Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69668 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69425 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69689 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21273 * 119.99804 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99663 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46760 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47391 * 55.00099 * 17 16 14 19 19 C 1.53003 * 109.47544 * 295.00175 * 17 16 14 20 20 C 1.50698 * 109.47132 * 174.99862 * 17 16 14 21 21 C 1.41384 * 128.00457 * 59.68351 * 20 17 16 22 22 C 1.50701 * 126.79966 * 0.02565 * 21 20 17 23 23 N 1.30176 * 106.39598 * 179.89624 * 21 20 17 24 24 O 1.20923 * 111.60453 * 0.38624 * 23 21 20 25 25 C 1.34050 * 111.56439 * 359.74609 * 24 23 21 26 26 C 1.50701 * 126.77401 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46878 * 59.99263 * 1 2 3 28 28 H 1.09004 * 109.46880 * 299.99827 * 1 2 3 29 29 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46878 * 120.00737 * 2 1 3 31 31 H 1.09004 * 109.46880 * 240.00173 * 2 1 3 32 32 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 34 34 H 1.09002 * 109.47208 * 300.00005 * 16 14 13 35 35 H 1.08999 * 109.47155 * 60.00335 * 16 14 13 36 36 H 1.09006 * 109.46876 * 59.99619 * 19 17 16 37 37 H 1.08997 * 109.47638 * 180.02562 * 19 17 16 38 38 H 1.09006 * 109.46714 * 300.00338 * 19 17 16 39 39 H 1.08999 * 109.46796 * 90.00833 * 22 21 20 40 40 H 1.09000 * 109.47033 * 210.00344 * 22 21 20 41 41 H 1.08997 * 109.47706 * 330.00402 * 22 21 20 42 42 H 1.08998 * 109.47248 * 270.00124 * 26 25 24 43 43 H 1.09002 * 109.47200 * 30.00146 * 26 25 24 44 44 H 1.08999 * 109.46648 * 150.00073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4447 -0.1410 6 1 4.1651 1.3332 0.7330 7 6 4.1157 1.5892 -1.3856 8 7 5.4205 1.4963 -1.5217 9 14 3.0419 1.9171 -2.8784 10 1 2.7755 3.3740 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3343 2.6301 0.4664 16 6 0.0669 3.3269 2.6853 17 6 -1.3537 3.8833 2.5704 18 1 -2.0340 3.0845 2.2749 19 6 -1.3831 4.9935 1.5180 20 6 -1.7836 4.4421 3.9022 21 6 -1.1785 5.4807 4.6468 22 6 0.0479 6.2689 4.2649 23 7 -1.8923 5.6230 5.7260 24 8 -2.8149 4.8419 5.7559 25 6 -2.8356 4.0619 4.6659 26 6 -3.8322 2.9757 4.3525 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5140 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 5.8252 1.5977 -2.3975 33 1 2.2949 2.1149 1.9978 34 1 0.1071 2.5988 3.4956 35 1 0.7607 4.1413 2.8938 36 1 -1.0721 4.5892 0.5546 37 1 -2.3950 5.3902 1.4364 38 1 -0.7027 5.7923 1.8135 39 1 -0.2489 7.1481 3.6931 40 1 0.5735 6.5825 5.1668 41 1 0.7059 5.6463 3.6588 42 1 -3.4759 2.0281 4.7565 43 1 -4.7935 3.2239 4.8023 44 1 -3.9479 2.8896 3.2721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -22.897272 kcal Electronic energy + Delta-G solvation = -24456.934822 eV Core-core repulsion = 20990.048571 eV Total energy + Delta-G solvation = -3466.886250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.89270 -40.86814 -37.87417 -36.64922 -34.71018 -34.35110 -33.50450 -32.88147 -29.83823 -29.66547 -28.49157 -28.27864 -25.02315 -24.45895 -22.37168 -21.34980 -21.07387 -20.97387 -19.16661 -18.62012 -17.78854 -17.55858 -17.18321 -16.65347 -16.05164 -15.45633 -15.24540 -14.89381 -14.75873 -14.43742 -14.41300 -14.00931 -13.91723 -13.76243 -13.73429 -13.64030 -13.58781 -13.39289 -13.10685 -12.89810 -12.57159 -12.37754 -12.26141 -12.20532 -12.15554 -11.85178 -11.60169 -11.44933 -11.16674 -10.81362 -10.77448 -10.47896 -10.02778 -9.58113 -8.36953 -6.42328 0.52593 1.23208 1.30676 1.35296 1.45513 1.92107 2.21959 2.28708 2.58028 3.05660 3.26970 3.57196 3.71890 3.89792 4.08246 4.23045 4.29999 4.37150 4.41339 4.47317 4.48828 4.59971 4.63065 4.69504 4.72362 4.76859 4.83111 4.86756 4.89272 4.98014 5.08647 5.16191 5.19155 5.24319 5.31202 5.33112 5.36476 5.45150 5.51038 5.61415 5.87786 6.17302 6.63823 7.02607 7.24416 7.33901 7.60158 8.78251 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003837 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.054996 B = 7295.425996 C = 7738.365533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.243 3.757 4 H 0.032 0.968 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.926 3.074 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.253 1.253 13 N -0.708 5.708 14 C 0.503 3.497 15 O -0.574 6.574 16 C -0.130 4.130 17 C 0.017 3.983 18 H 0.090 0.910 19 C -0.148 4.148 20 C -0.202 4.202 21 C 0.024 3.976 22 C -0.084 4.084 23 N -0.399 5.399 24 O 0.082 5.918 25 C -0.024 4.024 26 C -0.076 4.076 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.269 0.731 33 H 0.403 0.597 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 4.344 11.628 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C 0.139 3.861 4 H 0.050 0.950 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.751 3.249 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.177 1.177 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.455 6.455 16 C -0.170 4.170 17 C -0.003 4.003 18 H 0.108 0.892 19 C -0.205 4.205 20 C -0.206 4.206 21 C -0.135 4.135 22 C -0.141 4.141 23 N -0.108 5.108 24 O 0.020 5.980 25 C -0.088 4.088 26 C -0.133 4.133 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.237 0.763 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.033 5.122 11.907 21.404 hybrid contribution 0.683 -0.114 -1.194 1.381 sum -16.349 5.008 10.713 20.178 Atomic orbital electron populations 1.21763 0.95485 1.00219 1.01451 1.21986 0.95314 0.98091 1.00924 1.18851 0.92874 0.90248 0.84171 0.95044 1.21268 0.90649 1.50123 0.94404 0.92822 1.25606 0.95693 0.94045 1.01432 1.69994 1.11352 1.50637 1.25178 0.86063 0.80000 0.79296 0.79553 1.19946 1.20741 1.17714 1.46392 1.15755 1.56388 1.17146 1.21008 0.81488 0.78199 0.90237 1.90618 1.51320 1.60635 1.42976 1.21799 0.98250 1.01871 0.95042 1.19012 0.95234 0.97707 0.88323 0.89184 1.21911 1.01850 0.97698 0.99023 1.20996 0.98516 1.00844 1.00240 1.23781 1.00068 0.98368 0.91283 1.20439 0.91433 0.99344 1.02920 1.73816 1.01023 1.13290 1.22681 1.84755 1.38773 1.36117 1.38305 1.24870 0.99771 0.97149 0.86988 1.20562 0.95753 0.92816 1.04150 0.94703 0.92592 0.92731 0.92231 0.93580 0.92174 0.76284 0.87465 0.87618 0.92046 0.92546 0.92326 0.89288 0.90030 0.88929 0.87912 0.88230 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.53 71.98 0.61 -4.08 16 2 C -0.12 -5.02 5.59 30.59 0.17 -4.85 16 3 C 0.24 10.78 1.89 44.24 0.08 10.86 16 4 H 0.03 1.54 4.73 -2.39 -0.01 1.53 16 5 C -0.53 -27.62 9.05 25.60 0.23 -27.39 16 6 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 7 C 0.03 1.79 5.47 84.65 0.46 2.25 16 8 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16 9 Si 0.93 43.73 26.99 68.60 1.85 45.58 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.25 -11.60 6.82 99.48 0.68 -10.92 16 13 N -0.71 -25.41 5.03 -446.10 -2.24 -27.66 16 14 C 0.50 16.14 6.15 87.66 0.54 16.68 16 15 O -0.57 -21.64 11.11 -3.01 -0.03 -21.67 16 16 C -0.13 -2.96 5.02 29.85 0.15 -2.81 16 17 C 0.02 0.36 2.33 -11.54 -0.03 0.34 16 18 H 0.09 1.99 6.94 -2.38 -0.02 1.98 16 19 C -0.15 -3.51 8.84 71.98 0.64 -2.88 16 20 C -0.20 -4.26 4.93 -19.74 -0.10 -4.36 16 21 C 0.02 0.54 7.20 43.58 0.31 0.85 16 22 C -0.08 -1.52 9.13 71.24 0.65 -0.87 16 23 N -0.40 -10.26 12.07 -49.55 -0.60 -10.85 16 24 O 0.08 1.91 11.20 71.54 0.80 2.71 16 25 C -0.02 -0.47 7.49 25.04 0.19 -0.28 16 26 C -0.08 -0.84 10.17 71.24 0.72 -0.12 16 27 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 28 H 0.06 1.92 5.63 -2.38 -0.01 1.90 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.40 12.84 8.59 -92.71 -0.80 12.04 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.11 2.15 5.51 -2.39 -0.01 2.13 16 36 H 0.06 1.81 5.95 -2.38 -0.01 1.80 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.27 6.76 -2.38 -0.02 1.25 16 39 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.53 5.35 -2.39 -0.01 1.52 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 1.03 7.39 -2.39 -0.02 1.01 16 Total: -1.00 -66.31 347.53 4.91 -61.40 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.19 Total: 21.86 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.64 Total: -16.65 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -2.54 Total: -93.23 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.77 Total: -18.96 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.85 Total: 45.58 kcal Total: -66.31 4.91 -61.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.499 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds