Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50698 * 109.47518 * 174.42146 * 3 2 1 6 6 H 1.07996 * 119.99793 * 114.19753 * 5 3 2 7 7 C 1.37877 * 120.00033 * 294.20040 * 5 3 2 8 8 N 1.31513 * 120.00341 * 159.34252 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34293 * 7 5 3 10 10 H 1.48496 * 109.47030 * 270.00296 * 9 7 5 11 11 H 1.48506 * 109.47036 * 30.00169 * 9 7 5 12 12 H 1.48499 * 109.47212 * 149.99563 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34771 * 120.00414 * 84.99488 * 13 3 2 15 15 O 1.21285 * 119.99953 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00073 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46985 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47106 * 55.00402 * 17 16 14 19 19 C 1.53004 * 109.47559 * 295.00231 * 17 16 14 20 20 C 1.50703 * 109.47192 * 174.99987 * 17 16 14 21 21 C 1.41381 * 128.00613 * 59.67916 * 20 17 16 22 22 C 1.50702 * 126.80024 * 0.03598 * 21 20 17 23 23 N 1.30175 * 106.39782 * 179.89616 * 21 20 17 24 24 O 1.20923 * 111.60398 * 0.39178 * 23 21 20 25 25 C 1.34046 * 111.56359 * 359.74741 * 24 23 21 26 26 C 1.50702 * 126.77407 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 31 31 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 32 32 H 0.97006 * 119.99800 * 354.92965 * 8 7 5 33 33 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 34 34 H 1.08994 * 109.47433 * 299.99967 * 16 14 13 35 35 H 1.09007 * 109.47231 * 60.00535 * 16 14 13 36 36 H 1.08996 * 109.46964 * 300.00031 * 19 17 16 37 37 H 1.08994 * 109.46868 * 59.99869 * 19 17 16 38 38 H 1.08991 * 109.47244 * 180.02562 * 19 17 16 39 39 H 1.09004 * 109.47373 * 89.99783 * 22 21 20 40 40 H 1.09003 * 109.47204 * 209.99759 * 22 21 20 41 41 H 1.09000 * 109.47158 * 330.00003 * 22 21 20 42 42 H 1.09003 * 109.46792 * 269.99659 * 26 25 24 43 43 H 1.09002 * 109.47056 * 29.99224 * 26 25 24 44 44 H 1.08992 * 109.47148 * 149.99849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4448 0.1381 6 1 4.1571 1.8011 -0.6739 7 6 4.1267 0.9919 1.3011 8 7 5.3846 0.6082 1.2976 9 14 3.1338 0.9232 2.8819 10 1 3.2700 2.2113 3.6083 11 1 1.7039 0.6860 2.5585 12 1 3.6381 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3862 15 8 -0.3353 2.6304 -0.4609 16 6 0.0621 3.3298 -2.6797 17 6 -1.3584 3.8858 -2.5617 18 1 -1.4198 4.5449 -1.6957 19 6 -2.3464 2.7297 -2.3939 20 6 -1.6994 4.6612 -3.8082 21 6 -1.7347 4.1936 -5.1419 22 6 -1.4348 2.7951 -5.6165 23 7 -2.0804 5.2097 -5.8785 24 8 -2.2499 6.2050 -5.2130 25 6 -2.0373 5.9688 -3.9107 26 6 -2.1524 6.9621 -2.7832 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8788 0.5738 0.4636 33 1 2.2909 2.1165 -1.9977 34 1 0.7554 4.1445 -2.8880 35 1 0.1011 2.6030 -3.4911 36 1 -2.2850 2.0707 -3.2599 37 1 -2.0998 2.1689 -1.4924 38 1 -3.3584 3.1258 -2.3104 39 1 -2.3525 2.2068 -5.6167 40 1 -1.0277 2.8337 -6.6269 41 1 -0.7074 2.3331 -4.9491 42 1 -1.1894 7.4488 -2.6281 43 1 -2.9023 7.7121 -3.0347 44 1 -2.4485 6.4438 -1.8712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183812997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = -22.941480 kcal Electronic energy + Delta-G solvation = -24468.949480 eV Core-core repulsion = 21002.061313 eV Total energy + Delta-G solvation = -3466.888167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.90598 -40.91133 -37.90097 -36.72951 -34.72776 -34.42469 -33.50529 -32.94612 -29.76389 -29.53417 -28.47348 -28.22454 -24.95579 -24.15948 -22.46756 -21.41088 -21.07426 -21.00397 -19.71382 -18.64403 -17.93076 -17.55267 -17.21927 -16.43700 -15.95085 -15.33810 -15.31672 -14.78103 -14.64891 -14.46033 -14.41595 -14.21677 -14.05039 -13.86954 -13.79650 -13.70633 -13.45863 -13.40103 -13.07964 -12.63687 -12.44533 -12.33705 -12.27841 -12.21885 -12.17346 -11.67659 -11.51058 -11.45001 -11.12229 -10.79022 -10.53449 -10.43073 -10.04896 -9.68370 -8.77381 -6.40340 0.50491 1.21904 1.49156 1.50423 1.71767 1.88368 2.19617 2.45179 2.58728 3.00275 3.24846 3.55332 3.69025 3.86796 4.06451 4.18659 4.28096 4.37167 4.39859 4.45935 4.46506 4.59452 4.62415 4.67641 4.70269 4.74974 4.81370 4.84689 4.92740 4.96524 5.08806 5.14813 5.18048 5.21990 5.28053 5.34280 5.37700 5.49626 5.60802 5.75070 5.77826 6.04958 6.57245 6.95837 7.31541 7.31786 7.56012 8.59780 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.003617 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.842317 B = 7738.600303 C = 7833.588844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.253 3.747 4 H 0.026 0.974 5 C -0.618 4.618 6 H 0.038 0.962 7 C -0.001 4.001 8 N -0.927 5.927 9 Si 1.069 2.931 10 H -0.276 1.276 11 H -0.250 1.250 12 H -0.282 1.282 13 N -0.708 5.708 14 C 0.504 3.496 15 O -0.570 6.570 16 C -0.129 4.129 17 C 0.015 3.985 18 H 0.086 0.914 19 C -0.146 4.146 20 C -0.202 4.202 21 C 0.024 3.976 22 C -0.083 4.083 23 N -0.399 5.399 24 O 0.081 5.919 25 C -0.026 4.026 26 C -0.076 4.076 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.259 0.741 33 H 0.400 0.600 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 7.773 -10.729 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.148 3.852 4 H 0.043 0.957 5 C -0.656 4.656 6 H 0.056 0.944 7 C -0.202 4.202 8 N -0.561 5.561 9 Si 0.891 3.109 10 H -0.202 1.202 11 H -0.174 1.174 12 H -0.208 1.208 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.451 6.451 16 C -0.169 4.169 17 C -0.004 4.004 18 H 0.104 0.896 19 C -0.203 4.203 20 C -0.206 4.206 21 C -0.134 4.134 22 C -0.140 4.140 23 N -0.108 5.108 24 O 0.020 5.980 25 C -0.089 4.089 26 C -0.133 4.133 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.909 7.595 -9.776 20.956 hybrid contribution 1.104 0.037 -1.417 1.796 sum -15.805 7.632 -11.193 20.816 Atomic orbital electron populations 1.21774 0.95272 1.00233 1.01710 1.22104 0.95547 0.98412 1.00546 1.18755 0.93095 0.89614 0.83703 0.95651 1.22264 0.91840 1.47790 1.03678 0.94357 1.26753 0.96976 0.91657 1.04831 1.70933 1.11742 1.42928 1.30507 0.83727 0.76258 0.77745 0.73164 1.20184 1.17428 1.20811 1.46165 1.15886 1.56537 1.17062 1.20979 0.81330 0.78243 0.90279 1.90624 1.51022 1.60738 1.42708 1.21786 0.98075 1.01852 0.95175 1.19022 0.93088 0.96207 0.92074 0.89573 1.21907 0.98177 0.97553 1.02686 1.21012 1.09694 0.94172 0.95764 1.23809 1.00839 0.98203 0.90585 1.20449 1.03632 0.87369 1.02599 1.73814 1.21141 0.95158 1.20724 1.84755 1.66114 1.30595 1.16572 1.24863 1.00633 0.96901 0.86505 1.20555 1.05313 0.96244 0.91232 0.94173 0.92516 0.92900 0.93012 0.93554 0.93145 0.76586 0.88174 0.87194 0.92033 0.91605 0.92606 0.89039 0.90067 0.88842 0.88162 0.88154 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.53 71.98 0.61 -4.19 16 2 C -0.13 -5.30 5.03 30.59 0.15 -5.15 16 3 C 0.25 11.39 1.78 44.25 0.08 11.47 16 4 H 0.03 1.25 5.99 -2.38 -0.01 1.24 16 5 C -0.62 -32.71 8.97 25.60 0.23 -32.48 16 6 H 0.04 2.16 7.96 -2.91 -0.02 2.13 16 7 C 0.00 -0.05 5.25 84.65 0.44 0.40 16 8 N -0.93 -55.26 13.70 21.45 0.29 -54.97 16 9 Si 1.07 49.33 26.33 68.60 1.81 51.14 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.25 -10.75 5.88 99.48 0.59 -10.16 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.71 -25.79 5.03 -446.09 -2.24 -28.03 16 14 C 0.50 16.19 6.14 87.66 0.54 16.72 16 15 O -0.57 -21.30 11.11 -3.05 -0.03 -21.34 16 16 C -0.13 -2.94 5.02 29.85 0.15 -2.79 16 17 C 0.02 0.34 2.33 -11.54 -0.03 0.31 16 18 H 0.09 1.97 6.94 -2.38 -0.02 1.95 16 19 C -0.15 -3.23 8.84 71.98 0.64 -2.60 16 20 C -0.20 -4.26 4.93 -19.73 -0.10 -4.36 16 21 C 0.02 0.54 7.20 43.58 0.31 0.85 16 22 C -0.08 -1.39 9.13 71.24 0.65 -0.74 16 23 N -0.40 -10.18 12.07 -49.55 -0.60 -10.78 16 24 O 0.08 1.91 11.20 71.57 0.80 2.71 16 25 C -0.03 -0.50 7.49 25.04 0.19 -0.32 16 26 C -0.08 -0.92 10.17 71.24 0.72 -0.19 16 27 H 0.04 1.54 7.88 -2.39 -0.02 1.53 16 28 H 0.06 1.97 5.63 -2.38 -0.01 1.95 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 32 H 0.26 15.49 8.73 -92.70 -0.81 14.68 16 33 H 0.40 13.14 8.53 -92.71 -0.79 12.35 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 2.09 5.51 -2.38 -0.01 2.07 16 36 H 0.06 1.19 6.75 -2.39 -0.02 1.18 16 37 H 0.07 1.79 5.95 -2.39 -0.01 1.77 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.32 8.12 -2.38 -0.02 1.30 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.37 5.35 -2.39 -0.01 1.36 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.12 7.39 -2.39 -0.02 1.10 16 Total: -1.00 -66.33 343.70 4.70 -61.63 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.07 Total: 22.70 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.60 Total: -23.07 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -2.55 Total: -93.78 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.77 Total: -18.63 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.81 Total: 51.14 kcal Total: -66.33 4.70 -61.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.693 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds