Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46852 * 2 1 4 4 N 1.46498 * 109.46821 * 179.97438 * 3 2 1 5 5 C 1.36684 * 120.00112 * 269.99886 * 4 3 2 6 6 H 1.07999 * 119.99852 * 138.99905 * 5 4 3 7 7 C 1.39160 * 119.99957 * 319.00036 * 5 4 3 8 8 N 1.31288 * 119.99761 * 347.10981 * 7 5 4 9 9 Si 1.86795 * 119.99854 * 167.10645 * 7 5 4 10 10 H 1.48507 * 109.47414 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46991 * 120.00119 * 9 7 5 12 12 H 1.48505 * 109.47448 * 239.99972 * 9 7 5 13 13 C 1.34779 * 119.99959 * 90.00157 * 4 3 2 14 14 O 1.21652 * 119.99648 * 5.22913 * 13 4 3 15 15 C 1.47296 * 120.00116 * 185.23533 * 13 4 3 16 16 C 1.36991 * 126.95683 * 184.70988 * 15 13 4 17 17 C 1.41170 * 103.83678 * 180.11033 * 16 15 13 18 18 C 1.50699 * 126.69124 * 179.91517 * 17 16 15 19 19 C 1.53002 * 109.47153 * 84.71577 * 18 17 16 20 20 C 1.53002 * 109.47373 * 175.50972 * 19 18 17 21 21 C 1.52993 * 109.47347 * 324.71174 * 18 17 16 22 22 C 1.53003 * 109.47311 * 296.19780 * 21 18 17 23 23 N 1.30171 * 106.61624 * 359.65481 * 17 16 15 24 24 O 1.20885 * 112.01241 * 0.22622 * 23 17 16 25 25 H 1.09005 * 109.47444 * 299.99982 * 1 2 3 26 26 H 1.09003 * 109.47462 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 239.99768 * 2 1 3 29 29 H 1.08996 * 109.46669 * 119.99871 * 2 1 3 30 30 H 1.08995 * 109.47062 * 59.99874 * 3 2 1 31 31 H 1.08996 * 109.46911 * 299.99691 * 3 2 1 32 32 H 0.97000 * 119.99724 * 185.02147 * 8 7 5 33 33 H 1.07993 * 128.08263 * 0.03279 * 16 15 13 34 34 H 1.09006 * 109.47266 * 204.71121 * 18 17 16 35 35 H 1.09004 * 109.46694 * 295.50510 * 19 18 17 36 36 H 1.08994 * 109.47195 * 55.50573 * 19 18 17 37 37 H 1.08997 * 109.47138 * 66.87761 * 20 19 18 38 38 H 1.08992 * 109.47064 * 186.88010 * 20 19 18 39 39 H 1.09004 * 109.46546 * 306.87865 * 20 19 18 40 40 H 1.09001 * 109.47001 * 56.19829 * 21 18 17 41 41 H 1.09002 * 109.47262 * 176.19442 * 21 18 17 42 42 H 1.09003 * 109.46941 * 56.12935 * 22 21 18 43 43 H 1.08993 * 109.47269 * 176.13034 * 22 21 18 44 44 H 1.09002 * 109.46965 * 296.13072 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1879 1.4427 1.1846 6 1 5.0691 0.8291 1.2998 7 6 3.7477 2.2336 2.2417 8 7 2.8423 3.1615 2.0345 9 14 4.4449 1.9748 3.9552 10 1 5.4433 0.8759 3.9227 11 1 5.1002 3.2248 4.4169 12 1 3.3459 1.6183 4.8882 13 6 4.1793 1.4424 -1.1663 14 8 3.5752 1.5383 -2.2179 15 6 5.6477 1.3260 -1.1684 16 6 6.4782 1.4001 -2.2553 17 6 7.7674 1.2244 -1.7077 18 6 9.0723 1.2149 -2.4615 19 6 9.5642 2.6517 -2.6477 20 6 10.9418 2.6369 -3.3132 21 6 8.8654 0.5651 -3.8310 22 6 8.4651 -0.8999 -3.6453 23 7 7.6097 1.0778 -0.4239 24 8 6.4459 1.1303 -0.1015 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.5885 3.7606 2.7539 33 1 6.2094 1.5552 -3.2897 34 1 9.8132 0.6474 -1.8983 35 1 8.8620 3.1972 -3.2781 36 1 9.6353 3.1401 -1.6759 37 1 10.8492 2.2605 -4.3319 38 1 11.3455 3.6491 -3.3352 39 1 11.6121 1.9906 -2.7465 40 1 8.0766 1.0921 -4.3678 41 1 9.7921 0.6189 -4.4024 42 1 7.5767 -0.9568 -3.0162 43 1 8.2510 -1.3441 -4.6173 44 1 9.2823 -1.4424 -3.1699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151958572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = -12.554496 kcal Electronic energy + Delta-G solvation = -24529.484532 eV Core-core repulsion = 21063.046778 eV Total energy + Delta-G solvation = -3466.437754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.75679 -40.52969 -38.50267 -37.23561 -34.64881 -34.06796 -33.48971 -32.62194 -32.36956 -27.98729 -27.76688 -26.89685 -24.43983 -23.94934 -23.48082 -22.36074 -21.67013 -20.79256 -19.67405 -18.48880 -17.79740 -17.31803 -16.76870 -16.48351 -15.82948 -15.63902 -15.53819 -15.36967 -15.09975 -14.96299 -14.55050 -14.22311 -14.13618 -13.47462 -13.35773 -13.28341 -13.05513 -12.89229 -12.73072 -12.64775 -12.45219 -12.34080 -12.29590 -12.04630 -12.02526 -12.00241 -11.57914 -11.55448 -11.39570 -11.21853 -10.86929 -10.80891 -10.55165 -9.56517 -8.40722 -6.21893 -0.01247 1.18626 1.40657 1.44205 1.57429 1.98169 2.16384 2.32152 2.80579 2.99701 3.10431 3.60052 3.91642 4.03412 4.10250 4.15972 4.22493 4.30413 4.32968 4.38568 4.46409 4.53998 4.55648 4.65773 4.74794 4.79848 4.90632 4.94781 5.00510 5.03436 5.08441 5.08803 5.22625 5.23168 5.24964 5.32829 5.34153 5.42161 5.44652 5.48136 5.57732 5.86464 6.32912 6.90663 7.15996 7.39825 7.73573 8.60352 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.004853 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.499318 B = 5768.615946 C = 6855.182549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.108 3.892 4 N -0.417 5.417 5 C -0.358 4.358 6 H 0.102 0.898 7 C 0.016 3.984 8 N -0.883 5.883 9 Si 0.982 3.018 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.266 1.266 13 C 0.518 3.482 14 O -0.610 6.610 15 C -0.049 4.049 16 C -0.181 4.181 17 C 0.035 3.965 18 C -0.005 4.005 19 C -0.115 4.115 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.154 4.154 23 N -0.393 5.393 24 O 0.106 5.894 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.279 0.721 33 H 0.185 0.815 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -4.025 -6.722 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.015 4.015 4 N -0.132 5.132 5 C -0.486 4.486 6 H 0.119 0.881 7 C -0.189 4.189 8 N -0.519 5.519 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.191 1.191 13 C 0.306 3.694 14 O -0.498 6.498 15 C -0.114 4.114 16 C -0.204 4.204 17 C -0.124 4.124 18 C -0.025 4.025 19 C -0.154 4.154 20 C -0.201 4.201 21 C -0.149 4.149 22 C -0.212 4.212 23 N -0.100 5.100 24 O 0.042 5.958 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.203 0.797 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.670 -4.068 -6.028 12.100 hybrid contribution -0.461 0.354 0.334 0.671 sum 9.209 -3.713 -5.694 11.447 Atomic orbital electron populations 1.21606 0.93174 1.02515 1.01982 1.21740 0.97605 0.96260 1.00748 1.21714 0.79591 0.97150 1.03012 1.43659 1.06223 1.58860 1.04452 1.19991 1.12137 1.27280 0.89143 0.88089 1.26267 0.95878 0.93182 1.03602 1.69786 1.30606 1.16372 1.35177 0.85036 0.78667 0.78752 0.77071 1.18553 1.20250 1.19051 1.17345 0.83516 0.83511 0.85050 1.90645 1.67749 1.59071 1.32373 1.24329 0.94175 1.05492 0.87439 1.22807 0.90658 1.06263 1.00682 1.23945 0.97933 1.01004 0.89500 1.19863 0.88422 0.98582 0.95588 1.21544 0.98860 0.94027 1.00931 1.21775 0.94555 1.02518 1.01290 1.21634 1.03550 0.95342 0.94387 1.21809 1.00675 0.96751 1.01950 1.73654 0.98538 1.20199 1.17567 1.85270 1.11106 1.66433 1.32985 0.92388 0.92632 0.90807 0.93969 0.92387 0.87856 0.93705 0.91049 0.79749 0.89166 0.91547 0.93497 0.90769 0.91913 0.92093 0.91373 0.87883 0.95497 0.91109 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.13 -5.02 6.26 30.60 0.19 -4.83 16 3 C 0.11 5.18 5.03 86.38 0.43 5.62 16 4 N -0.42 -21.77 2.50 -639.45 -1.60 -23.36 16 5 C -0.36 -18.61 8.24 84.16 0.69 -17.92 16 6 H 0.10 5.27 5.63 -2.91 -0.02 5.26 16 7 C 0.02 0.79 5.13 85.00 0.44 1.23 16 8 N -0.88 -46.02 11.18 21.70 0.24 -45.78 16 9 Si 0.98 40.03 29.58 68.60 2.03 42.06 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 13 C 0.52 26.94 7.62 86.63 0.66 27.60 16 14 O -0.61 -33.23 16.47 -4.19 -0.07 -33.30 16 15 C -0.05 -2.26 6.94 24.36 0.17 -2.09 16 16 C -0.18 -6.95 9.59 22.70 0.22 -6.73 16 17 C 0.03 1.20 5.22 43.52 0.23 1.43 16 18 C -0.01 -0.13 2.34 -11.54 -0.03 -0.16 16 19 C -0.12 -2.52 5.39 30.60 0.16 -2.35 16 20 C -0.14 -2.18 9.48 71.98 0.68 -1.50 16 21 C -0.11 -2.17 4.96 30.59 0.15 -2.02 16 22 C -0.15 -3.31 9.76 71.98 0.70 -2.61 16 23 N -0.39 -16.24 12.04 -48.78 -0.59 -16.83 16 24 O 0.11 4.93 8.15 65.48 0.53 5.47 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.10 5.21 5.43 -2.39 -0.01 5.20 16 31 H 0.04 2.23 7.36 -2.39 -0.02 2.22 16 32 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.19 6.30 7.56 -2.91 -0.02 6.28 16 34 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 0.89 6.81 -2.39 -0.02 0.88 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.07 1.36 7.28 -2.39 -0.02 1.34 16 41 H 0.10 1.42 6.53 -2.39 -0.02 1.40 16 42 H 0.03 0.73 6.81 -2.39 -0.02 0.72 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -62.20 356.55 6.95 -55.25 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.98 Total: 24.35 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.42 Total: -7.85 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.94 Total: -85.97 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: 0.46 Total: -27.83 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -62.20 6.95 -55.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151958572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.691 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds