Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69668 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69425 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69689 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21273 * 119.99804 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99663 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46760 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47391 * 55.00099 * 17 16 14 19 19 C 1.53003 * 109.47544 * 295.00175 * 17 16 14 20 20 C 1.50698 * 109.47132 * 174.99862 * 17 16 14 21 21 C 1.41384 * 128.00457 * 59.68351 * 20 17 16 22 22 C 1.50701 * 126.79966 * 0.02565 * 21 20 17 23 23 N 1.30176 * 106.39598 * 179.89624 * 21 20 17 24 24 O 1.20923 * 111.60453 * 0.38624 * 23 21 20 25 25 C 1.34050 * 111.56439 * 359.74609 * 24 23 21 26 26 C 1.50701 * 126.77401 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46878 * 59.99263 * 1 2 3 28 28 H 1.09004 * 109.46880 * 299.99827 * 1 2 3 29 29 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46878 * 120.00737 * 2 1 3 31 31 H 1.09004 * 109.46880 * 240.00173 * 2 1 3 32 32 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 34 34 H 1.09002 * 109.47208 * 300.00005 * 16 14 13 35 35 H 1.08999 * 109.47155 * 60.00335 * 16 14 13 36 36 H 1.09006 * 109.46876 * 59.99619 * 19 17 16 37 37 H 1.08997 * 109.47638 * 180.02562 * 19 17 16 38 38 H 1.09006 * 109.46714 * 300.00338 * 19 17 16 39 39 H 1.08999 * 109.46796 * 90.00833 * 22 21 20 40 40 H 1.09000 * 109.47033 * 210.00344 * 22 21 20 41 41 H 1.08997 * 109.47706 * 330.00402 * 22 21 20 42 42 H 1.08998 * 109.47248 * 270.00124 * 26 25 24 43 43 H 1.09002 * 109.47200 * 30.00146 * 26 25 24 44 44 H 1.08999 * 109.46648 * 150.00073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4447 -0.1410 6 1 4.1651 1.3332 0.7330 7 6 4.1157 1.5892 -1.3856 8 7 5.4205 1.4963 -1.5217 9 14 3.0419 1.9171 -2.8784 10 1 2.7755 3.3740 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3343 2.6301 0.4664 16 6 0.0669 3.3269 2.6853 17 6 -1.3537 3.8833 2.5704 18 1 -2.0340 3.0845 2.2749 19 6 -1.3831 4.9935 1.5180 20 6 -1.7836 4.4421 3.9022 21 6 -1.1785 5.4807 4.6468 22 6 0.0479 6.2689 4.2649 23 7 -1.8923 5.6230 5.7260 24 8 -2.8149 4.8419 5.7559 25 6 -2.8356 4.0619 4.6659 26 6 -3.8322 2.9757 4.3525 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5140 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 5.8252 1.5977 -2.3975 33 1 2.2949 2.1149 1.9978 34 1 0.1071 2.5988 3.4956 35 1 0.7607 4.1413 2.8938 36 1 -1.0721 4.5892 0.5546 37 1 -2.3950 5.3902 1.4364 38 1 -0.7027 5.7923 1.8135 39 1 -0.2489 7.1481 3.6931 40 1 0.5735 6.5825 5.1668 41 1 0.7059 5.6463 3.6588 42 1 -3.4759 2.0281 4.7565 43 1 -4.7935 3.2239 4.8023 44 1 -3.9479 2.8896 3.2721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -3.935323 kcal Electronic energy + Delta-G solvation = -24456.112570 eV Core-core repulsion = 20990.048571 eV Total energy + Delta-G solvation = -3466.063999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.99605 -39.47291 -36.73804 -35.12174 -33.85545 -32.49491 -32.35695 -31.44630 -28.89437 -28.27961 -27.70683 -26.88866 -23.91000 -22.78018 -21.12487 -20.24960 -19.93121 -19.53491 -17.74412 -17.35202 -16.80080 -16.09073 -15.55714 -15.43718 -14.50665 -14.34540 -14.01609 -13.70835 -13.51458 -13.39748 -13.24290 -13.18410 -12.92503 -12.80750 -12.54595 -12.36694 -12.20255 -11.93799 -11.81745 -11.46107 -11.22639 -11.20915 -10.96080 -10.70326 -10.65455 -10.51350 -10.00724 -9.88183 -9.86865 -9.26330 -9.19736 -9.01828 -8.71975 -8.00105 -6.26181 -4.29871 1.37207 2.12337 3.01546 3.22598 3.28187 3.31984 3.38670 3.91949 4.16908 4.29878 4.36392 4.65364 4.84548 5.01735 5.07561 5.10752 5.18993 5.23756 5.29994 5.34723 5.47216 5.53668 5.61178 5.63555 5.72308 5.83995 5.92478 6.01638 6.03123 6.06082 6.10428 6.22966 6.30807 6.51657 6.62988 6.75830 6.95879 6.98262 7.26358 7.34778 7.56284 8.11978 8.20666 8.56315 8.74870 8.98673 9.36173 10.85583 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003837 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.054996 B = 7295.425996 C = 7738.365533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.140 4.140 17 C 0.007 3.993 18 H 0.090 0.910 19 C -0.150 4.150 20 C -0.187 4.187 21 C 0.028 3.972 22 C -0.082 4.082 23 N -0.371 5.371 24 O 0.093 5.907 25 C -0.035 4.035 26 C -0.074 4.074 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 4.483 10.817 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.287 3.713 15 O -0.431 6.431 16 C -0.180 4.180 17 C -0.012 4.012 18 H 0.108 0.892 19 C -0.208 4.208 20 C -0.191 4.191 21 C -0.131 4.131 22 C -0.139 4.139 23 N -0.078 5.078 24 O 0.028 5.972 25 C -0.099 4.099 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.086 5.262 11.067 19.436 hybrid contribution 0.122 -0.159 -1.024 1.044 sum -14.963 5.103 10.043 18.730 Atomic orbital electron populations 1.21899 0.97411 0.98759 1.02029 1.22072 0.93681 0.99536 1.01147 1.19148 0.95415 0.89060 0.82934 0.93111 1.21026 0.88784 1.51733 0.95427 0.90426 1.24940 0.94856 0.93693 0.98806 1.69888 1.09790 1.48340 1.24496 0.86903 0.81273 0.79594 0.82226 1.19892 1.21255 1.18337 1.46630 1.14547 1.55853 1.18155 1.20376 0.82682 0.79116 0.89091 1.90616 1.50798 1.60056 1.41650 1.21826 0.97552 1.01345 0.97317 1.19153 0.95742 0.98048 0.88280 0.89172 1.21972 1.01290 0.97306 1.00186 1.21086 0.97636 1.00184 1.00225 1.23411 0.99778 0.98319 0.91604 1.20344 0.92037 0.99131 1.02431 1.73817 1.00136 1.12156 1.21675 1.84779 1.38881 1.35899 1.37644 1.24243 0.99901 0.97618 0.88100 1.20348 0.95757 0.93489 1.03539 0.93097 0.93117 0.95224 0.93110 0.92198 0.92244 0.77453 0.89468 0.89059 0.89415 0.93229 0.93084 0.90130 0.90598 0.89477 0.89415 0.90013 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.53 37.16 0.32 -2.40 16 2 C -0.13 -2.61 5.59 -26.73 -0.15 -2.76 16 3 C 0.24 5.34 1.89 -69.08 -0.13 5.21 16 4 H 0.05 1.26 4.73 -51.93 -0.25 1.01 16 5 C -0.53 -13.85 9.05 -34.44 -0.31 -14.16 16 6 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.87 21.08 26.99 -169.99 -4.59 16.49 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.13 6.82 56.52 0.39 -5.75 16 13 N -0.70 -13.10 5.03 -54.93 -0.28 -13.37 16 14 C 0.50 8.51 6.15 -10.98 -0.07 8.44 16 15 O -0.55 -10.78 11.11 5.56 0.06 -10.71 16 16 C -0.14 -1.78 5.02 -27.88 -0.14 -1.92 16 17 C 0.01 0.09 2.33 -91.77 -0.21 -0.13 16 18 H 0.09 1.11 6.94 -51.93 -0.36 0.75 16 19 C -0.15 -1.91 8.84 37.16 0.33 -1.58 16 20 C -0.19 -2.19 4.93 -104.42 -0.51 -2.71 16 21 C 0.03 0.34 7.20 -82.10 -0.59 -0.25 16 22 C -0.08 -0.82 9.13 36.01 0.33 -0.49 16 23 N -0.37 -5.03 12.07 33.42 0.40 -4.62 16 24 O 0.09 1.15 11.20 17.15 0.19 1.34 16 25 C -0.04 -0.38 7.49 -35.30 -0.26 -0.64 16 26 C -0.07 -0.52 10.17 36.01 0.37 -0.16 16 27 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 28 H 0.05 0.93 5.63 -51.93 -0.29 0.64 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.39 6.52 8.59 -40.82 -0.35 6.17 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.05 5.51 -51.93 -0.29 0.76 16 36 H 0.09 1.34 5.95 -51.93 -0.31 1.03 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.60 6.76 -51.93 -0.35 0.25 16 39 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.82 5.35 -51.93 -0.28 0.54 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.63 7.39 -51.93 -0.38 0.24 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -30.76 347.53 -5.98 -36.74 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.64 Total: 5.30 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.14 Total: -11.42 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.90 Total: -42.97 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.25 Total: -9.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.76 -5.98 -36.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.802 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds