Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 H 1.08993 * 109.47205 * 301.57552 * 3 2 1 5 5 C 1.50701 * 109.47403 * 181.57426 * 3 2 1 6 6 H 1.08005 * 119.99763 * 241.69281 * 5 3 2 7 7 C 1.37879 * 120.00077 * 61.69088 * 5 3 2 8 8 N 1.31510 * 119.99727 * 356.30369 * 7 5 3 9 9 Si 1.86792 * 120.00019 * 176.31131 * 7 5 3 10 10 H 1.48499 * 109.47752 * 94.99384 * 9 7 5 11 11 H 1.48504 * 109.47092 * 214.99253 * 9 7 5 12 12 H 1.48508 * 109.47302 * 334.99042 * 9 7 5 13 13 N 1.46502 * 109.47142 * 61.57184 * 3 2 1 14 14 C 1.34772 * 120.00240 * 275.00272 * 13 3 2 15 15 O 1.21284 * 120.00029 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00217 * 179.72341 * 14 13 3 17 17 C 1.52997 * 109.47335 * 295.77688 * 16 14 13 18 18 C 1.53008 * 109.46946 * 55.77465 * 16 14 13 19 19 C 1.50701 * 109.47467 * 175.77320 * 16 14 13 20 20 C 1.41383 * 128.00705 * 246.01542 * 19 16 14 21 21 C 1.50702 * 126.80506 * 0.03168 * 20 19 16 22 22 N 1.30180 * 106.39583 * 179.89059 * 20 19 16 23 23 O 1.20922 * 111.59901 * 0.39059 * 22 20 19 24 24 C 1.34039 * 111.57105 * 359.74332 * 23 22 20 25 25 C 1.50706 * 126.77800 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46899 * 299.99671 * 1 2 3 27 27 H 1.08994 * 109.47284 * 60.00411 * 1 2 3 28 28 H 1.08999 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47551 * 240.00060 * 2 1 3 30 30 H 1.09005 * 109.47368 * 120.00041 * 2 1 3 31 31 H 0.97001 * 119.99735 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99939 * 95.00063 * 13 3 2 33 33 H 1.08994 * 109.47258 * 65.45859 * 17 16 14 34 34 H 1.08995 * 109.47537 * 185.46321 * 17 16 14 35 35 H 1.08999 * 109.46623 * 305.45850 * 17 16 14 36 36 H 1.08991 * 109.47254 * 65.12841 * 18 16 14 37 37 H 1.09005 * 109.46817 * 185.12757 * 18 16 14 38 38 H 1.09000 * 109.47265 * 305.12462 * 18 16 14 39 39 H 1.08994 * 109.47040 * 82.72206 * 21 20 19 40 40 H 1.08995 * 109.47221 * 202.72238 * 21 20 19 41 41 H 1.09001 * 109.46553 * 322.72158 * 21 20 19 42 42 H 1.08994 * 109.46991 * 274.92829 * 25 24 23 43 43 H 1.09002 * 109.46532 * 34.92538 * 25 24 23 44 44 H 1.08997 * 109.46872 * 154.92273 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6538 1.9644 -0.8755 5 6 3.5465 1.4427 -0.0390 6 1 4.1076 1.8788 0.7742 7 6 4.2084 0.8862 -1.1129 8 7 3.5280 0.2908 -2.0679 9 14 6.0714 0.9778 -1.2112 10 1 6.6584 -0.2686 -0.6569 11 1 6.4854 1.1318 -2.6290 12 1 6.5519 2.1431 -0.4259 13 7 1.5828 2.1221 1.2147 14 6 0.3613 2.6904 1.2498 15 8 -0.3597 2.6389 0.2759 16 6 -0.1114 3.3841 2.5013 17 6 -0.2359 2.3633 3.6342 18 6 0.8968 4.4648 2.8971 19 6 -1.4544 4.0188 2.2472 20 6 -1.7768 5.3952 2.2262 21 6 -0.8328 6.5472 2.4561 22 7 -3.0500 5.4705 1.9657 23 8 -3.5433 4.3741 1.8354 24 6 -2.6332 3.4026 1.9919 25 6 -2.8742 1.9176 1.9023 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9936 -0.1010 -2.8233 32 1 2.1593 2.1629 1.9938 33 1 0.7516 1.9751 3.8836 34 1 -0.6692 2.8445 4.5109 35 1 -0.8788 1.5430 3.3150 36 1 0.9183 5.2397 2.1310 37 1 0.6027 4.9044 3.8503 38 1 1.8874 4.0203 2.9923 39 1 -0.3035 6.7735 1.5306 40 1 -1.3987 7.4227 2.7744 41 1 -0.1135 6.2785 3.2298 42 1 -3.2198 1.5467 2.8671 43 1 -3.6310 1.7176 1.1438 44 1 -1.9460 1.4147 1.6309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281046069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = -6.606620 kcal Electronic energy + Delta-G solvation = -25495.839063 eV Core-core repulsion = 22029.659228 eV Total energy + Delta-G solvation = -3466.179835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.87743 -41.13061 -37.75458 -36.60848 -34.90371 -34.37566 -33.52342 -32.18371 -30.26666 -29.00661 -28.61485 -27.55252 -25.28391 -24.65302 -23.36146 -21.60172 -21.12426 -20.51414 -18.84864 -18.53676 -17.67291 -17.21603 -17.08805 -16.33468 -16.27397 -15.45219 -15.07643 -15.03346 -14.58916 -14.41856 -14.35778 -13.98690 -13.92844 -13.56203 -13.51050 -13.26838 -13.16921 -13.12931 -13.05718 -12.88891 -12.69966 -12.62097 -12.39901 -12.12127 -12.09346 -11.94436 -11.52748 -11.48169 -10.97821 -10.85875 -10.56308 -10.35274 -9.97391 -9.53559 -8.13393 -6.29877 0.54215 1.23517 1.45235 1.47052 1.56878 1.93937 2.19099 2.39316 2.74893 3.16398 3.23138 3.57223 3.67454 3.85374 4.01517 4.16500 4.36323 4.42896 4.55548 4.61168 4.61522 4.63073 4.65639 4.73069 4.78006 4.79839 4.86440 4.89817 4.96699 5.01332 5.08440 5.15140 5.19591 5.32578 5.36923 5.39209 5.51297 5.61087 5.69645 5.85563 5.99036 6.22613 6.79301 7.07739 7.32272 7.37885 7.66902 8.91460 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.004673 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.073828 B = 5990.530012 C = 6563.081118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.006 1.006 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.509 3.491 15 O -0.579 6.579 16 C 0.005 3.995 17 C -0.140 4.140 18 C -0.152 4.152 19 C -0.189 4.189 20 C 0.026 3.974 21 C -0.090 4.090 22 N -0.401 5.401 23 O 0.074 5.926 24 C -0.007 4.007 25 C -0.075 4.075 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.402 0.598 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 4.968 14.947 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.348 5.348 14 C 0.295 3.705 15 O -0.460 6.460 16 C 0.001 3.999 17 C -0.198 4.198 18 C -0.209 4.209 19 C -0.194 4.194 20 C -0.133 4.133 21 C -0.147 4.147 22 N -0.112 5.112 23 O 0.015 5.985 24 C -0.071 4.071 25 C -0.132 4.132 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.756 5.820 13.918 16.963 hybrid contribution 1.602 -0.494 -0.621 1.787 sum -6.155 5.326 13.297 15.590 Atomic orbital electron populations 1.21731 0.96816 0.99140 1.00439 1.21769 0.93865 0.99053 1.01175 1.18308 0.92768 0.88873 0.82306 0.98830 1.21593 0.91379 1.38987 1.06291 0.90961 1.25725 1.03158 0.94380 0.95135 1.70051 1.37209 1.37125 1.11015 0.85430 0.79581 0.78794 0.77110 1.19872 1.21636 1.18717 1.46182 1.16166 1.55155 1.17317 1.20833 0.81680 0.78454 0.89509 1.90671 1.55886 1.61089 1.38313 1.19025 0.90431 0.96724 0.93727 1.21996 1.04104 0.97430 0.96223 1.22354 0.97914 0.97589 1.03001 1.20522 0.95940 0.92357 1.10544 1.23878 0.92004 0.96579 1.00809 1.20814 0.96908 0.92801 1.04167 1.73763 1.12490 1.03047 1.21907 1.84703 1.35983 1.10385 1.67467 1.24574 0.88377 0.94643 0.99466 1.20581 1.04491 0.83169 1.04966 0.92878 0.95780 0.93704 0.91548 0.93975 0.92797 0.76309 0.89875 0.89445 0.92015 0.91907 0.88119 0.90445 0.90366 0.90109 0.86261 0.86721 0.89541 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.46 71.98 0.61 -4.55 16 2 C -0.12 -5.60 5.45 30.59 0.17 -5.44 16 3 C 0.28 13.70 2.28 44.24 0.10 13.80 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.54 -27.62 8.71 25.60 0.22 -27.40 16 6 H 0.07 3.41 7.73 -2.91 -0.02 3.39 16 7 C 0.02 0.84 5.34 84.66 0.45 1.29 16 8 N -0.92 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.70 -26.36 4.78 -446.11 -2.13 -28.49 16 14 C 0.51 18.31 4.26 87.66 0.37 18.69 16 15 O -0.58 -25.81 11.72 -3.04 -0.04 -25.85 16 16 C 0.00 0.13 0.63 -53.67 -0.03 0.09 16 17 C -0.14 -2.73 8.12 71.98 0.58 -2.14 16 18 C -0.15 -3.07 6.68 71.98 0.48 -2.59 16 19 C -0.19 -5.48 4.33 -19.74 -0.09 -5.57 16 20 C 0.03 0.76 7.25 43.58 0.32 1.08 16 21 C -0.09 -1.88 8.58 71.24 0.61 -1.27 16 22 N -0.40 -13.09 12.07 -49.55 -0.60 -13.69 16 23 O 0.07 2.37 11.20 71.64 0.80 3.17 16 24 C -0.01 -0.21 6.88 25.04 0.17 -0.04 16 25 C -0.08 -1.78 8.83 71.24 0.63 -1.15 16 26 H 0.05 2.01 4.16 -2.38 -0.01 2.00 16 27 H 0.02 1.10 7.63 -2.39 -0.02 1.08 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 3.57 6.03 -2.39 -0.01 3.55 16 30 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.40 12.67 7.49 -92.70 -0.69 11.98 16 33 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 36 H 0.06 1.40 5.85 -2.39 -0.01 1.39 16 37 H 0.10 1.41 6.74 -2.38 -0.02 1.40 16 38 H 0.08 1.45 7.18 -2.39 -0.02 1.43 16 39 H 0.08 1.69 7.80 -2.39 -0.02 1.67 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 1.83 4.75 -2.39 -0.01 1.82 16 42 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 2.30 3.85 -2.39 -0.01 2.30 16 Total: -1.00 -68.16 335.56 5.24 -62.92 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.34 Total: 25.27 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.60 Total: -15.20 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.49 Total: -93.47 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.77 Total: -22.67 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -68.16 5.24 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281046069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.317 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds