Wall clock time and date at job start Tue Mar 31 2020 06:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47260 * 2 1 4 4 N 1.46496 * 109.47232 * 179.97438 * 3 2 1 5 5 C 1.37089 * 120.00164 * 268.13636 * 4 3 2 6 6 H 1.08008 * 119.99906 * 138.62999 * 5 4 3 7 7 C 1.38953 * 120.00267 * 318.63411 * 5 4 3 8 8 N 1.31409 * 120.00066 * 340.28383 * 7 5 4 9 9 Si 1.86797 * 119.99899 * 160.28611 * 7 5 4 10 10 H 1.48501 * 109.47393 * 90.00209 * 9 7 5 11 11 H 1.48503 * 109.46963 * 209.99806 * 9 7 5 12 12 H 1.48494 * 109.47470 * 330.00052 * 9 7 5 13 13 C 1.34778 * 119.99559 * 88.14283 * 4 3 2 14 14 O 1.21296 * 119.99591 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00057 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.46822 * 180.02562 * 15 13 4 17 17 H 1.08997 * 109.47535 * 304.99728 * 16 15 13 18 18 C 1.52998 * 109.47135 * 64.99949 * 16 15 13 19 19 C 1.50703 * 109.47004 * 184.99936 * 16 15 13 20 20 C 1.41380 * 128.00551 * 305.47198 * 19 16 15 21 21 C 1.50696 * 126.80438 * 359.97438 * 20 19 16 22 22 N 1.30177 * 106.39549 * 179.97438 * 20 19 16 23 23 O 1.20928 * 111.60492 * 0.02562 * 22 20 19 24 24 C 1.34047 * 111.56461 * 359.76326 * 23 22 20 25 25 C 1.50695 * 126.77660 * 180.29149 * 24 23 22 26 26 H 1.08995 * 109.47474 * 60.00398 * 1 2 3 27 27 H 1.09002 * 109.46757 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47156 * 299.99618 * 1 2 3 29 29 H 1.09004 * 109.47332 * 240.00078 * 2 1 3 30 30 H 1.08999 * 109.47728 * 120.00051 * 2 1 3 31 31 H 1.09010 * 109.46509 * 60.00026 * 3 2 1 32 32 H 1.08999 * 109.46791 * 300.00624 * 3 2 1 33 33 H 0.96994 * 119.99766 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.47349 * 60.00517 * 15 13 4 35 35 H 1.09000 * 109.47157 * 299.99822 * 15 13 4 36 36 H 1.09006 * 109.47183 * 53.47333 * 18 16 15 37 37 H 1.09001 * 109.46992 * 173.47066 * 18 16 15 38 38 H 1.09003 * 109.47157 * 293.47047 * 18 16 15 39 39 H 1.09004 * 109.47368 * 93.31363 * 21 20 19 40 40 H 1.09004 * 109.47375 * 213.31323 * 21 20 19 41 41 H 1.08999 * 109.47004 * 333.31162 * 21 20 19 42 42 H 1.09002 * 109.46835 * 273.72255 * 25 24 23 43 43 H 1.09000 * 109.47592 * 33.72020 * 25 24 23 44 44 H 1.09004 * 109.47336 * 153.72357 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.4813 1.1875 6 1 5.0678 0.8672 1.3247 7 6 3.7548 2.3105 2.2141 8 7 2.9571 3.3207 1.9494 9 14 4.3040 1.9894 3.9704 10 1 5.5619 2.7315 4.2392 11 1 3.2491 2.4467 4.9103 12 1 4.5376 0.5350 4.1580 13 6 4.1793 1.4045 -1.1657 14 8 5.3922 1.4050 -1.1653 15 6 3.4262 1.3615 -2.4704 16 6 4.4210 1.3231 -3.6323 17 1 5.1051 2.1679 -3.5531 18 6 5.2157 0.0167 -3.5803 19 6 3.6721 1.4039 -4.9376 20 6 2.6200 0.5750 -5.3904 21 6 2.0079 -0.5895 -4.6554 22 7 2.2848 1.0170 -6.5680 23 8 2.9574 1.9673 -6.8949 24 6 3.8479 2.2904 -5.9465 25 6 4.8481 3.4165 -5.9940 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 2.6531 3.8992 2.6660 34 1 2.7994 2.2488 -2.5576 35 1 2.7999 0.4698 -2.4991 36 1 4.5263 -0.8268 -3.5427 37 1 5.8405 -0.0641 -4.4698 38 1 5.8465 0.0103 -2.6914 39 1 1.1397 -0.2477 -4.0919 40 1 1.6992 -1.3501 -5.3725 41 1 2.7421 -1.0130 -3.9701 42 1 5.7537 3.0771 -6.4968 43 1 4.4224 4.2578 -6.5410 44 1 5.0917 3.7292 -4.9786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132388895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:53 Heat of formation + Delta-G solvation = -12.516326 kcal Electronic energy + Delta-G solvation = -24878.162544 eV Core-core repulsion = 21411.726446 eV Total energy + Delta-G solvation = -3466.436099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.87793 -40.63522 -37.79316 -36.81941 -34.72794 -34.51548 -33.23586 -32.94593 -29.71071 -29.22924 -28.43278 -27.35660 -26.10439 -24.65017 -22.47795 -21.86119 -21.03087 -20.32538 -18.73059 -18.60461 -17.94261 -17.43583 -16.84314 -16.44656 -15.95430 -15.37636 -15.33684 -15.16729 -14.44401 -14.38072 -14.29285 -14.12910 -13.92858 -13.75507 -13.61920 -13.49793 -13.35503 -13.14641 -13.11120 -12.93460 -12.66255 -12.37122 -12.32419 -12.16803 -12.10548 -12.01286 -11.93689 -11.51445 -11.38376 -10.85773 -10.74914 -10.20200 -10.01247 -9.30767 -8.29994 -6.05235 0.51909 1.24455 1.38656 1.42399 1.54215 2.12862 2.20392 2.32811 3.04317 3.06620 3.30941 3.58079 3.74786 3.91909 4.14765 4.18027 4.22068 4.33120 4.38044 4.42967 4.49759 4.60924 4.65003 4.68936 4.70256 4.75923 4.79307 4.82867 4.92796 4.93002 5.00862 5.09491 5.15201 5.18201 5.22189 5.31485 5.37739 5.43495 5.49519 5.54893 5.61875 6.29050 6.61346 7.25222 7.32624 7.54266 8.15803 8.73297 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.004544 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.478506 B = 6160.655992 C = 6844.365695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.109 3.891 4 N -0.457 5.457 5 C -0.337 4.337 6 H 0.062 0.938 7 C 0.005 3.995 8 N -0.892 5.892 9 Si 0.975 3.025 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.266 1.266 13 C 0.454 3.546 14 O -0.615 6.615 15 C -0.114 4.114 16 C 0.016 3.984 17 H 0.075 0.925 18 C -0.139 4.139 19 C -0.203 4.203 20 C 0.027 3.973 21 C -0.084 4.084 22 N -0.395 5.395 23 O 0.084 5.916 24 C -0.027 4.027 25 C -0.075 4.075 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.271 0.729 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -3.846 -11.750 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C -0.014 4.014 4 N -0.176 5.176 5 C -0.466 4.466 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.530 5.530 9 Si 0.798 3.202 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.190 1.190 13 C 0.244 3.756 14 O -0.501 6.501 15 C -0.154 4.154 16 C -0.004 4.004 17 H 0.093 0.907 18 C -0.196 4.196 19 C -0.207 4.207 20 C -0.132 4.132 21 C -0.141 4.141 22 N -0.104 5.104 23 O 0.023 5.977 24 C -0.090 4.090 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.468 -4.042 -12.542 13.914 hybrid contribution 0.759 0.265 1.702 1.882 sum -3.709 -3.777 -10.841 12.064 Atomic orbital electron populations 1.21640 0.93550 1.02423 1.02012 1.21859 0.97144 0.96531 1.01401 1.21595 0.80569 0.96678 1.02588 1.43701 1.05662 1.63940 1.04260 1.19282 1.12470 1.23755 0.91046 0.92039 1.26083 0.97008 0.92971 1.03639 1.70007 1.35065 1.13722 1.34180 0.85235 0.78008 0.78910 0.78007 1.20565 1.19522 1.19023 1.21139 0.88011 0.80085 0.86346 1.90447 1.15889 1.55848 1.87917 1.21633 0.98535 1.04005 0.91204 1.18982 0.94409 1.00164 0.86808 0.90658 1.21833 1.00008 0.95738 1.02030 1.21020 1.01557 0.98800 0.99304 1.23761 0.96688 1.00574 0.92167 1.20437 1.01412 0.92663 0.99563 1.73780 1.17045 1.02711 1.16876 1.84739 1.36878 1.36480 1.39643 1.24788 0.95442 1.00199 0.88566 1.20533 0.94756 0.92686 1.05235 0.91695 0.91056 0.93389 0.91900 0.93581 0.90655 0.92057 0.91961 0.90121 0.88108 0.92115 0.92172 0.92499 0.88974 0.89522 0.89343 0.87690 0.87931 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.91 71.98 0.71 -2.83 16 2 C -0.13 -4.37 6.23 30.59 0.19 -4.18 16 3 C 0.11 4.55 4.76 86.38 0.41 4.96 16 4 N -0.46 -22.66 2.49 -635.52 -1.58 -24.24 16 5 C -0.34 -18.74 8.82 84.04 0.74 -18.00 16 6 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 7 C 0.01 0.29 4.94 84.93 0.42 0.71 16 8 N -0.89 -48.11 11.67 21.66 0.25 -47.86 16 9 Si 0.97 42.05 29.60 68.60 2.03 44.08 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.45 21.34 7.37 87.66 0.65 21.99 16 14 O -0.61 -33.02 13.89 -3.08 -0.04 -33.06 16 15 C -0.11 -3.97 3.53 29.85 0.11 -3.86 16 16 C 0.02 0.50 2.33 -11.54 -0.03 0.47 16 17 H 0.08 2.55 6.82 -2.39 -0.02 2.53 16 18 C -0.14 -4.29 8.80 71.98 0.63 -3.66 16 19 C -0.20 -5.64 4.94 -19.73 -0.10 -5.73 16 20 C 0.03 0.73 7.23 43.58 0.31 1.04 16 21 C -0.08 -1.80 9.13 71.23 0.65 -1.15 16 22 N -0.40 -11.56 12.07 -49.54 -0.60 -12.16 16 23 O 0.08 2.31 11.20 71.56 0.80 3.11 16 24 C -0.03 -0.66 7.49 25.04 0.19 -0.48 16 25 C -0.08 -1.30 10.25 71.23 0.73 -0.57 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.91 6.99 -2.39 -0.02 1.90 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 3.56 5.77 -2.38 -0.01 3.55 16 32 H 0.06 2.33 6.52 -2.39 -0.02 2.31 16 33 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.08 2.78 7.40 -2.39 -0.02 2.76 16 35 H 0.10 3.05 4.95 -2.39 -0.01 3.04 16 36 H 0.06 1.67 6.07 -2.38 -0.01 1.66 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.14 6.10 -2.39 -0.01 2.13 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 41 H 0.09 1.85 5.31 -2.39 -0.01 1.83 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.69 7.19 -2.39 -0.02 1.68 16 Total: -1.00 -67.59 350.49 7.48 -60.11 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.00 Total: 21.32 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 5.62 Total: -11.28 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.93 Total: -84.26 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: 0.76 Total: -29.96 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.59 7.48 -60.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132388895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.589 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds