Wall clock time and date at job start Tue Mar 31 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 H 1.08998 * 109.47410 * 54.99785 * 3 2 1 5 5 C 1.50702 * 109.47217 * 175.00198 * 3 2 1 6 6 H 1.07998 * 119.99812 * 119.99953 * 5 3 2 7 7 C 1.37878 * 120.00009 * 299.99393 * 5 3 2 8 8 N 1.31509 * 120.00255 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99600 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47000 * 89.99971 * 9 7 5 11 11 H 1.48494 * 109.46623 * 209.99449 * 9 7 5 12 12 H 1.48498 * 109.47096 * 329.99818 * 9 7 5 13 13 N 1.46509 * 109.47051 * 295.00025 * 3 2 1 14 14 C 1.34776 * 120.00156 * 84.99783 * 13 3 2 15 15 O 1.21281 * 119.99779 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00074 * 180.02562 * 14 13 3 17 17 C 1.52995 * 109.47032 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47375 * 304.99469 * 17 16 14 19 19 C 1.52997 * 109.47068 * 65.00076 * 17 16 14 20 20 C 1.50701 * 109.47018 * 185.00075 * 17 16 14 21 21 C 1.41378 * 128.00776 * 305.79399 * 20 17 16 22 22 C 1.50704 * 126.80004 * 359.97438 * 21 20 17 23 23 N 1.30173 * 106.39607 * 179.97438 * 21 20 17 24 24 O 1.20918 * 111.60517 * 359.97438 * 23 21 20 25 25 C 1.34033 * 111.56818 * 359.76315 * 24 23 21 26 26 C 1.50699 * 126.77868 * 180.28393 * 25 24 23 27 27 H 1.09002 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47348 * 300.00562 * 1 2 3 29 29 H 1.09006 * 109.46884 * 60.00313 * 1 2 3 30 30 H 1.09004 * 109.47301 * 240.00190 * 2 1 3 31 31 H 1.09000 * 109.47399 * 120.00152 * 2 1 3 32 32 H 0.96998 * 120.00172 * 179.97438 * 8 7 5 33 33 H 0.96996 * 119.99816 * 265.00120 * 13 3 2 34 34 H 1.09002 * 109.47011 * 60.00224 * 16 14 13 35 35 H 1.08999 * 109.46947 * 300.00092 * 16 14 13 36 36 H 1.08993 * 109.47231 * 54.22575 * 19 17 16 37 37 H 1.09005 * 109.46870 * 174.22155 * 19 17 16 38 38 H 1.09004 * 109.47293 * 294.21710 * 19 17 16 39 39 H 1.09003 * 109.46958 * 94.87978 * 22 21 20 40 40 H 1.09006 * 109.46669 * 214.87432 * 22 21 20 41 41 H 1.08990 * 109.47122 * 334.87355 * 22 21 20 42 42 H 1.09000 * 109.47449 * 265.01816 * 26 25 24 43 43 H 1.08998 * 109.47094 * 25.02242 * 26 25 24 44 44 H 1.09002 * 109.47404 * 145.01769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3272 2.2635 11 1 3.7937 0.2349 3.8751 12 1 1.7877 0.8075 2.6386 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0363 3.3377 -2.6549 17 6 -1.3829 3.8935 -2.5216 18 1 -2.0598 3.0935 -2.2217 19 6 -1.4002 4.9994 -1.4645 20 6 -1.8279 4.4577 -3.8462 21 6 -1.1747 5.4249 -4.6441 22 6 0.1302 6.1146 -4.3394 23 7 -1.9236 5.6016 -5.6941 24 8 -2.9112 4.9049 -5.6589 25 6 -2.9430 4.1508 -4.5513 26 6 -4.0103 3.1594 -4.1650 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8770 0.4818 2.1128 33 1 2.2719 2.1231 -1.9978 34 1 0.0673 2.6129 -3.4685 35 1 0.7277 4.1529 -2.8680 36 1 -0.6494 5.7499 -1.7115 37 1 -2.3856 5.4649 -1.4419 38 1 -1.1781 4.5712 -0.4870 39 1 0.9457 5.5813 -4.8278 40 1 0.0940 7.1397 -4.7083 41 1 0.2944 6.1218 -3.2620 42 1 -4.7336 3.6419 -3.5076 43 1 -4.5162 2.8023 -5.0620 44 1 -3.5530 2.3170 -3.6461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183812970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:21 Heat of formation + Delta-G solvation = -15.980293 kcal Electronic energy + Delta-G solvation = -24449.203690 eV Core-core repulsion = 20982.617383 eV Total energy + Delta-G solvation = -3466.586308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.88990 -40.89951 -37.92768 -36.74446 -34.70638 -34.35308 -33.52921 -32.95433 -29.83433 -29.64783 -28.49426 -28.29915 -25.01236 -24.39729 -22.63179 -21.47748 -21.04434 -20.95950 -19.04130 -18.61521 -17.77781 -17.58617 -17.28463 -16.67705 -16.08406 -15.55303 -15.25228 -15.12599 -14.66384 -14.46678 -14.35186 -14.06692 -13.97555 -13.81887 -13.70570 -13.61201 -13.47385 -13.43854 -13.13884 -12.89424 -12.73320 -12.39549 -12.34130 -12.23090 -12.15059 -11.80621 -11.44578 -11.33015 -11.19126 -10.83967 -10.77103 -10.47837 -10.02683 -9.64770 -8.36133 -6.41180 0.53068 1.24180 1.28498 1.36674 1.46116 1.90408 2.22402 2.27648 2.57866 3.00281 3.26623 3.57572 3.71260 3.88826 4.09662 4.22470 4.28627 4.32466 4.37972 4.41791 4.47392 4.56331 4.64101 4.68185 4.71804 4.76234 4.83278 4.89742 4.90598 4.93680 5.06426 5.09602 5.15310 5.18756 5.24905 5.28979 5.35974 5.45000 5.51324 5.58405 5.76659 6.18354 6.62015 6.99257 7.23003 7.34474 7.58352 8.79167 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.003683 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.319901 B = 7600.423735 C = 8142.551571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.024 0.976 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.937 3.063 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.258 1.258 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.572 6.572 16 C -0.129 4.129 17 C 0.017 3.983 18 H 0.090 0.910 19 C -0.146 4.146 20 C -0.202 4.202 21 C 0.024 3.976 22 C -0.085 4.085 23 N -0.400 5.400 24 O 0.082 5.918 25 C -0.025 4.025 26 C -0.076 4.076 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.404 0.596 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 4.897 -11.451 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.575 5.575 9 Si 0.765 3.235 10 H -0.188 1.188 11 H -0.224 1.224 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.453 6.453 16 C -0.169 4.169 17 C -0.003 4.003 18 H 0.108 0.892 19 C -0.203 4.203 20 C -0.206 4.206 21 C -0.135 4.135 22 C -0.142 4.142 23 N -0.109 5.109 24 O 0.020 5.980 25 C -0.088 4.088 26 C -0.133 4.133 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.528 5.592 -11.779 21.846 hybrid contribution 0.741 -0.637 1.117 1.484 sum -16.787 4.955 -10.662 20.495 Atomic orbital electron populations 1.21753 0.94900 1.00451 1.01849 1.22206 0.96130 0.98579 1.00747 1.18735 0.92850 0.89625 0.84249 0.95829 1.21349 0.90696 1.38263 1.06747 0.92704 1.25561 0.95680 0.95966 0.99930 1.69981 1.10356 1.46357 1.30837 0.86025 0.79397 0.79876 0.78239 1.18775 1.22367 1.18197 1.46059 1.16161 1.56371 1.16802 1.21004 0.81283 0.78121 0.90304 1.90627 1.51947 1.60532 1.42149 1.21785 0.98213 1.01935 0.94924 1.19014 0.95161 0.97683 0.88423 0.89183 1.21901 1.01752 0.97634 0.99012 1.20997 0.96954 1.02315 1.00324 1.23794 0.99992 0.98534 0.91163 1.20442 0.89828 1.00224 1.03744 1.73811 0.98089 1.15708 1.23261 1.84752 1.34374 1.40945 1.37906 1.24865 0.99640 0.97294 0.87040 1.20555 0.94240 0.94723 1.03737 0.92613 0.94339 0.92190 0.91597 0.94183 0.92200 0.76117 0.87508 0.87482 0.92419 0.92476 0.91929 0.88891 0.90137 0.89018 0.88018 0.88266 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.51 71.98 0.61 -4.12 16 2 C -0.14 -5.69 5.11 30.59 0.16 -5.53 16 3 C 0.25 11.23 1.83 44.24 0.08 11.31 16 4 H 0.02 1.19 6.64 -2.39 -0.02 1.18 16 5 C -0.53 -28.28 9.31 25.60 0.24 -28.05 16 6 H 0.05 3.11 7.98 -2.91 -0.02 3.09 16 7 C 0.03 1.56 5.45 84.66 0.46 2.02 16 8 N -0.94 -55.71 13.96 21.45 0.30 -55.41 16 9 Si 0.94 44.11 24.41 68.60 1.67 45.78 16 10 H -0.26 -11.64 6.83 99.48 0.68 -10.96 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.26 -11.91 6.53 99.48 0.65 -11.26 16 13 N -0.70 -25.14 5.02 -446.08 -2.24 -27.38 16 14 C 0.51 15.96 6.14 87.66 0.54 16.50 16 15 O -0.57 -21.27 11.11 -3.03 -0.03 -21.31 16 16 C -0.13 -2.86 4.94 29.85 0.15 -2.71 16 17 C 0.02 0.35 2.30 -11.54 -0.03 0.33 16 18 H 0.09 1.95 7.04 -2.39 -0.02 1.93 16 19 C -0.15 -3.37 8.81 71.98 0.63 -2.73 16 20 C -0.20 -4.18 4.95 -19.73 -0.10 -4.27 16 21 C 0.02 0.53 7.23 43.58 0.31 0.84 16 22 C -0.09 -1.49 9.17 71.24 0.65 -0.83 16 23 N -0.40 -10.16 12.07 -49.56 -0.60 -10.76 16 24 O 0.08 1.89 11.20 71.71 0.80 2.69 16 25 C -0.03 -0.47 7.49 25.04 0.19 -0.28 16 26 C -0.08 -0.82 10.12 71.24 0.72 -0.10 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 29 H 0.06 2.04 5.64 -2.38 -0.01 2.03 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.04 1.75 3.21 -2.39 -0.01 1.75 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.40 12.77 8.54 -92.71 -0.79 11.98 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 2.09 6.07 -2.39 -0.01 2.08 16 36 H 0.06 1.23 6.10 -2.39 -0.01 1.21 16 37 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 38 H 0.06 1.79 6.08 -2.38 -0.01 1.77 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 41 H 0.09 1.49 5.19 -2.39 -0.01 1.48 16 42 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 1.00 7.53 -2.39 -0.02 0.98 16 Total: -1.00 -67.14 340.92 4.68 -62.46 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.15 Total: 21.54 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.62 Total: -17.63 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -2.54 Total: -93.54 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.77 Total: -18.62 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.67 Total: 45.78 kcal Total: -67.14 4.68 -62.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.483 kcal (2) G-P(sol) polarization free energy of solvation -67.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds