Wall clock time and date at job start Tue Mar 31 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 H 1.08998 * 109.47410 * 54.99785 * 3 2 1 5 5 C 1.50702 * 109.47217 * 175.00198 * 3 2 1 6 6 H 1.07998 * 119.99812 * 119.99953 * 5 3 2 7 7 C 1.37878 * 120.00009 * 299.99393 * 5 3 2 8 8 N 1.31509 * 120.00255 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99600 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47000 * 89.99971 * 9 7 5 11 11 H 1.48494 * 109.46623 * 209.99449 * 9 7 5 12 12 H 1.48498 * 109.47096 * 329.99818 * 9 7 5 13 13 N 1.46509 * 109.47051 * 295.00025 * 3 2 1 14 14 C 1.34776 * 120.00156 * 84.99783 * 13 3 2 15 15 O 1.21281 * 119.99779 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00074 * 180.02562 * 14 13 3 17 17 C 1.52995 * 109.47032 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47375 * 304.99469 * 17 16 14 19 19 C 1.52997 * 109.47068 * 65.00076 * 17 16 14 20 20 C 1.50701 * 109.47018 * 185.00075 * 17 16 14 21 21 C 1.41378 * 128.00776 * 305.79399 * 20 17 16 22 22 C 1.50704 * 126.80004 * 359.97438 * 21 20 17 23 23 N 1.30173 * 106.39607 * 179.97438 * 21 20 17 24 24 O 1.20918 * 111.60517 * 359.97438 * 23 21 20 25 25 C 1.34033 * 111.56818 * 359.76315 * 24 23 21 26 26 C 1.50699 * 126.77868 * 180.28393 * 25 24 23 27 27 H 1.09002 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47348 * 300.00562 * 1 2 3 29 29 H 1.09006 * 109.46884 * 60.00313 * 1 2 3 30 30 H 1.09004 * 109.47301 * 240.00190 * 2 1 3 31 31 H 1.09000 * 109.47399 * 120.00152 * 2 1 3 32 32 H 0.96998 * 120.00172 * 179.97438 * 8 7 5 33 33 H 0.96996 * 119.99816 * 265.00120 * 13 3 2 34 34 H 1.09002 * 109.47011 * 60.00224 * 16 14 13 35 35 H 1.08999 * 109.46947 * 300.00092 * 16 14 13 36 36 H 1.08993 * 109.47231 * 54.22575 * 19 17 16 37 37 H 1.09005 * 109.46870 * 174.22155 * 19 17 16 38 38 H 1.09004 * 109.47293 * 294.21710 * 19 17 16 39 39 H 1.09003 * 109.46958 * 94.87978 * 22 21 20 40 40 H 1.09006 * 109.46669 * 214.87432 * 22 21 20 41 41 H 1.08990 * 109.47122 * 334.87355 * 22 21 20 42 42 H 1.09000 * 109.47449 * 265.01816 * 26 25 24 43 43 H 1.08998 * 109.47094 * 25.02242 * 26 25 24 44 44 H 1.09002 * 109.47404 * 145.01769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3272 2.2635 11 1 3.7937 0.2349 3.8751 12 1 1.7877 0.8075 2.6386 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0363 3.3377 -2.6549 17 6 -1.3829 3.8935 -2.5216 18 1 -2.0598 3.0935 -2.2217 19 6 -1.4002 4.9994 -1.4645 20 6 -1.8279 4.4577 -3.8462 21 6 -1.1747 5.4249 -4.6441 22 6 0.1302 6.1146 -4.3394 23 7 -1.9236 5.6016 -5.6941 24 8 -2.9112 4.9049 -5.6589 25 6 -2.9430 4.1508 -4.5513 26 6 -4.0103 3.1594 -4.1650 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8770 0.4818 2.1128 33 1 2.2719 2.1231 -1.9978 34 1 0.0673 2.6129 -3.4685 35 1 0.7277 4.1529 -2.8680 36 1 -0.6494 5.7499 -1.7115 37 1 -2.3856 5.4649 -1.4419 38 1 -1.1781 4.5712 -0.4870 39 1 0.9457 5.5813 -4.8278 40 1 0.0940 7.1397 -4.7083 41 1 0.2944 6.1218 -3.2620 42 1 -4.7336 3.6419 -3.5076 43 1 -4.5162 2.8023 -5.0620 44 1 -3.5530 2.3170 -3.6461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183812970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:22 Heat of formation + Delta-G solvation = 4.005462 kcal Electronic energy + Delta-G solvation = -24448.337043 eV Core-core repulsion = 20982.617383 eV Total energy + Delta-G solvation = -3465.719660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.00981 -39.51866 -36.78282 -35.24070 -33.86963 -32.53556 -32.36212 -31.50484 -28.90578 -28.28116 -27.72102 -26.91544 -23.93668 -22.67356 -21.29286 -20.30410 -20.08711 -19.54482 -17.74920 -17.29018 -16.81099 -16.01692 -15.68804 -15.45162 -14.57754 -14.36089 -14.17714 -13.68009 -13.54675 -13.40426 -13.32635 -13.18462 -12.92115 -12.85606 -12.57922 -12.42796 -12.28110 -11.90018 -11.80859 -11.51024 -11.27546 -11.24362 -11.05100 -10.86471 -10.64581 -10.53515 -9.94543 -9.89724 -9.56874 -9.27000 -9.20759 -9.02348 -8.76949 -8.06251 -6.23159 -4.25701 1.36179 2.11385 3.00504 3.20647 3.24099 3.33607 3.37943 3.88380 4.14940 4.29383 4.35241 4.63036 4.83753 5.02150 5.06639 5.10595 5.19636 5.21621 5.25381 5.35021 5.45446 5.51480 5.58930 5.60897 5.69541 5.83140 5.86555 5.93930 5.99571 6.00208 6.06506 6.16411 6.29104 6.49826 6.63892 6.67686 6.82856 6.93023 7.25419 7.29984 7.50674 8.13916 8.19672 8.52271 8.74334 8.94543 9.37940 10.88961 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.003683 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.319901 B = 7600.423735 C = 8142.551571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.702 5.702 14 C 0.504 3.496 15 O -0.548 6.548 16 C -0.140 4.140 17 C 0.007 3.993 18 H 0.090 0.910 19 C -0.149 4.149 20 C -0.188 4.188 21 C 0.028 3.972 22 C -0.083 4.083 23 N -0.371 5.371 24 O 0.093 5.907 25 C -0.035 4.035 26 C -0.074 4.074 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 5.428 -10.652 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.290 3.710 15 O -0.428 6.428 16 C -0.180 4.180 17 C -0.012 4.012 18 H 0.108 0.892 19 C -0.206 4.206 20 C -0.192 4.192 21 C -0.131 4.131 22 C -0.140 4.140 23 N -0.078 5.078 24 O 0.028 5.972 25 C -0.098 4.098 26 C -0.131 4.131 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.582 6.122 -10.948 20.003 hybrid contribution 0.162 -0.874 0.925 1.282 sum -15.420 5.249 -10.023 19.125 Atomic orbital electron populations 1.21868 0.96943 0.98944 1.02242 1.22284 0.94367 1.00049 1.01035 1.19129 0.95533 0.88450 0.82984 0.93316 1.21066 0.88712 1.39787 1.07803 0.90257 1.24839 0.94848 0.95144 0.97688 1.69865 1.08712 1.44529 1.29818 0.86899 0.80956 0.79942 0.80899 1.20282 1.22201 1.18457 1.46195 1.14974 1.55864 1.17893 1.20337 0.82477 0.79045 0.89180 1.90625 1.51429 1.59940 1.40811 1.21806 0.97542 1.01431 0.97192 1.19152 0.95665 0.98003 0.88402 0.89151 1.21964 1.01083 0.97343 1.00205 1.21079 0.96200 1.01574 1.00318 1.23414 0.99540 0.98668 0.91503 1.20341 0.90442 0.99897 1.03338 1.73812 0.97303 1.14472 1.22199 1.84777 1.34507 1.40668 1.37222 1.24237 0.99432 0.98039 0.88142 1.20343 0.94815 0.95357 1.02589 0.95102 0.92857 0.92906 0.92399 0.92859 0.92287 0.77273 0.89450 0.89009 0.93058 0.93222 0.89382 0.89981 0.90635 0.89481 0.89435 0.90003 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.51 37.15 0.32 -2.41 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.50 1.83 -69.08 -0.13 5.38 16 4 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 5 C -0.54 -14.10 9.31 -34.44 -0.32 -14.42 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 9 Si 0.88 21.37 24.41 -169.99 -4.15 17.22 16 10 H -0.28 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.20 6.53 56.52 0.37 -5.84 16 13 N -0.70 -12.91 5.02 -54.93 -0.28 -13.18 16 14 C 0.50 8.38 6.14 -10.99 -0.07 8.31 16 15 O -0.55 -10.53 11.11 5.56 0.06 -10.47 16 16 C -0.14 -1.72 4.94 -27.89 -0.14 -1.86 16 17 C 0.01 0.08 2.30 -91.78 -0.21 -0.13 16 18 H 0.09 1.09 7.04 -51.93 -0.37 0.72 16 19 C -0.15 -1.83 8.81 37.16 0.33 -1.50 16 20 C -0.19 -2.15 4.95 -104.42 -0.52 -2.67 16 21 C 0.03 0.33 7.23 -82.10 -0.59 -0.26 16 22 C -0.08 -0.80 9.17 36.01 0.33 -0.47 16 23 N -0.37 -4.96 12.07 33.42 0.40 -4.56 16 24 O 0.09 1.14 11.20 17.20 0.19 1.33 16 25 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 26 C -0.07 -0.51 10.12 36.01 0.36 -0.15 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 29 H 0.05 0.97 5.64 -51.93 -0.29 0.67 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.22 3.21 -51.93 -0.17 1.05 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.39 6.46 8.54 -40.82 -0.35 6.11 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.02 6.07 -51.93 -0.32 0.70 16 36 H 0.05 0.59 6.10 -51.93 -0.32 0.27 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.29 6.08 -51.93 -0.32 0.98 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.80 5.19 -51.93 -0.27 0.53 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.61 7.53 -51.93 -0.39 0.22 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -31.05 340.92 -5.51 -36.56 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.52 Total: 5.13 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.13 Total: -11.85 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.90 Total: -43.06 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.25 Total: -9.14 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.15 Total: 17.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -5.51 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.566 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds