Wall clock time and date at job start Tue Mar 31 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50698 * 109.47518 * 174.42146 * 3 2 1 6 6 H 1.07996 * 119.99793 * 114.19753 * 5 3 2 7 7 C 1.37877 * 120.00033 * 294.20040 * 5 3 2 8 8 N 1.31513 * 120.00341 * 159.34252 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34293 * 7 5 3 10 10 H 1.48496 * 109.47030 * 270.00296 * 9 7 5 11 11 H 1.48506 * 109.47036 * 30.00169 * 9 7 5 12 12 H 1.48499 * 109.47212 * 149.99563 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34771 * 120.00414 * 84.99488 * 13 3 2 15 15 O 1.21285 * 119.99953 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00073 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46985 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47106 * 55.00402 * 17 16 14 19 19 C 1.53004 * 109.47559 * 295.00231 * 17 16 14 20 20 C 1.50703 * 109.47192 * 174.99987 * 17 16 14 21 21 C 1.41381 * 128.00613 * 59.67916 * 20 17 16 22 22 C 1.50702 * 126.80024 * 0.03598 * 21 20 17 23 23 N 1.30175 * 106.39782 * 179.89616 * 21 20 17 24 24 O 1.20923 * 111.60398 * 0.39178 * 23 21 20 25 25 C 1.34046 * 111.56359 * 359.74741 * 24 23 21 26 26 C 1.50702 * 126.77407 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 31 31 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 32 32 H 0.97006 * 119.99800 * 354.92965 * 8 7 5 33 33 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 34 34 H 1.08994 * 109.47433 * 299.99967 * 16 14 13 35 35 H 1.09007 * 109.47231 * 60.00535 * 16 14 13 36 36 H 1.08996 * 109.46964 * 300.00031 * 19 17 16 37 37 H 1.08994 * 109.46868 * 59.99869 * 19 17 16 38 38 H 1.08991 * 109.47244 * 180.02562 * 19 17 16 39 39 H 1.09004 * 109.47373 * 89.99783 * 22 21 20 40 40 H 1.09003 * 109.47204 * 209.99759 * 22 21 20 41 41 H 1.09000 * 109.47158 * 330.00003 * 22 21 20 42 42 H 1.09003 * 109.46792 * 269.99659 * 26 25 24 43 43 H 1.09002 * 109.47056 * 29.99224 * 26 25 24 44 44 H 1.08992 * 109.47148 * 149.99849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4448 0.1381 6 1 4.1571 1.8011 -0.6739 7 6 4.1267 0.9919 1.3011 8 7 5.3846 0.6082 1.2976 9 14 3.1338 0.9232 2.8819 10 1 3.2700 2.2113 3.6083 11 1 1.7039 0.6860 2.5585 12 1 3.6381 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3862 15 8 -0.3353 2.6304 -0.4609 16 6 0.0621 3.3298 -2.6797 17 6 -1.3584 3.8858 -2.5617 18 1 -1.4198 4.5449 -1.6957 19 6 -2.3464 2.7297 -2.3939 20 6 -1.6994 4.6612 -3.8082 21 6 -1.7347 4.1936 -5.1419 22 6 -1.4348 2.7951 -5.6165 23 7 -2.0804 5.2097 -5.8785 24 8 -2.2499 6.2050 -5.2130 25 6 -2.0373 5.9688 -3.9107 26 6 -2.1524 6.9621 -2.7832 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8788 0.5738 0.4636 33 1 2.2909 2.1165 -1.9977 34 1 0.7554 4.1445 -2.8880 35 1 0.1011 2.6030 -3.4911 36 1 -2.2850 2.0707 -3.2599 37 1 -2.0998 2.1689 -1.4924 38 1 -3.3584 3.1258 -2.3104 39 1 -2.3525 2.2068 -5.6167 40 1 -1.0277 2.8337 -6.6269 41 1 -0.7074 2.3331 -4.9491 42 1 -1.1894 7.4488 -2.6281 43 1 -2.9023 7.7121 -3.0347 44 1 -2.4485 6.4438 -1.8712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183812997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:27 Heat of formation + Delta-G solvation = -3.657370 kcal Electronic energy + Delta-G solvation = -24468.113259 eV Core-core repulsion = 21002.061313 eV Total energy + Delta-G solvation = -3466.051946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.01812 -39.51494 -36.75948 -35.18456 -33.88006 -32.53984 -32.41001 -31.45906 -28.93661 -28.16886 -27.68858 -26.75132 -23.90933 -22.38103 -21.16589 -20.28769 -20.02323 -19.50585 -17.85977 -17.68488 -16.86189 -16.33114 -15.73147 -15.03900 -14.69466 -14.41120 -13.75881 -13.69779 -13.47462 -13.34926 -13.22589 -13.21175 -12.94437 -12.71870 -12.56132 -12.49732 -12.37678 -12.02760 -11.74700 -11.48630 -11.24525 -11.15063 -10.81108 -10.72766 -10.56644 -10.47991 -9.91602 -9.90008 -9.72137 -9.24343 -9.12841 -9.04764 -8.33925 -8.07547 -6.60933 -4.23653 1.35345 2.09633 2.99720 3.23243 3.38971 3.43263 3.58279 3.89641 4.14284 4.34123 4.41914 4.62445 4.82729 4.98685 5.04928 5.11186 5.18416 5.21265 5.26370 5.29731 5.43462 5.50418 5.57416 5.60104 5.67911 5.81676 5.88332 5.98262 6.04433 6.07162 6.07474 6.25418 6.27245 6.46593 6.69372 6.77544 6.95550 7.02538 7.34921 7.41228 7.66184 8.18250 8.22233 8.47805 8.68982 8.98333 9.43708 10.77520 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.003617 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.842317 B = 7738.600303 C = 7833.588844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.248 3.752 4 H 0.044 0.956 5 C -0.623 4.623 6 H 0.061 0.939 7 C 0.044 3.956 8 N -0.894 5.894 9 Si 1.034 2.966 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.548 6.548 16 C -0.140 4.140 17 C 0.007 3.993 18 H 0.091 0.909 19 C -0.150 4.150 20 C -0.188 4.188 21 C 0.027 3.973 22 C -0.081 4.081 23 N -0.371 5.371 24 O 0.093 5.907 25 C -0.034 4.034 26 C -0.075 4.075 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.270 0.730 33 H 0.391 0.609 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 7.405 -10.274 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.145 3.855 4 H 0.061 0.939 5 C -0.661 4.661 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.526 5.526 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.350 5.350 14 C 0.288 3.712 15 O -0.428 6.428 16 C -0.180 4.180 17 C -0.012 4.012 18 H 0.109 0.891 19 C -0.207 4.207 20 C -0.192 4.192 21 C -0.132 4.132 22 C -0.139 4.139 23 N -0.078 5.078 24 O 0.028 5.972 25 C -0.097 4.097 26 C -0.132 4.132 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.113 7.194 -9.293 19.145 hybrid contribution 0.560 0.089 -1.492 1.596 sum -14.553 7.283 -10.785 19.523 Atomic orbital electron populations 1.21900 0.97375 0.98793 1.02036 1.22197 0.93759 0.99778 1.01011 1.19090 0.95673 0.88503 0.82283 0.93866 1.22059 0.89844 1.49431 1.04726 0.92090 1.25643 0.96850 0.91984 1.01842 1.70833 1.10554 1.40171 1.31059 0.84180 0.76414 0.77395 0.75906 1.21013 1.19295 1.21009 1.46300 1.14667 1.55950 1.18098 1.20336 0.82567 0.79169 0.89121 1.90624 1.50582 1.60185 1.41408 1.21814 0.97409 1.01391 0.97379 1.19153 0.93717 0.96348 0.92024 0.89079 1.21973 0.97831 0.97547 1.03360 1.21076 1.08244 0.93746 0.96156 1.23394 1.01811 0.97538 0.90463 1.20332 1.02857 0.88522 1.02141 1.73815 1.19546 0.94567 1.19840 1.84779 1.65816 1.30654 1.15922 1.24259 1.02566 0.96397 0.86467 1.20361 1.04019 0.96413 0.92408 0.92920 0.93147 0.95236 0.93284 0.92276 0.91961 0.77592 0.89395 0.89244 0.93190 0.89365 0.93175 0.90145 0.90620 0.89611 0.89347 0.89980 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.16 0.32 -2.45 16 2 C -0.13 -2.77 5.03 -26.73 -0.13 -2.90 16 3 C 0.25 5.67 1.78 -69.08 -0.12 5.55 16 4 H 0.04 1.08 5.99 -51.93 -0.31 0.77 16 5 C -0.62 -16.39 8.97 -34.44 -0.31 -16.69 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.27 16 7 C 0.04 1.21 5.25 -17.82 -0.09 1.12 16 8 N -0.89 -26.18 13.70 55.43 0.76 -25.42 16 9 Si 1.03 24.53 26.33 -169.99 -4.48 20.05 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.02 5.88 56.52 0.33 -5.69 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.70 -13.25 5.03 -54.93 -0.28 -13.52 16 14 C 0.50 8.53 6.14 -10.99 -0.07 8.46 16 15 O -0.55 -10.67 11.11 5.55 0.06 -10.61 16 16 C -0.14 -1.77 5.02 -27.88 -0.14 -1.91 16 17 C 0.01 0.08 2.33 -91.77 -0.21 -0.13 16 18 H 0.09 1.14 6.94 -51.93 -0.36 0.78 16 19 C -0.15 -1.82 8.84 37.16 0.33 -1.50 16 20 C -0.19 -2.19 4.93 -104.42 -0.51 -2.71 16 21 C 0.03 0.32 7.20 -82.10 -0.59 -0.27 16 22 C -0.08 -0.78 9.13 36.01 0.33 -0.45 16 23 N -0.37 -4.98 12.07 33.42 0.40 -4.58 16 24 O 0.09 1.15 11.20 17.16 0.19 1.34 16 25 C -0.03 -0.36 7.49 -35.30 -0.26 -0.63 16 26 C -0.07 -0.54 10.17 36.01 0.37 -0.18 16 27 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 28 H 0.05 0.93 5.63 -51.93 -0.29 0.64 16 29 H 0.03 0.50 8.14 -51.94 -0.42 0.08 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.33 5.64 -51.93 -0.29 1.04 16 32 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 33 H 0.39 6.66 8.53 -40.82 -0.35 6.31 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.99 5.51 -51.93 -0.29 0.71 16 36 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 37 H 0.09 1.28 5.95 -51.93 -0.31 0.97 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.76 5.35 -51.93 -0.28 0.48 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.64 7.39 -51.93 -0.38 0.26 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -30.81 343.70 -5.91 -36.72 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.64 Total: 5.51 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.11 Total: -14.67 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.89 Total: -43.53 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.25 Total: -9.26 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.48 Total: 20.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.81 -5.91 -36.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.062 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds