Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 C 1.52992 * 109.47488 * 175.24221 * 3 2 1 5 5 C 1.53000 * 109.47362 * 294.41611 * 4 3 2 6 6 C 1.50700 * 109.47114 * 295.24248 * 3 2 1 7 7 C 1.41263 * 126.70810 * 274.99850 * 6 3 2 8 8 C 1.36819 * 103.84921 * 179.97438 * 7 6 3 9 9 C 1.47510 * 126.94406 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00313 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00058 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00149 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47182 * 34.99696 * 12 11 9 14 14 C 1.50702 * 109.47445 * 154.99951 * 12 11 9 15 15 H 1.08006 * 119.99606 * 359.97438 * 14 12 11 16 16 C 1.37872 * 119.99970 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00157 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99815 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47559 * 120.00188 * 18 16 14 21 21 H 1.48506 * 109.47181 * 239.99815 * 18 16 14 22 22 C 1.53005 * 109.46923 * 274.99962 * 12 11 9 23 23 C 1.52997 * 109.47376 * 64.99763 * 22 12 11 24 24 O 1.34644 * 106.11583 * 0.02562 * 8 7 6 25 25 N 1.20890 * 111.46152 * 359.74570 * 24 8 7 26 26 H 1.08999 * 109.47091 * 186.91556 * 1 2 3 27 27 H 1.09001 * 109.47112 * 306.91097 * 1 2 3 28 28 H 1.08999 * 109.47731 * 66.90894 * 1 2 3 29 29 H 1.09002 * 109.46994 * 240.00375 * 2 1 3 30 30 H 1.09002 * 109.47546 * 120.00158 * 2 1 3 31 31 H 1.08998 * 109.47340 * 55.23632 * 3 2 1 32 32 H 1.09002 * 109.46987 * 54.41234 * 4 3 2 33 33 H 1.09007 * 109.47693 * 174.41372 * 4 3 2 34 34 H 1.09011 * 109.46485 * 306.03627 * 5 4 3 35 35 H 1.08999 * 109.47194 * 66.03635 * 5 4 3 36 36 H 1.09000 * 109.47473 * 186.04355 * 5 4 3 37 37 H 1.07998 * 128.07245 * 0.02562 * 7 6 3 38 38 H 0.97000 * 120.00552 * 0.02562 * 11 9 8 39 39 H 0.97009 * 119.99962 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47010 * 184.99880 * 22 12 11 41 41 H 1.09002 * 109.46809 * 304.99603 * 22 12 11 42 42 H 1.08995 * 109.47496 * 179.97438 * 23 22 12 43 43 H 1.09003 * 109.47147 * 300.00034 * 23 22 12 44 44 H 1.08999 * 109.46794 * 60.00064 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 0.1196 5 6 3.9704 0.8851 1.4850 6 6 1.6362 2.1181 -1.2851 7 6 2.3278 2.0734 -2.5161 8 6 1.5589 2.8367 -3.3516 9 6 1.8182 3.1304 -4.7738 10 8 2.8044 2.6736 -5.3189 11 7 0.9619 3.9049 -5.4689 12 6 1.2191 4.1961 -6.8815 13 1 1.6785 3.3277 -7.3537 14 6 -0.0810 4.5153 -7.5735 15 1 -1.0064 4.5020 -7.0168 16 6 -0.0892 4.8230 -8.9174 17 7 1.0376 4.8386 -9.5953 18 14 -1.7007 5.2193 -9.7750 19 1 -2.8155 5.1342 -8.7977 20 1 -1.6379 6.5924 -10.3368 21 1 -1.9299 4.2455 -10.8726 22 6 2.1631 5.3953 -6.9913 23 6 3.5252 5.0281 -6.3992 24 8 0.5177 3.2657 -2.6136 25 7 0.5798 2.8528 -1.4790 26 1 -0.3633 -1.0202 0.1237 27 1 -0.3633 0.6172 0.8217 28 1 -0.3634 0.4030 -0.9453 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6087 1.9804 0.8442 32 1 3.9921 0.8237 -0.6683 33 1 3.9364 2.4643 0.0201 34 1 3.4577 1.4395 2.2712 35 1 3.6938 -0.1676 1.5431 36 1 5.0481 0.9853 1.6134 37 1 3.2481 1.5566 -2.7445 38 1 0.1753 4.2697 -5.0340 39 1 1.0318 5.0548 -10.5410 40 1 2.2842 5.6675 -8.0399 41 1 1.7440 6.2390 -6.4430 42 1 4.1978 5.8822 -6.4778 43 1 3.4041 4.7559 -5.3507 44 1 3.9442 4.1844 -6.9476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183793594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -5.609719 kcal Electronic energy + Delta-G solvation = -23966.947456 eV Core-core repulsion = 20500.810850 eV Total energy + Delta-G solvation = -3466.136606 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.84665 -39.09277 -37.72848 -35.26775 -33.21110 -32.60111 -32.10624 -31.68802 -30.68365 -27.25269 -27.15542 -24.09082 -23.29157 -23.06008 -22.57094 -20.85659 -19.94614 -19.37180 -18.20697 -17.59260 -16.47146 -15.78854 -15.52640 -15.08929 -14.92631 -14.56466 -14.52899 -14.26196 -13.77119 -13.54899 -13.28890 -12.74180 -12.68450 -12.33157 -12.19947 -11.99526 -11.62555 -11.59800 -11.58580 -11.31115 -11.17020 -11.01881 -10.91346 -10.89410 -10.81882 -10.37997 -10.26892 -9.99309 -9.75408 -9.50865 -9.46879 -9.11884 -8.56876 -8.01196 -6.17357 -4.26903 1.08824 2.14536 2.96458 3.22391 3.30735 3.33741 3.57035 3.83103 3.94925 4.31390 4.44606 4.66039 4.84530 4.88207 4.98748 5.09632 5.14671 5.18773 5.23548 5.37771 5.43674 5.49486 5.58957 5.67449 5.68413 5.81467 5.86068 5.96562 5.98100 6.09222 6.12760 6.33008 6.38646 6.57540 6.96842 7.09371 7.18372 7.29525 7.52136 7.64141 7.80307 8.09249 8.16768 8.48767 8.64280 8.88122 9.40083 10.88113 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003354 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.793574 B = 8347.086213 C = 9042.631971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.008 4.008 4 C -0.119 4.119 5 C -0.152 4.152 6 C 0.019 3.981 7 C -0.167 4.167 8 C -0.063 4.063 9 C 0.585 3.415 10 O -0.520 6.520 11 N -0.686 5.686 12 C 0.268 3.732 13 H 0.054 0.946 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C -0.129 4.129 23 C -0.140 4.140 24 O 0.111 5.889 25 N -0.352 5.352 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.178 0.822 38 H 0.396 0.604 39 H 0.265 0.735 40 H 0.103 0.897 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -6.497 18.390 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.027 4.027 4 C -0.157 4.157 5 C -0.209 4.209 6 C -0.139 4.139 7 C -0.190 4.190 8 C -0.129 4.129 9 C 0.366 3.634 10 O -0.398 6.398 11 N -0.333 5.333 12 C 0.168 3.832 13 H 0.072 0.928 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.168 4.168 23 C -0.197 4.197 24 O 0.041 5.959 25 N -0.054 5.054 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.195 0.805 38 H 0.230 0.770 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.614 -6.372 18.524 19.763 hybrid contribution -0.535 0.137 -0.636 0.842 sum 2.080 -6.235 17.888 19.058 Atomic orbital electron populations 1.21780 0.95476 1.01473 1.02287 1.21619 0.96367 0.94738 1.02747 1.19685 0.96233 0.95433 0.91348 1.21576 0.93536 1.02168 0.98403 1.21808 1.01341 1.01180 0.96572 1.23483 0.92639 0.99954 0.97809 1.22711 1.02832 1.02370 0.91048 1.24873 0.90547 1.01364 0.96117 1.16634 0.84423 0.80826 0.81513 1.90843 1.28092 1.53357 1.67509 1.46549 1.24689 1.47624 1.14476 1.18966 0.95498 0.95097 0.73687 0.92811 1.21244 0.92538 1.48999 0.94616 0.91761 1.24871 0.96824 0.94782 0.97106 1.69895 1.25465 1.47655 1.08867 0.86375 0.83126 0.78013 0.79512 1.19638 1.20827 1.20861 1.21962 0.93150 0.98218 1.03438 1.21862 0.98298 0.99438 1.00106 1.84979 1.39950 1.55504 1.15489 1.73706 1.20396 1.13478 0.97812 0.92651 0.92604 0.92742 0.91423 0.90711 0.89405 0.91105 0.91416 0.92623 0.92328 0.92411 0.80503 0.77049 0.92517 0.87935 0.94702 0.95529 0.94472 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.61 37.15 0.36 -1.11 16 2 C -0.12 -1.01 5.26 -26.73 -0.14 -1.15 16 3 C -0.01 -0.08 2.32 -91.78 -0.21 -0.29 16 4 C -0.12 -0.98 4.91 -26.74 -0.13 -1.11 16 5 C -0.15 -0.99 9.53 37.16 0.35 -0.63 16 6 C 0.02 0.25 5.34 -82.16 -0.44 -0.19 16 7 C -0.17 -2.37 10.17 -38.95 -0.40 -2.77 16 8 C -0.06 -1.03 7.29 -36.32 -0.26 -1.30 16 9 C 0.58 11.48 6.39 -12.48 -0.08 11.40 16 10 O -0.52 -11.54 14.05 5.29 0.07 -11.46 16 11 N -0.69 -14.04 5.02 -55.98 -0.28 -14.32 16 12 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 13 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.03 11.29 55.43 0.63 -23.41 16 18 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 23 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 24 O 0.11 1.77 11.04 15.55 0.17 1.95 16 25 N -0.35 -5.28 11.85 33.52 0.40 -4.88 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.51 6.51 -51.93 -0.34 0.18 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 35 H 0.06 0.34 6.78 -51.93 -0.35 -0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.18 2.24 7.83 -52.49 -0.41 1.83 16 38 H 0.40 7.27 8.37 -40.82 -0.34 6.93 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.78 5.64 -51.93 -0.29 0.48 16 44 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -28.10 356.21 -6.98 -35.08 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.98 Total: 5.48 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.33 Total: -9.05 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.74 Total: -42.61 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.25 Total: -9.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.10 -6.98 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.466 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds