Wall clock time and date at job start Tue Mar 31 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46852 * 2 1 4 4 N 1.46498 * 109.46821 * 179.97438 * 3 2 1 5 5 C 1.36684 * 120.00112 * 269.99886 * 4 3 2 6 6 H 1.07999 * 119.99852 * 138.99905 * 5 4 3 7 7 C 1.39160 * 119.99957 * 319.00036 * 5 4 3 8 8 N 1.31288 * 119.99761 * 347.10981 * 7 5 4 9 9 Si 1.86795 * 119.99854 * 167.10645 * 7 5 4 10 10 H 1.48507 * 109.47414 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46991 * 120.00119 * 9 7 5 12 12 H 1.48505 * 109.47448 * 239.99972 * 9 7 5 13 13 C 1.34779 * 119.99959 * 90.00157 * 4 3 2 14 14 O 1.21652 * 119.99648 * 5.22913 * 13 4 3 15 15 C 1.47296 * 120.00116 * 185.23533 * 13 4 3 16 16 C 1.36991 * 126.95683 * 184.70988 * 15 13 4 17 17 C 1.41170 * 103.83678 * 180.11033 * 16 15 13 18 18 C 1.50699 * 126.69124 * 179.91517 * 17 16 15 19 19 C 1.53002 * 109.47153 * 84.71577 * 18 17 16 20 20 C 1.53002 * 109.47373 * 175.50972 * 19 18 17 21 21 C 1.52993 * 109.47347 * 324.71174 * 18 17 16 22 22 C 1.53003 * 109.47311 * 296.19780 * 21 18 17 23 23 N 1.30171 * 106.61624 * 359.65481 * 17 16 15 24 24 O 1.20885 * 112.01241 * 0.22622 * 23 17 16 25 25 H 1.09005 * 109.47444 * 299.99982 * 1 2 3 26 26 H 1.09003 * 109.47462 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 239.99768 * 2 1 3 29 29 H 1.08996 * 109.46669 * 119.99871 * 2 1 3 30 30 H 1.08995 * 109.47062 * 59.99874 * 3 2 1 31 31 H 1.08996 * 109.46911 * 299.99691 * 3 2 1 32 32 H 0.97000 * 119.99724 * 185.02147 * 8 7 5 33 33 H 1.07993 * 128.08263 * 0.03279 * 16 15 13 34 34 H 1.09006 * 109.47266 * 204.71121 * 18 17 16 35 35 H 1.09004 * 109.46694 * 295.50510 * 19 18 17 36 36 H 1.08994 * 109.47195 * 55.50573 * 19 18 17 37 37 H 1.08997 * 109.47138 * 66.87761 * 20 19 18 38 38 H 1.08992 * 109.47064 * 186.88010 * 20 19 18 39 39 H 1.09004 * 109.46546 * 306.87865 * 20 19 18 40 40 H 1.09001 * 109.47001 * 56.19829 * 21 18 17 41 41 H 1.09002 * 109.47262 * 176.19442 * 21 18 17 42 42 H 1.09003 * 109.46941 * 56.12935 * 22 21 18 43 43 H 1.08993 * 109.47269 * 176.13034 * 22 21 18 44 44 H 1.09002 * 109.46965 * 296.13072 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1879 1.4427 1.1846 6 1 5.0691 0.8291 1.2998 7 6 3.7477 2.2336 2.2417 8 7 2.8423 3.1615 2.0345 9 14 4.4449 1.9748 3.9552 10 1 5.4433 0.8759 3.9227 11 1 5.1002 3.2248 4.4169 12 1 3.3459 1.6183 4.8882 13 6 4.1793 1.4424 -1.1663 14 8 3.5752 1.5383 -2.2179 15 6 5.6477 1.3260 -1.1684 16 6 6.4782 1.4001 -2.2553 17 6 7.7674 1.2244 -1.7077 18 6 9.0723 1.2149 -2.4615 19 6 9.5642 2.6517 -2.6477 20 6 10.9418 2.6369 -3.3132 21 6 8.8654 0.5651 -3.8310 22 6 8.4651 -0.8999 -3.6453 23 7 7.6097 1.0778 -0.4239 24 8 6.4459 1.1303 -0.1015 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.5885 3.7606 2.7539 33 1 6.2094 1.5552 -3.2897 34 1 9.8132 0.6474 -1.8983 35 1 8.8620 3.1972 -3.2781 36 1 9.6353 3.1401 -1.6759 37 1 10.8492 2.2605 -4.3319 38 1 11.3455 3.6491 -3.3352 39 1 11.6121 1.9906 -2.7465 40 1 8.0766 1.0921 -4.3678 41 1 9.7921 0.6189 -4.4024 42 1 7.5767 -0.9568 -3.0162 43 1 8.2510 -1.3441 -4.6173 44 1 9.2823 -1.4424 -3.1699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151958572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:46 Heat of formation + Delta-G solvation = 1.313077 kcal Electronic energy + Delta-G solvation = -24528.883189 eV Core-core repulsion = 21063.046778 eV Total energy + Delta-G solvation = -3465.836411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.15821 -38.60947 -37.39346 -35.33865 -32.96708 -32.65140 -31.72925 -31.55606 -30.74856 -26.89980 -26.10957 -25.00431 -23.05269 -22.54231 -22.30268 -20.80015 -20.21962 -19.10440 -18.04270 -16.85856 -15.96983 -15.71373 -14.91889 -14.81817 -14.62035 -14.33691 -14.17504 -13.95222 -13.70933 -13.51395 -13.14086 -12.75434 -12.48834 -12.44644 -12.08937 -11.71564 -11.62282 -11.54558 -11.35119 -11.32216 -11.05983 -11.03986 -10.96619 -10.74548 -10.59187 -10.39398 -10.34669 -10.33517 -9.83853 -9.44149 -9.31398 -8.87919 -8.84967 -7.63362 -6.50215 -4.24002 1.73131 2.68762 3.09157 3.18285 3.24440 3.70872 3.97627 4.16818 4.37998 4.54927 4.77680 4.90130 4.95518 5.17491 5.21626 5.35430 5.40649 5.43689 5.71011 5.72532 5.74493 5.77070 5.82647 5.85895 5.90323 5.94548 6.01633 6.06881 6.10300 6.21518 6.27464 6.31848 6.41253 6.44430 6.49525 6.58570 6.60128 6.74775 7.02418 7.27187 7.47436 7.76520 8.26682 8.76772 8.95386 9.27199 9.67070 10.49863 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.004853 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.499318 B = 5768.615946 C = 6855.182549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.108 3.892 4 N -0.407 5.407 5 C -0.342 4.342 6 H 0.106 0.894 7 C 0.051 3.949 8 N -0.856 5.856 9 Si 0.920 3.080 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.528 3.472 14 O -0.586 6.586 15 C -0.017 4.017 16 C -0.199 4.199 17 C 0.012 3.988 18 C -0.004 4.004 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.154 4.154 23 N -0.378 5.378 24 O 0.134 5.866 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.274 0.726 33 H 0.168 0.832 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -3.467 -6.087 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.015 4.015 4 N -0.122 5.122 5 C -0.470 4.470 6 H 0.123 0.877 7 C -0.156 4.156 8 N -0.492 5.492 9 Si 0.746 3.254 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.316 3.684 14 O -0.472 6.472 15 C -0.083 4.083 16 C -0.222 4.222 17 C -0.145 4.145 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.207 4.207 21 C -0.154 4.154 22 C -0.211 4.211 23 N -0.080 5.080 24 O 0.065 5.935 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.185 0.815 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.094 -3.508 -5.412 10.350 hybrid contribution -0.039 0.165 0.232 0.287 sum 8.056 -3.342 -5.181 10.144 Atomic orbital electron populations 1.21649 0.96267 1.00596 1.01543 1.21830 0.94971 0.98954 1.01497 1.21686 0.80141 0.95130 1.04517 1.43418 1.05480 1.59046 1.04291 1.19854 1.11757 1.26641 0.88756 0.87709 1.25515 0.95749 0.93784 1.00598 1.69702 1.29760 1.15760 1.33977 0.85946 0.79123 0.79039 0.81289 1.18575 1.20369 1.20275 1.17012 0.82349 0.83777 0.85300 1.90694 1.66788 1.57873 1.31852 1.24511 0.94804 1.02933 0.86070 1.22481 0.90559 1.08547 1.00649 1.23244 0.96662 1.04192 0.90414 1.19571 0.90810 0.97139 0.94843 1.21550 0.96984 0.95462 1.01507 1.21807 0.96599 1.01632 1.00697 1.21600 1.01907 0.96200 0.95654 1.21798 1.01797 0.95926 1.01594 1.73664 0.99334 1.19025 1.16019 1.85306 1.10509 1.65007 1.32644 0.92814 0.93064 0.93494 0.93039 0.91962 0.86680 0.92184 0.91508 0.81495 0.89846 0.91407 0.91686 0.92433 0.92699 0.92701 0.91337 0.91108 0.92323 0.92734 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.65 6.26 -26.73 -0.17 -2.81 16 3 C 0.11 2.50 5.03 -4.04 -0.02 2.48 16 4 N -0.41 -10.22 2.50 -116.10 -0.29 -10.51 16 5 C -0.34 -8.63 8.24 -15.05 -0.12 -8.75 16 6 H 0.11 2.64 5.63 -52.49 -0.30 2.34 16 7 C 0.05 1.27 5.13 -17.44 -0.09 1.18 16 8 N -0.86 -21.91 11.18 55.51 0.62 -21.29 16 9 Si 0.92 19.43 29.58 -169.99 -5.03 14.40 16 10 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.53 13.22 7.62 -12.58 -0.10 13.13 16 14 O -0.59 -15.41 16.47 5.23 0.09 -15.33 16 15 C -0.02 -0.38 6.94 -36.35 -0.25 -0.63 16 16 C -0.20 -3.81 9.59 -38.92 -0.37 -4.19 16 17 C 0.01 0.22 5.22 -82.18 -0.43 -0.21 16 18 C 0.00 -0.06 2.34 -91.77 -0.22 -0.27 16 19 C -0.12 -1.40 5.39 -26.73 -0.14 -1.55 16 20 C -0.15 -1.39 9.48 37.16 0.35 -1.04 16 21 C -0.12 -1.31 4.96 -26.73 -0.13 -1.44 16 22 C -0.15 -1.82 9.76 37.16 0.36 -1.46 16 23 N -0.38 -7.75 12.04 33.53 0.40 -7.34 16 24 O 0.13 3.02 8.15 15.45 0.13 3.15 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.12 2.81 5.43 -51.93 -0.28 2.53 16 31 H 0.06 1.43 7.36 -51.93 -0.38 1.05 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.17 2.91 7.56 -52.49 -0.40 2.52 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.47 6.81 -51.93 -0.35 0.12 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.79 7.28 -51.93 -0.38 0.41 16 41 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 42 H 0.06 0.84 6.81 -51.93 -0.35 0.48 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -27.95 356.55 -6.66 -34.61 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.99 Total: 4.44 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.96 Total: -7.50 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.73 Total: -39.14 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.21 Total: -12.18 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.95 -6.66 -34.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151958572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.920 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds