Wall clock time and date at job start Tue Mar 31 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47144 * 2 1 4 4 N 1.46494 * 109.47352 * 120.00631 * 2 1 3 5 5 C 1.46500 * 119.99811 * 295.07507 * 4 2 1 6 6 C 1.50699 * 109.47224 * 90.00111 * 5 4 2 7 7 C 1.34510 * 125.79162 * 90.00100 * 6 5 4 8 8 C 1.41379 * 106.84485 * 180.02562 * 7 6 5 9 9 C 1.34521 * 106.83878 * 0.02562 * 8 7 6 10 10 O 1.34298 * 108.41725 * 359.73210 * 9 8 7 11 11 C 1.34781 * 120.00380 * 115.07765 * 4 2 1 12 12 O 1.21581 * 119.99751 * 185.30907 * 11 4 2 13 13 N 1.34775 * 119.99786 * 5.30880 * 11 4 2 14 14 C 1.46497 * 119.99892 * 185.22717 * 13 11 4 15 15 C 1.52997 * 109.47150 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47398 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47388 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00089 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00023 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00013 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00028 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47528 * 89.99763 * 21 19 17 23 23 H 1.48501 * 109.47011 * 209.99931 * 21 19 17 24 24 H 1.48504 * 109.47156 * 329.99793 * 21 19 17 25 25 H 1.09002 * 109.46681 * 305.22228 * 1 2 3 26 26 H 1.08999 * 109.47194 * 65.22506 * 1 2 3 27 27 H 1.09001 * 109.46969 * 185.22519 * 1 2 3 28 28 H 1.09006 * 109.46737 * 240.00619 * 2 1 3 29 29 H 1.09002 * 109.47510 * 174.92139 * 3 2 1 30 30 H 1.09007 * 109.47315 * 294.92401 * 3 2 1 31 31 H 1.09005 * 109.46937 * 54.92624 * 3 2 1 32 32 H 1.08997 * 109.47189 * 210.00087 * 5 4 2 33 33 H 1.08998 * 109.47421 * 330.00211 * 5 4 2 34 34 H 1.08005 * 126.57728 * 0.03822 * 7 6 5 35 35 H 1.08001 * 126.58147 * 179.97438 * 8 7 6 36 36 H 1.08001 * 125.78710 * 180.02562 * 9 8 7 37 37 H 0.97002 * 120.00139 * 5.22871 * 13 11 4 38 38 H 1.09006 * 109.46940 * 299.99801 * 14 13 11 39 39 H 1.08995 * 109.47145 * 60.00311 * 14 13 11 40 40 H 1.09003 * 109.47252 * 300.00308 * 15 14 13 41 41 H 1.09000 * 109.47571 * 59.99635 * 15 14 13 42 42 H 1.08994 * 109.47340 * 300.00460 * 16 15 14 43 43 H 1.09009 * 109.46777 * 60.00127 * 16 15 14 44 44 H 0.97002 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7556 -0.1305 2.5240 6 6 0.4523 -0.6745 3.0497 7 6 0.3049 -1.7932 3.7818 8 6 -1.0759 -1.9250 4.0553 9 6 -1.6899 -0.8790 3.4734 10 8 -0.7587 -0.1220 2.8705 11 6 2.7095 -1.8415 1.0748 12 8 3.0312 -2.4649 2.0678 13 7 3.0439 -2.3011 -0.1472 14 6 3.6935 -3.6068 -0.2862 15 6 3.9643 -3.8868 -1.7657 16 6 4.6433 -5.2502 -1.9109 17 6 4.9094 -5.5263 -3.3682 18 1 4.6233 -4.8017 -4.1161 19 6 5.5182 -6.7041 -3.7468 20 7 5.7509 -6.9448 -5.0186 21 14 6.0124 -7.9578 -2.4533 22 1 4.8892 -8.9017 -2.2241 23 1 7.2034 -8.7103 -2.9229 24 1 6.3376 -7.2580 -1.1844 25 1 -0.3633 0.5927 0.8396 26 1 -0.3633 0.4306 -0.9331 27 1 -0.3633 -1.0234 0.0936 28 1 1.8933 -0.5138 -0.8901 29 1 3.1262 1.4439 0.0910 30 1 1.7528 1.9294 -0.9320 31 1 1.6044 1.9819 0.8411 32 1 2.5640 -0.4064 3.2011 33 1 1.6945 0.9555 2.4546 34 1 1.0907 -2.4624 4.0999 35 1 -1.5474 -2.7143 4.6218 36 1 -2.7511 -0.6792 3.4923 37 1 2.8546 -1.7673 -0.9347 38 1 4.6362 -3.6037 0.2611 39 1 3.0417 -4.3816 0.1172 40 1 3.0218 -3.8897 -2.3134 41 1 4.6163 -3.1119 -2.1689 42 1 5.5857 -5.2469 -1.3633 43 1 3.9915 -6.0254 -1.5077 44 1 6.1795 -7.7732 -5.2850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264049878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:37 Heat of formation + Delta-G solvation = -38.785548 kcal Electronic energy + Delta-G solvation = -23833.838421 eV Core-core repulsion = 20366.263203 eV Total energy + Delta-G solvation = -3467.575218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.48167 -41.37620 -37.97175 -36.99669 -35.21090 -34.07482 -33.35566 -33.05040 -31.10551 -28.94406 -28.10018 -26.88100 -24.51026 -23.07836 -22.64117 -22.16003 -21.69812 -20.33113 -19.45762 -18.82300 -18.32918 -17.41927 -16.89048 -16.79352 -16.29494 -15.98545 -15.61448 -15.34638 -15.13586 -15.04612 -14.76106 -14.29983 -13.88605 -13.82616 -13.78862 -13.63697 -13.53366 -13.15946 -12.94047 -12.75638 -12.70672 -12.49412 -12.20465 -11.95562 -11.82902 -11.77427 -11.60104 -11.33241 -11.21666 -10.83306 -10.76063 -10.28083 -9.72285 -9.39704 -8.29374 -6.33070 0.68829 1.37006 1.38633 1.50559 1.53522 1.86510 1.96601 2.22899 2.36541 2.88155 3.06497 3.76382 3.80073 4.00078 4.09601 4.13103 4.17068 4.21482 4.26020 4.37243 4.49817 4.51726 4.73289 4.78291 4.86571 4.89739 4.90926 4.97331 5.00949 5.03411 5.05267 5.18292 5.28653 5.37868 5.40920 5.47936 5.52488 5.55780 5.57480 5.65305 5.84840 6.22568 6.27646 6.74719 6.90776 7.31768 7.49954 8.87060 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003064 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.101188 B = 9137.103751 C = 9760.848295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.615 5.615 5 C 0.213 3.787 6 C -0.038 4.038 7 C -0.209 4.209 8 C -0.238 4.238 9 C -0.032 4.032 10 O -0.174 6.174 11 C 0.701 3.299 12 O -0.625 6.625 13 N -0.734 5.734 14 C 0.147 3.853 15 C -0.098 4.098 16 C -0.011 4.011 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.248 1.248 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.240 0.760 37 H 0.407 0.593 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.854 20.109 16.438 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.216 4.216 4 N -0.351 5.351 5 C 0.090 3.910 6 C -0.090 4.090 7 C -0.230 4.230 8 C -0.257 4.257 9 C -0.099 4.099 10 O -0.070 6.070 11 C 0.403 3.597 12 O -0.506 6.506 13 N -0.392 5.392 14 C 0.022 3.978 15 C -0.136 4.136 16 C -0.049 4.049 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.172 1.172 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.176 0.824 36 H 0.256 0.744 37 H 0.246 0.754 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.585 19.806 16.844 29.811 hybrid contribution 0.247 -1.235 -0.149 1.269 sum -14.338 18.571 16.694 28.795 Atomic orbital electron populations 1.22172 0.94159 1.01453 1.03774 1.21398 0.95162 0.94817 0.86420 1.22151 1.01603 0.93676 1.04140 1.47379 1.56611 1.23682 1.07474 1.19702 0.88818 0.99339 0.83183 1.22988 0.86623 0.96456 1.02904 1.21819 0.97784 0.99307 1.04055 1.22137 0.93692 1.02657 1.07203 1.24740 0.95585 0.91877 0.97739 1.84009 1.15362 1.46986 1.60636 1.16090 0.78806 0.81146 0.83707 1.90874 1.62025 1.59860 1.37835 1.45301 1.64901 1.21786 1.07236 1.21147 0.96606 0.83009 0.97029 1.21466 1.00791 0.98107 0.93274 1.19453 0.96176 0.94439 0.94842 1.21456 1.38734 1.03709 0.92878 0.94337 1.25966 0.95378 1.00465 0.97340 1.70055 1.44779 1.26614 1.17666 0.85713 0.78214 0.78967 0.80120 1.19297 1.20976 1.17157 0.91129 0.89575 0.94784 0.89299 0.92184 0.89350 0.91042 0.87976 0.85820 0.85268 0.82437 0.74436 0.75427 0.92549 0.92964 0.91869 0.91652 0.96029 0.96311 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.44 71.98 0.61 -1.74 16 2 C 0.12 1.91 3.24 44.99 0.15 2.06 16 3 C -0.16 -1.63 8.94 71.98 0.64 -0.99 16 4 N -0.62 -13.18 2.39 -820.07 -1.96 -15.14 16 5 C 0.21 4.09 5.49 85.63 0.47 4.56 16 6 C -0.04 -0.84 6.11 24.83 0.15 -0.69 16 7 C -0.21 -5.28 10.81 22.19 0.24 -5.04 16 8 C -0.24 -4.80 10.91 22.19 0.24 -4.56 16 9 C -0.03 -0.51 12.09 66.97 0.81 0.30 16 10 O -0.17 -3.28 8.53 -2.45 -0.02 -3.30 16 11 C 0.70 20.71 8.26 179.05 1.48 22.19 16 12 O -0.63 -23.31 15.99 -3.97 -0.06 -23.38 16 13 N -0.73 -20.45 5.44 -478.55 -2.60 -23.06 16 14 C 0.15 4.86 5.68 86.38 0.49 5.35 16 15 C -0.10 -3.61 5.27 30.59 0.16 -3.45 16 16 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 17 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 18 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 19 C 0.01 0.31 5.47 84.66 0.46 0.78 16 20 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 21 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.25 -10.99 6.54 99.48 0.65 -10.33 16 25 H 0.07 1.04 5.83 -2.39 -0.01 1.02 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 1.34 5.48 -2.38 -0.01 1.33 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.62 6.77 -2.38 -0.02 0.60 16 32 H 0.10 2.19 7.50 -2.39 -0.02 2.18 16 33 H 0.12 1.56 6.29 -2.39 -0.02 1.55 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.24 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.41 9.15 5.91 -92.71 -0.55 8.60 16 38 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 43 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.30 357.09 4.20 -70.10 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.39 Total: 19.02 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 6.27 Total: -11.57 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.26 Total: -97.44 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.08 Total: -26.68 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -74.30 4.20 -70.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264049878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.314 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds