Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 H 1.08993 * 109.47205 * 301.57552 * 3 2 1 5 5 C 1.50701 * 109.47403 * 181.57426 * 3 2 1 6 6 H 1.08005 * 119.99763 * 241.69281 * 5 3 2 7 7 C 1.37879 * 120.00077 * 61.69088 * 5 3 2 8 8 N 1.31510 * 119.99727 * 356.30369 * 7 5 3 9 9 Si 1.86792 * 120.00019 * 176.31131 * 7 5 3 10 10 H 1.48499 * 109.47752 * 94.99384 * 9 7 5 11 11 H 1.48504 * 109.47092 * 214.99253 * 9 7 5 12 12 H 1.48508 * 109.47302 * 334.99042 * 9 7 5 13 13 N 1.46502 * 109.47142 * 61.57184 * 3 2 1 14 14 C 1.34772 * 120.00240 * 275.00272 * 13 3 2 15 15 O 1.21284 * 120.00029 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00217 * 179.72341 * 14 13 3 17 17 C 1.52997 * 109.47335 * 295.77688 * 16 14 13 18 18 C 1.53008 * 109.46946 * 55.77465 * 16 14 13 19 19 C 1.50701 * 109.47467 * 175.77320 * 16 14 13 20 20 C 1.41383 * 128.00705 * 246.01542 * 19 16 14 21 21 C 1.50702 * 126.80506 * 0.03168 * 20 19 16 22 22 N 1.30180 * 106.39583 * 179.89059 * 20 19 16 23 23 O 1.20922 * 111.59901 * 0.39059 * 22 20 19 24 24 C 1.34039 * 111.57105 * 359.74332 * 23 22 20 25 25 C 1.50706 * 126.77800 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46899 * 299.99671 * 1 2 3 27 27 H 1.08994 * 109.47284 * 60.00411 * 1 2 3 28 28 H 1.08999 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47551 * 240.00060 * 2 1 3 30 30 H 1.09005 * 109.47368 * 120.00041 * 2 1 3 31 31 H 0.97001 * 119.99735 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99939 * 95.00063 * 13 3 2 33 33 H 1.08994 * 109.47258 * 65.45859 * 17 16 14 34 34 H 1.08995 * 109.47537 * 185.46321 * 17 16 14 35 35 H 1.08999 * 109.46623 * 305.45850 * 17 16 14 36 36 H 1.08991 * 109.47254 * 65.12841 * 18 16 14 37 37 H 1.09005 * 109.46817 * 185.12757 * 18 16 14 38 38 H 1.09000 * 109.47265 * 305.12462 * 18 16 14 39 39 H 1.08994 * 109.47040 * 82.72206 * 21 20 19 40 40 H 1.08995 * 109.47221 * 202.72238 * 21 20 19 41 41 H 1.09001 * 109.46553 * 322.72158 * 21 20 19 42 42 H 1.08994 * 109.46991 * 274.92829 * 25 24 23 43 43 H 1.09002 * 109.46532 * 34.92538 * 25 24 23 44 44 H 1.08997 * 109.46872 * 154.92273 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6538 1.9644 -0.8755 5 6 3.5465 1.4427 -0.0390 6 1 4.1076 1.8788 0.7742 7 6 4.2084 0.8862 -1.1129 8 7 3.5280 0.2908 -2.0679 9 14 6.0714 0.9778 -1.2112 10 1 6.6584 -0.2686 -0.6569 11 1 6.4854 1.1318 -2.6290 12 1 6.5519 2.1431 -0.4259 13 7 1.5828 2.1221 1.2147 14 6 0.3613 2.6904 1.2498 15 8 -0.3597 2.6389 0.2759 16 6 -0.1114 3.3841 2.5013 17 6 -0.2359 2.3633 3.6342 18 6 0.8968 4.4648 2.8971 19 6 -1.4544 4.0188 2.2472 20 6 -1.7768 5.3952 2.2262 21 6 -0.8328 6.5472 2.4561 22 7 -3.0500 5.4705 1.9657 23 8 -3.5433 4.3741 1.8354 24 6 -2.6332 3.4026 1.9919 25 6 -2.8742 1.9176 1.9023 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9936 -0.1010 -2.8233 32 1 2.1593 2.1629 1.9938 33 1 0.7516 1.9751 3.8836 34 1 -0.6692 2.8445 4.5109 35 1 -0.8788 1.5430 3.3150 36 1 0.9183 5.2397 2.1310 37 1 0.6027 4.9044 3.8503 38 1 1.8874 4.0203 2.9923 39 1 -0.3035 6.7735 1.5306 40 1 -1.3987 7.4227 2.7744 41 1 -0.1135 6.2785 3.2298 42 1 -3.2198 1.5467 2.8671 43 1 -3.6310 1.7176 1.1438 44 1 -1.9460 1.4147 1.6309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281046069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 12.181963 kcal Electronic energy + Delta-G solvation = -25495.024329 eV Core-core repulsion = 22029.659228 eV Total energy + Delta-G solvation = -3465.365101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.72316 -39.69871 -36.41639 -34.93348 -33.77762 -32.84209 -31.96738 -30.59273 -29.26609 -27.75893 -26.97009 -26.61746 -23.82569 -23.15132 -21.94524 -20.26427 -19.60366 -19.03901 -17.55302 -17.07674 -16.34342 -15.66404 -15.50992 -14.89750 -14.68108 -14.19304 -13.97736 -13.72177 -13.33219 -13.26015 -12.95182 -12.80665 -12.73085 -12.48251 -12.23880 -12.12524 -11.88016 -11.81531 -11.51658 -11.32105 -11.26276 -11.11689 -10.99865 -10.82728 -10.44806 -10.32954 -10.19344 -9.71019 -9.67576 -9.07743 -8.98549 -8.73610 -8.55582 -7.82706 -6.15139 -4.24407 1.69517 2.38032 3.21493 3.29287 3.30241 3.31408 3.37188 4.08471 4.29308 4.35799 4.62569 4.72366 4.93938 5.01521 5.16471 5.32982 5.37981 5.42709 5.52321 5.52722 5.55357 5.63788 5.69095 5.78994 5.86112 5.89449 5.96221 6.08283 6.10168 6.27531 6.33770 6.34360 6.43822 6.60507 6.99138 7.15621 7.33268 7.43543 7.58750 7.71324 7.87553 8.15650 8.47709 8.65101 8.75676 9.11936 9.43426 10.90028 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.004673 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.073828 B = 5990.530012 C = 6563.081118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.511 3.489 15 O -0.540 6.540 16 C -0.006 4.006 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.172 4.172 20 C 0.029 3.971 21 C -0.090 4.090 22 N -0.375 5.375 23 O 0.089 5.911 24 C -0.002 4.002 25 C -0.077 4.077 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 4.655 12.245 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.010 4.010 17 C -0.198 4.198 18 C -0.206 4.206 19 C -0.177 4.177 20 C -0.130 4.130 21 C -0.147 4.147 22 N -0.083 5.083 23 O 0.026 5.974 24 C -0.065 4.065 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.629 5.508 11.173 15.154 hybrid contribution 1.930 -0.417 0.257 1.991 sum -6.699 5.091 11.430 14.193 Atomic orbital electron populations 1.21897 0.98601 0.98016 1.01043 1.21939 0.92351 0.99848 1.02383 1.18774 0.93323 0.88741 0.82195 0.93417 1.21221 0.90510 1.39497 1.06017 0.92142 1.24872 0.98690 0.94647 0.95384 1.69887 1.35488 1.36122 1.10407 0.86467 0.84973 0.78365 0.77494 1.20641 1.21055 1.19832 1.46463 1.15321 1.55111 1.18296 1.20028 0.82734 0.79369 0.88429 1.90680 1.54943 1.59888 1.36261 1.19058 0.90603 0.95837 0.95508 1.21942 1.03063 0.98141 0.96694 1.22267 0.98178 0.98444 1.01733 1.20261 0.95451 0.92113 1.09826 1.23289 0.92022 0.95491 1.02155 1.20649 0.97012 0.93531 1.03473 1.73776 1.11484 1.02656 1.20405 1.84736 1.35511 1.10195 1.66974 1.24058 0.88280 0.93790 1.00407 1.20500 1.05202 0.84770 1.02897 0.94471 0.92981 0.95824 0.88352 0.94966 0.92586 0.78064 0.91222 0.91768 0.91676 0.91000 0.91331 0.91296 0.90128 0.91195 0.88718 0.90135 0.90019 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.46 37.15 0.31 -2.54 16 2 C -0.13 -2.92 5.45 -26.74 -0.15 -3.06 16 3 C 0.27 6.49 2.28 -69.08 -0.16 6.33 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.56 8.71 -34.44 -0.30 -13.86 16 6 H 0.06 1.47 7.73 -52.48 -0.41 1.06 16 7 C 0.07 1.76 5.34 -17.82 -0.10 1.66 16 8 N -0.88 -24.15 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 N -0.70 -13.51 4.78 -54.94 -0.26 -13.77 16 14 C 0.51 9.34 4.26 -10.99 -0.05 9.29 16 15 O -0.54 -11.79 11.72 5.55 0.07 -11.72 16 16 C -0.01 -0.08 0.63 -156.81 -0.10 -0.18 16 17 C -0.14 -1.61 8.12 37.16 0.30 -1.30 16 18 C -0.15 -1.74 6.68 37.16 0.25 -1.50 16 19 C -0.17 -2.62 4.33 -104.42 -0.45 -3.07 16 20 C 0.03 0.44 7.25 -82.10 -0.60 -0.15 16 21 C -0.09 -1.03 8.58 36.01 0.31 -0.72 16 22 N -0.38 -6.20 12.07 33.42 0.40 -5.80 16 23 O 0.09 1.42 11.20 17.18 0.19 1.61 16 24 C 0.00 -0.03 6.88 -35.30 -0.24 -0.27 16 25 C -0.08 -0.95 8.83 36.01 0.32 -0.64 16 26 H 0.04 0.71 4.16 -51.93 -0.22 0.49 16 27 H 0.05 1.17 7.63 -51.93 -0.40 0.78 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 2.56 6.03 -51.93 -0.31 2.25 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 6.48 7.49 -40.82 -0.31 6.17 16 33 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.75 5.89 -51.93 -0.31 0.45 16 36 H 0.07 0.89 5.85 -51.93 -0.30 0.58 16 37 H 0.07 0.64 6.74 -51.93 -0.35 0.29 16 38 H 0.07 0.76 7.18 -51.93 -0.37 0.39 16 39 H 0.08 0.92 7.80 -51.93 -0.41 0.52 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.89 4.75 -51.93 -0.25 0.64 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.44 3.85 -51.93 -0.20 1.24 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -30.28 335.56 -5.89 -36.16 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.30 Total: 6.87 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.64 Total: -10.00 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.77 Total: -43.09 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.26 Total: -10.11 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.28 -5.89 -36.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281046069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.343 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds