Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47144 * 2 1 4 4 N 1.46494 * 109.47352 * 120.00631 * 2 1 3 5 5 C 1.46500 * 119.99811 * 295.07507 * 4 2 1 6 6 C 1.50699 * 109.47224 * 90.00111 * 5 4 2 7 7 C 1.34510 * 125.79162 * 90.00100 * 6 5 4 8 8 C 1.41379 * 106.84485 * 180.02562 * 7 6 5 9 9 C 1.34521 * 106.83878 * 0.02562 * 8 7 6 10 10 O 1.34298 * 108.41725 * 359.73210 * 9 8 7 11 11 C 1.34781 * 120.00380 * 115.07765 * 4 2 1 12 12 O 1.21581 * 119.99751 * 185.30907 * 11 4 2 13 13 N 1.34775 * 119.99786 * 5.30880 * 11 4 2 14 14 C 1.46497 * 119.99892 * 185.22717 * 13 11 4 15 15 C 1.52997 * 109.47150 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47398 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47388 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00089 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00023 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00013 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00028 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47528 * 89.99763 * 21 19 17 23 23 H 1.48501 * 109.47011 * 209.99931 * 21 19 17 24 24 H 1.48504 * 109.47156 * 329.99793 * 21 19 17 25 25 H 1.09002 * 109.46681 * 305.22228 * 1 2 3 26 26 H 1.08999 * 109.47194 * 65.22506 * 1 2 3 27 27 H 1.09001 * 109.46969 * 185.22519 * 1 2 3 28 28 H 1.09006 * 109.46737 * 240.00619 * 2 1 3 29 29 H 1.09002 * 109.47510 * 174.92139 * 3 2 1 30 30 H 1.09007 * 109.47315 * 294.92401 * 3 2 1 31 31 H 1.09005 * 109.46937 * 54.92624 * 3 2 1 32 32 H 1.08997 * 109.47189 * 210.00087 * 5 4 2 33 33 H 1.08998 * 109.47421 * 330.00211 * 5 4 2 34 34 H 1.08005 * 126.57728 * 0.03822 * 7 6 5 35 35 H 1.08001 * 126.58147 * 179.97438 * 8 7 6 36 36 H 1.08001 * 125.78710 * 180.02562 * 9 8 7 37 37 H 0.97002 * 120.00139 * 5.22871 * 13 11 4 38 38 H 1.09006 * 109.46940 * 299.99801 * 14 13 11 39 39 H 1.08995 * 109.47145 * 60.00311 * 14 13 11 40 40 H 1.09003 * 109.47252 * 300.00308 * 15 14 13 41 41 H 1.09000 * 109.47571 * 59.99635 * 15 14 13 42 42 H 1.08994 * 109.47340 * 300.00460 * 16 15 14 43 43 H 1.09009 * 109.46777 * 60.00127 * 16 15 14 44 44 H 0.97002 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7556 -0.1305 2.5240 6 6 0.4523 -0.6745 3.0497 7 6 0.3049 -1.7932 3.7818 8 6 -1.0759 -1.9250 4.0553 9 6 -1.6899 -0.8790 3.4734 10 8 -0.7587 -0.1220 2.8705 11 6 2.7095 -1.8415 1.0748 12 8 3.0312 -2.4649 2.0678 13 7 3.0439 -2.3011 -0.1472 14 6 3.6935 -3.6068 -0.2862 15 6 3.9643 -3.8868 -1.7657 16 6 4.6433 -5.2502 -1.9109 17 6 4.9094 -5.5263 -3.3682 18 1 4.6233 -4.8017 -4.1161 19 6 5.5182 -6.7041 -3.7468 20 7 5.7509 -6.9448 -5.0186 21 14 6.0124 -7.9578 -2.4533 22 1 4.8892 -8.9017 -2.2241 23 1 7.2034 -8.7103 -2.9229 24 1 6.3376 -7.2580 -1.1844 25 1 -0.3633 0.5927 0.8396 26 1 -0.3633 0.4306 -0.9331 27 1 -0.3633 -1.0234 0.0936 28 1 1.8933 -0.5138 -0.8901 29 1 3.1262 1.4439 0.0910 30 1 1.7528 1.9294 -0.9320 31 1 1.6044 1.9819 0.8411 32 1 2.5640 -0.4064 3.2011 33 1 1.6945 0.9555 2.4546 34 1 1.0907 -2.4624 4.0999 35 1 -1.5474 -2.7143 4.6218 36 1 -2.7511 -0.6792 3.4923 37 1 2.8546 -1.7673 -0.9347 38 1 4.6362 -3.6037 0.2611 39 1 3.0417 -4.3816 0.1172 40 1 3.0218 -3.8897 -2.3134 41 1 4.6163 -3.1119 -2.1689 42 1 5.5857 -5.2469 -1.3633 43 1 3.9915 -6.0254 -1.5077 44 1 6.1795 -7.7732 -5.2850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264049878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = -17.765749 kcal Electronic energy + Delta-G solvation = -23832.926934 eV Core-core repulsion = 20366.263203 eV Total energy + Delta-G solvation = -3466.663731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.67792 -40.29986 -36.97583 -35.57340 -33.48557 -33.11909 -32.29649 -31.54955 -30.08728 -27.58675 -27.28637 -25.81494 -22.87856 -22.14898 -21.81727 -20.83114 -20.49619 -19.28708 -18.36270 -17.54217 -16.78504 -16.38940 -15.85806 -15.72966 -14.84203 -14.68025 -14.49361 -14.27782 -14.14015 -13.83804 -13.35727 -13.10912 -13.02392 -12.77169 -12.68768 -12.47024 -12.35061 -11.99419 -11.91598 -11.71641 -11.52636 -11.28717 -10.97482 -10.88509 -10.24225 -10.01777 -9.98004 -9.81652 -9.67879 -9.22272 -9.12967 -8.70338 -8.55418 -8.54377 -6.05936 -4.04555 1.51091 2.41058 2.78245 2.87997 3.28823 3.32072 3.39561 3.44227 3.87979 4.45122 4.48955 4.51804 4.73046 4.80218 4.88400 4.96761 5.13345 5.28336 5.31425 5.31959 5.41951 5.52508 5.56536 5.61305 5.70012 5.71995 5.82989 5.90118 5.95017 6.04565 6.07074 6.28395 6.40198 6.41356 6.47603 6.68286 6.82838 6.88712 7.05078 7.24078 7.37560 7.76129 7.98413 8.50580 8.64359 8.97914 9.56446 11.07330 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003064 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.101188 B = 9137.103751 C = 9760.848295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 C -0.164 4.164 4 N -0.624 5.624 5 C 0.215 3.785 6 C -0.035 4.035 7 C -0.181 4.181 8 C -0.216 4.216 9 C -0.045 4.045 10 O -0.175 6.175 11 C 0.706 3.294 12 O -0.586 6.586 13 N -0.741 5.741 14 C 0.132 3.868 15 C -0.113 4.113 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.199 0.801 37 H 0.394 0.606 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 18.625 15.400 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.027 3.973 3 C -0.222 4.222 4 N -0.362 5.362 5 C 0.091 3.909 6 C -0.086 4.086 7 C -0.201 4.201 8 C -0.236 4.236 9 C -0.113 4.113 10 O -0.071 6.071 11 C 0.407 3.593 12 O -0.464 6.464 13 N -0.397 5.397 14 C 0.009 3.991 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.188 1.188 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.216 0.784 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.307 18.264 15.816 27.583 hybrid contribution -0.060 -0.848 0.223 0.879 sum -13.368 17.415 16.039 27.189 Atomic orbital electron populations 1.22233 0.94587 1.02834 1.02647 1.21142 0.94884 0.93627 0.87624 1.22191 1.01909 0.95361 1.02762 1.47345 1.57845 1.24893 1.06074 1.19557 0.89560 0.97773 0.83979 1.22943 0.85918 0.96689 1.03015 1.21760 0.97039 0.98670 1.02638 1.21893 0.94378 1.01274 1.06015 1.23982 0.94335 0.93164 0.99835 1.84000 1.15549 1.46928 1.60621 1.15921 0.78604 0.80409 0.84339 1.90898 1.60434 1.58398 1.36655 1.45545 1.65067 1.22501 1.06616 1.21526 0.96884 0.81897 0.98840 1.21703 1.01021 1.00481 0.91870 1.19495 0.95530 0.91722 0.98095 1.21097 1.39407 1.04457 0.90996 0.91028 1.25027 0.95205 0.98053 0.95195 1.69913 1.43333 1.25635 1.15377 0.86776 0.78336 0.81650 0.82549 1.20250 1.21379 1.18848 0.91290 0.91545 0.92393 0.89387 0.91781 0.91070 0.92001 0.86915 0.88952 0.83191 0.83710 0.78416 0.76924 0.91824 0.92084 0.92240 0.92137 0.96254 0.96747 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.44 37.16 0.31 -1.11 16 2 C 0.13 1.15 3.24 -67.93 -0.22 0.93 16 3 C -0.16 -1.10 8.94 37.16 0.33 -0.77 16 4 N -0.62 -7.04 2.39 -173.17 -0.41 -7.45 16 5 C 0.22 2.18 5.49 -5.19 -0.03 2.15 16 6 C -0.03 -0.39 6.11 -35.63 -0.22 -0.61 16 7 C -0.18 -2.24 10.81 -39.71 -0.43 -2.67 16 8 C -0.22 -2.27 10.91 -39.70 -0.43 -2.71 16 9 C -0.05 -0.41 12.09 29.42 0.36 -0.06 16 10 O -0.17 -1.83 8.53 5.72 0.05 -1.78 16 11 C 0.71 10.57 8.26 -86.92 -0.72 9.85 16 12 O -0.59 -10.77 15.99 5.29 0.08 -10.68 16 13 N -0.74 -10.64 5.44 -65.23 -0.35 -11.00 16 14 C 0.13 2.23 5.68 -4.04 -0.02 2.21 16 15 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 16 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 21 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.07 0.60 5.83 -51.93 -0.30 0.30 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.76 5.48 -51.93 -0.28 0.47 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 6.77 -51.93 -0.35 0.03 16 32 H 0.11 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.09 0.69 6.29 -51.93 -0.33 0.37 16 34 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 35 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.39 4.72 5.91 -40.82 -0.24 4.48 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -33.73 357.09 -7.80 -41.53 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.90 Total: 2.50 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.75 Total: -8.61 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.01 Total: -45.50 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.13 Total: -12.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.73 -7.80 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264049878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.768 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds