.31323 * 21 20 19 41 41 H 1.08999 * 109.47004 * 333.31162 * 21 20 19 42 42 H 1.09002 * 109.46835 * 273.72255 * 25 24 23 43 43 H 1.09000 * 109.47592 * 33.72020 * 25 24 23 44 44 H 1.09004 * 109.47336 * 153.72357 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.4813 1.1875 6 1 5.0678 0.8672 1.3247 7 6 3.7548 2.3105 2.2141 8 7 2.9571 3.3207 1.9494 9 14 4.3040 1.9894 3.9704 10 1 5.5619 2.7315 4.2392 11 1 3.2491 2.4467 4.9103 12 1 4.5376 0.5350 4.1580 13 6 4.1793 1.4045 -1.1657 14 8 5.3922 1.4050 -1.1653 15 6 3.4262 1.3615 -2.4704 16 6 4.4210 1.3231 -3.6323 17 1 5.1051 2.1679 -3.5531 18 6 5.2157 0.0167 -3.5803 19 6 3.6721 1.4039 -4.9376 20 6 2.6200 0.5750 -5.3904 21 6 2.0079 -0.5895 -4.6554 22 7 2.2848 1.0170 -6.5680 23 8 2.9574 1.9673 -6.8949 24 6 3.8479 2.2904 -5.9465 25 6 4.8481 3.4165 -5.9940 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 2.6531 3.8992 2.6660 34 1 2.7994 2.2488 -2.5576 35 1 2.7999 0.4698 -2.4991 36 1 4.5263 -0.8268 -3.5427 37 1 5.8405 -0.0641 -4.4698 38 1 5.8465 0.0103 -2.6914 39 1 1.1397 -0.2477 -4.0919 40 1 1.6992 -1.3501 -5.3725 41 1 2.7421 -1.0130 -3.9701 42 1 5.7537 3.0771 -6.4968 43 1 4.4224 4.2578 -6.5410 44 1 5.0917 3.7292 -4.9786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132388895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:54 Heat of formation + Delta-G solvation = 3.868754 kcal Electronic energy + Delta-G solvation = -24877.452034 eV Core-core repulsion = 21411.726446 eV Total energy + Delta-G solvation = -3465.725588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.77942 -38.89671 -36.40933 -35.15320 -33.64766 -32.85821 -32.01121 -31.19057 -28.69919 -27.77219 -27.41141 -25.75541 -24.43482 -23.33289 -21.05264 -20.54502 -19.95933 -18.63735 -17.50816 -16.86011 -16.58205 -15.97060 -15.01626 -14.95719 -14.33447 -14.10479 -13.84363 -13.77197 -13.45700 -13.15766 -13.03682 -12.97921 -12.76736 -12.69568 -12.47434 -12.32308 -11.82428 -11.66092 -11.46433 -11.39622 -11.22761 -11.04431 -10.91078 -10.78943 -10.56133 -10.35689 -10.32571 -10.15380 -9.92379 -9.67082 -8.98122 -8.88322 -8.31189 -7.38897 -6.31718 -3.99572 1.58498 2.35011 3.17196 3.23063 3.25729 3.30443 3.93539 4.15133 4.29352 4.57021 4.79667 4.95746 5.00543 5.17277 5.28013 5.37805 5.47501 5.49567 5.52878 5.56279 5.57514 5.67323 5.73042 5.77984 5.84108 5.85974 6.02505 6.07890 6.12491 6.17655 6.24224 6.27943 6.34097 6.44157 6.46143 6.56867 6.66002 6.82443 6.90982 7.22485 7.58999 8.31363 8.40461 8.52951 9.21419 9.41783 10.04440 10.73142 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.004544 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.478506 B = 6160.655992 C = 6844.365695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.108 3.892 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.087 0.913 7 C 0.040 3.960 8 N -0.870 5.870 9 Si 0.914 3.086 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.465 3.535 14 O -0.578 6.578 15 C -0.129 4.129 16 C 0.006 3.994 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.182 4.182 20 C 0.027 3.973 21 C -0.081 4.081 22 N -0.374 5.374 23 O 0.090 5.910 24 C -0.040 4.040 25 C -0.073 4.073 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -3.400 -10.911 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.017 4.017 4 N -0.160 5.160 5 C -0.437 4.437 6 H 0.104 0.896 7 C -0.164 4.164 8 N -0.508 5.508 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.462 6.462 15 C -0.170 4.170 16 C -0.014 4.014 17 H 0.106 0.894 18 C -0.202 4.202 19 C -0.185 4.185 20 C -0.131 4.131 21 C -0.138 4.138 22 N -0.081 5.081 23 O 0.026 5.974 24 C -0.103 4.103 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.298 -3.604 -11.688 12.668 hybrid contribution 0.356 0.083 1.487 1.531 sum -2.942 -3.521 -10.202 11.186 Atomic orbital electron populations 1.21687 0.96428 1.00694 1.01539 1.21959 0.94766 0.99336 1.01712 1.21531 0.82510 0.94344 1.03307 1.43423 1.04275 1.63842 1.04507 1.19317 1.12169 1.23160 0.89085 0.89550 1.25393 0.97074 0.93537 1.00432 1.69940 1.34476 1.13335 1.33023 0.86147 0.78389 0.79019 0.82411 1.20308 1.20889 1.19411 1.20289 0.88072 0.81376 0.84949 1.90473 1.14058 1.54518 1.87109 1.21735 0.98569 1.02984 0.93675 1.19192 0.94982 1.00509 0.86688 0.89365 1.21925 1.00009 0.95283 1.02944 1.21201 1.00531 0.97358 0.99445 1.23383 0.97056 1.00293 0.92394 1.20314 1.01111 0.93110 0.99271 1.73784 1.16120 1.01926 1.16281 1.84752 1.36722 1.36531 1.39408 1.24217 0.96139 1.00425 0.89491 1.20338 0.94763 0.93053 1.04874 0.93231 0.93423 0.92756 0.93228 0.91623 0.88020 0.93430 0.92343 0.90411 0.90243 0.93454 0.93673 0.89288 0.90068 0.90865 0.89557 0.89681 0.90089 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.14 -2.40 6.23 -26.73 -0.17 -2.57 16 3 C 0.11 2.25 4.76 -4.04 -0.02 2.23 16 4 N -0.44 -10.74 2.49 -114.81 -0.29 -11.03 16 5 C -0.31 -8.34 8.82 -14.94 -0.13 -8.47 16 6 H 0.09 2.43 7.83 -52.48 -0.41 2.02 16 7 C 0.04 1.04 4.94 -17.47 -0.09 0.96 16 8 N -0.87 -23.22 11.67 55.50 0.65 -22.57 16 9 Si 0.91 20.29 29.60 -169.99 -5.03 15.26 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.46 10.73 7.37 -10.99 -0.08 10.65 16 14 O -0.58 -14.99 13.89 5.54 0.08 -14.91 16 15 C -0.13 -2.30 3.53 -27.88 -0.10 -2.40 16 16 C 0.01 0.09 2.33 -91.77 -0.21 -0.12 16 17 H 0.09 1.49 6.82 -51.93 -0.35 1.14 16 18 C -0.14 -2.27 8.80 37.16 0.33 -1.95 16 19 C -0.18 -2.67 4.94 -104.42 -0.52 -3.19 16 20 C 0.03 0.40 7.23 -82.10 -0.59 -0.19 16 21 C -0.08 -0.97 9.13 36.00 0.33 -0.65 16 22 N -0.37 -5.81 12.07 33.42 0.40 -5.41 16 23 O 0.09 1.31 11.20 17.16 0.19 1.51 16 24 C -0.04 -0.53 7.49 -35.31 -0.26 -0.79 16 25 C -0.07 -0.71 10.25 36.00 0.37 -0.34 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.80 6.99 -51.93 -0.36 0.44 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 2.38 5.77 -51.92 -0.30 2.08 16 32 H 0.05 0.92 6.52 -51.93 -0.34 0.58 16 33 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.08 1.38 7.40 -51.93 -0.38 1.00 16 35 H 0.08 1.28 4.95 -51.93 -0.26 1.02 16 36 H 0.05 0.68 6.07 -51.93 -0.32 0.37 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.65 6.10 -51.93 -0.32 1.33 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.01 5.31 -51.93 -0.28 0.74 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.95 7.19 -51.93 -0.37 0.58 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -30.57 350.49 -6.12 -36.69 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.63 Total: 3.70 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.78 Total: -8.51 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.77 Total: -39.01 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.27 Total: -13.41 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.57 -6.12 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132388895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.558 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds